Data search
Results for MligTC455_32671
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_32671 | 2687 | 55.97 | Mlig455_000015, Mlig455_063723 | Neo: - Age: - |
Mlig455_000015 {REF} {Length: 669} {NoTransDecoderORF} {RNA1310_58941} {RNA815_56892} Mlig455_063723 {REF} {Length: 2704} {TRANSSPLICED} {RNA1509_32182, RNA1509_4348} {RNA1310_34334.1, RNA1509_32182, RNA1509_4348} {RNA1509_32182, RNA1509_4348, RNA815_13650.2} |
Cumulative graph for MligTC455_32671
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.251 | 5.888 | 0.66074 | 1.00000 | |
| RegionR2 | -0.012 | 5.888 | 0.97092 | 1.00000 | |
| RegionR3 | 0.513 | 5.888 | 0.05447 | 0.40945 | |
| RegionR4 | 0.008 | 5.888 | 0.97808 | 1.00000 | |
| RegionR5 | -0.003 | 5.888 | 0.99170 | 1.00000 | |
| RegionR6 | 0.332 | 5.888 | 0.21360 | 0.79178 | |
| RegionR7 | -0.738 | 5.888 | 0.02771 | 0.31550 | |
| RegionR8 | 0.15 | 5.888 | 0.66880 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.587 | 5.888 | 0.48554 | 1.00000 | |
| RegenerationR2 | -0.3 | 5.888 | 0.34928 | 0.78120 | |
| RegenerationR3 | -0.283 | 5.888 | 0.39030 | 0.79632 | |
| RegenerationR4 | 0.055 | 5.888 | 0.86902 | 1.00000 | |
| RegenerationR5 | 0.275 | 5.888 | 0.39879 | 0.79850 | |
| RegenerationR6 | -0.016 | 5.888 | 0.96085 | 1.00000 | |
| RegenerationBL | 0.708 | 5.888 | 0.02714 | 0.18224 | |
| RegenerationTP | 0.005 | 5.888 | 0.98987 | 1.00000 |
Genes with expression patterns similar to MligTC455_32671
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_32671 | 2687 | 55.97 | Mlig455_000015, Mlig455_063723 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_000015 {REF} {Length: 669} {NoTransDecoderORF} {RNA1310_58941} {RNA815_56892} Mlig455_063723 {REF} {Length: 2704} {TRANSSPLICED} {RNA1509_32182, RNA1509_4348} {RNA1310_34334.1, RNA1509_32182, RNA1509_4348} {RNA1509_32182, RNA1509_4348, RNA815_13650.2} |
|
| 2. | MligTC455_45268 | 1496 | 31.16 | Mlig455_016251 | Neo: - Age: - |
PDK3 | 0.983 | - | - | - | 0.983 | - | - | Mlig455_016251 {REF} {Length: 3291} {TRANSSPLICED} {Pfam: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase [PF10436.11, score=159.5]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=52.7]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.8, score=18.6]} {Human: ENSG00000067992, PDK3, pyruvate dehydrogenase kinase 3, [RH, Score=363, Expect=3e-123]; ENSG00000005882, PDK2, pyruvate dehydrogenase kinase 2, [RH, Score=358, Expect=5e-121]; ENSG00000004799, PDK4, pyruvate dehydrogenase kinase 4, [RH, Score=356, Expect=5e-120]; ENSG00000152256, PDK1, pyruvate dehydrogenase kinase 1, [RH, Score=345, Expect=1e-115]} {Mouse: ENSMUSG00000035232, Pdk3, pyruvate dehydrogenase kinase, isoenzyme 3, [RH, Score=364, Expect=2e-123]; ENSMUSG00000038967, Pdk2, pyruvate dehydrogenase kinase, isoenzyme 2, [RH, Score=355, Expect=8e-120]; ENSMUSG00000019577, Pdk4, pyruvate dehydrogenase kinase, isoenzyme 4, [RH, Score=352, Expect=1e-118]; ENSMUSG00000006494, Pdk1, pyruvate dehydrogenase kinase, isoenzyme 1, [RH, Score=350, Expect=9e-118]} {Dmel: FBgn0017558, Pdk, Pyruvate dehydrogenase kinase, [RH, Score=403, Expect=9e-139]} {Celegans: WBGene00022719, pdhk-2, Probable [pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial, [RH, Score=357, Expect=4e-121]} {Smed: dd_Smed_v6_8596_0_1, dd_Smed_v6_8596_0_1, [RH, Score=387, Expect=3e-133]} {RNA1509_11479, RNA1509_44060, RNA1509_51757} {RNA1310_20044, RNA1509_11479, RNA1509_44060, RNA1509_51757} {RNA1509_11479, RNA1509_44060, RNA1509_51757, RNA815_9273} |
| 3. | MligTC455_34171 | 1083 | 22.57 | Mlig455_037006 | Neo: Int S/G2/M |
RACK1 | 0.962 | - | - | - | 0.962 | - | - | Mlig455_037006 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=161.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=46.0]; Nucleoporin Nup120/160 [PF11715.10, score=32.7]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.1]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.3]; Cytochrome D1 heme domain [PF02239.18, score=18.9]; Protein of unknown function (DUF1513) [PF07433.13, score=18.9]} {Human: ENSG00000204628, RACK1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Mouse: ENSMUSG00000020372, Rack1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Dmel: FBgn0020618, Rack1, Receptor of activated protein kinase C 1, [RH, Score=461, Expect=1e-164]} {Celegans: WBGene00010556, rack-1, Guanine nucleotide-binding protein subunit beta-2-like 1, [RH, Score=434, Expect=7e-154]} {Smed: dd_Smed_v6_174_0_1, dd_Smed_v6_174_0_1, [RH, Score=485, Expect=2e-174]} {RNA1509_454} {RNA1310_23103.1} {RNA815_9604} |
| 4. | MligTC455_44008 | 5188 | 108.09 | Mlig455_028358 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R4: 1.022/0.00000 |
PSMB6 | 0.961 | - | - | - | - | 0.961 | - | Mlig455_028358 {REF} {Length: 1145} {TRANSSPLICED} {Pfam: Proteasome subunit [PF00227.28, score=146.4]} {Human: ENSG00000142507, PSMB6, proteasome subunit beta 6, [RH, Score=251, Expect=3e-84]} {Mouse: ENSMUSG00000018286, Psmb6, proteasome (prosome, macropain) subunit, beta type 6, [RH, Score=256, Expect=2e-86]} {Dmel: FBgn0010590, Prosbeta1, Proteasome beta1 subunit, [RH, Score=221, Expect=4e-73]} {Celegans: WBGene00003947, pbs-1, Proteasome subunit beta type, [RH, Score=224, Expect=4e-74]} {Smed: dd_Smed_v6_1583_0_1, dd_Smed_v6_1583_0_1, [RH, Score=221, Expect=2e-73]} {RNA1509_14305, RNA1509_1664} {RNA1310_31285.2, RNA1509_14305, RNA1509_1664} {RNA1509_14305, RNA1509_1664, RNA815_14095} |
| 5. | MligTC455_29659 | 1489 | 31.02 | Mlig455_013594 | Neo: - Age: logFC(26M/2M)=0.174 Regeneration-upregulated BL: 1.658 Regeneration-enriched BL: 1.658 |
UGP2 | 0.952 | - | - | - | 0.952 | - | - | Mlig455_013594 {REF} {Length: 2365} {TRANSSPLICED} {Pfam: UTP--glucose-1-phosphate uridylyltransferase [PF01704.20, score=614.7]} {Human: ENSG00000169764, UGP2, UDP-glucose pyrophosphorylase 2, [RH, Score=634, Expect=0.0]} {Mouse: ENSMUSG00000001891, Ugp2, UDP-glucose pyrophosphorylase 2, [RH, Score=634, Expect=0.0]} {Dmel: FBgn0035978, UGP, [RH, Score=622, Expect=0.0]} {Celegans: WBGene00010665, K08E3.5, [RH, Score=621, Expect=0.0]} {Smed: dd_Smed_v6_3057_0_1, dd_Smed_v6_3057_0_1, [RH, Score=621, Expect=0.0]} {RNA1509_1617, RNA1509_16972, RNA1509_22084, RNA1509_34358, RNA1509_34975} {RNA1310_6161.1, RNA1509_16972, RNA1509_22084, RNA1509_34358, RNA1509_34975} {RNA1509_16972, RNA1509_22084, RNA1509_34358, RNA1509_34975, RNA815_2096.1} |
| 6. | MligTC455_47496 | 107 | 2.23 | Mlig455_044892 | Neo: - Age: Up-Down-Up |
PRKCSH | 0.95 | - | - | - | 0.950 | - | - | Mlig455_044892 {REF} {Length: 2550} {TRANSSPLICED} {Pfam: Glucosidase II beta subunit-like [PF12999.9, score=141.3]; Glucosidase II beta subunit-like protein [PF13015.8, score=86.1]; Glucosidase II beta subunit-like protein [PF07915.15, score=37.6]; EF hand [PF00036.34, score=25.9]; EF-hand domain pair [PF13499.8, score=25.4]; EF-hand domain [PF13405.8, score=23.7]; EF hand [PF13202.8, score=20.0]} {Human: ENSG00000130175, PRKCSH, protein kinase C substrate 80K-H, [RH, Score=360, Expect=7e-119]} {Mouse: ENSMUSG00000003402, Prkcsh, protein kinase C substrate 80K-H, [RH, Score=360, Expect=6e-119]} {Dmel: FBgn0032643, GCS2beta, Glucosidase 2 beta subunit, [RH, Score=278, Expect=4e-87]} {Celegans: WBGene00014249, ZK1307.8, [RH, Score=347, Expect=5e-114]} {Smed: dd_Smed_v6_1730_0_1, dd_Smed_v6_1730_0_1, [RH, Score=408, Expect=2e-138]} {RNA1509_3103} {RNA1310_16892, RNA1509_3103} {RNA1509_3103, RNA815_6798} |
Berezikov Lab - 2020-2021 © ERIBA