TomoSeq data search

Data search

Results for MligTC455_32690

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32690

192

4.00

Mlig455_045415

Neo: Int S/G2/M

Age: -

MDC1

Mlig455_045415 {REF} {Length: 6012} {TRANSSPLICED} {Pfam: Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=45.4]; FHA domain [PF00498.28, score=43.7]; Regulator of Ty1 transposition protein 107 BRCT domain [PF16770.7, score=31.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=24.8]} {Human: ENSG00000234012, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000224587, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000228575, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000137337, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000206481, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000231135, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000237095, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000225589, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000061607, Mdc1, mediator of DNA damage checkpoint 1, [RH, Score=130, Expect=6e-30]} {Dmel: FBgn0052133, Ptip, PAX transcription activation domain interacting protein, [Score=65.9, Expect=3e-10]} {Celegans: WBGene00004031, pis-1, PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog, [Score=61.6, Expect=4e-09]} {Smed: dd_Smed_v6_4697_0_1, dd_Smed_v6_4697_0_1, [RH, Score=123, Expect=3e-28]} {RNA1509_17127, RNA1509_54059} {RNA1310_17331, RNA1509_17127, RNA1509_54059} {RNA1509_17127, RNA1509_54059, RNA815_20409}

Cumulative graph for MligTC455_32690

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-6.338	2.852	0.12939	0.72694
RegionR2	1.885	2.852	0.06575	0.31077
RegionR3	-0.067	2.852	0.87580	1.00000
RegionR4	1.274	2.852	0.20582	0.48792
RegionR5	1.592	2.852	0.02533	0.11472
RegionR6	1.507	2.852	0.07765	0.51713
RegionR7	0.519	2.852	0.64654	1.00000
RegionR8	-0.372	2.852	0.94295	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.383	2.852	0.99971	1.00000
RegenerationR2	0.157	2.852	0.80489	0.99106
RegenerationR3	2.01	2.852	0.00474	0.12387
RegenerationR4	-0.024	2.852	0.97852	1.00000
RegenerationR5	0.422	2.852	0.43178	0.81925
RegenerationR6	0.805	2.852	0.21023	0.55331
RegenerationBL	0.986	2.852	0.37332	0.74159
RegenerationTP	-0.905	2.852	0.54750	0.93135

Genes with expression patterns similar to MligTC455_32690

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32690	192	4	Mlig455_045415	Neo: Int S/G2/M Age: -	MDC1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_045415 {REF} {Length: 6012} {TRANSSPLICED} {Pfam: Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=45.4]; FHA domain [PF00498.28, score=43.7]; Regulator of Ty1 transposition protein 107 BRCT domain [PF16770.7, score=31.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=24.8]} {Human: ENSG00000234012, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000224587, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000228575, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000137337, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000206481, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000231135, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000237095, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000225589, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000061607, Mdc1, mediator of DNA damage checkpoint 1, [RH, Score=130, Expect=6e-30]} {Dmel: FBgn0052133, Ptip, PAX transcription activation domain interacting protein, [Score=65.9, Expect=3e-10]} {Celegans: WBGene00004031, pis-1, PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog, [Score=61.6, Expect=4e-09]} {Smed: dd_Smed_v6_4697_0_1, dd_Smed_v6_4697_0_1, [RH, Score=123, Expect=3e-28]} {RNA1509_17127, RNA1509_54059} {RNA1310_17331, RNA1509_17127, RNA1509_54059} {RNA1509_17127, RNA1509_54059, RNA815_20409}
2.	MligTC455_45519	148	3.08	Mlig455_011435, Mlig455_061176	Neo: - Age: -		0.969	-	-	0.969	-	-	-	Mlig455_011435 {REF} {Length: 2322} {RNA1310_38993} {RNA815_43660} Mlig455_061176 {REF} {Length: 3147} {RNA1509_51062} {RNA1310_38993} {RNA815_43660}
3.	MligTC455_32353	256	5.33	Mlig455_068474	Neo: - Age: Up-Down-Up	TBCK	0.96	-	-	-	-	-	0.960	Mlig455_068474 {REF} {Length: 3834} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=118.5]; Rhodanese-like domain [PF00581.22, score=26.3]} {Human: ENSG00000145348, TBCK, TBC1 domain containing kinase, [RH, Score=369, Expect=2e-114]} {Mouse: ENSMUSG00000028030, Tbck, TBC1 domain containing kinase, [Score=388, Expect=4e-121]} {Dmel: FBgn0029736, CG4041, [RH, Score=308, Expect=3e-92]} {Celegans: WBGene00016352, tbck-1, TBC Kinase homolog, [RH, Score=168, Expect=6e-43]} {Smed: dd_Smed_v6_8735_0_1, dd_Smed_v6_8735_0_1, [RH, Score=225, Expect=4e-62]} {RNA1509_44248} {RNA1310_5322.1} {RNA815_1570}
4.	MligTC455_37570	446	9.3	Mlig455_009506	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.421	SRP72	0.96	-	-	-	-	-	0.960	Mlig455_009506 {REF} {Length: 3095} {Pfam: Putative TPR-like repeat [PF17004.7, score=60.8]; SRP72 RNA-binding domain [PF08492.14, score=58.5]; Tetratricopeptide repeat [PF07719.19, score=30.2]} {Human: ENSG00000174780, SRP72, signal recognition particle 72, [RH, Score=338, Expect=4e-106]} {Mouse: ENSMUSG00000036323, Srp72, signal recognition particle 72, [RH, Score=328, Expect=1e-102]} {Dmel: FBgn0038810, Srp72, Signal recognition particle protein 72, [RH, Score=287, Expect=4e-87]} {Celegans: WBGene00017245, srpa-72, Signal recognition particle subunit SRP72, [RH, Score=241, Expect=4e-70]} {Smed: dd_Smed_v6_2629_0_1, dd_Smed_v6_2629_0_1, [RH, Score=375, Expect=2e-120]} {RNA1509_27018, RNA1509_4629} {RNA1310_9141.3, RNA1509_27018, RNA1509_4629} {RNA1509_27018, RNA1509_4629, RNA815_4690}
5.	MligTC455_32352	254	5.29	Mlig455_032292	Neo: - Age: -	TBCK	0.957	-	-	-	-	-	0.957	Mlig455_032292 {REF} {Length: 4238} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=118.2]; Rhodanese-like domain [PF00581.22, score=25.9]; Protein kinase domain [PF00069.27, score=25.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=18.8]} {Human: ENSG00000145348, TBCK, TBC1 domain containing kinase, [RH, Score=469, Expect=3e-150]} {Mouse: ENSMUSG00000028030, Tbck, TBC1 domain containing kinase, [RH, Score=473, Expect=7e-152]} {Dmel: FBgn0029736, CG4041, [RH, Score=308, Expect=5e-91]} {Celegans: WBGene00016352, tbck-1, TBC Kinase homolog, [RH, Score=168, Expect=1e-42]} {Smed: dd_Smed_v6_8735_0_1, dd_Smed_v6_8735_0_1, [RH, Score=292, Expect=5e-85]} {RNA1509_21783, RNA1509_44248} {RNA1310_5322.1, RNA1509_21783, RNA1509_44248} {RNA1509_21783, RNA1509_44248, RNA815_1570}
6.	MligTC455_13180	308	6.41	Mlig455_006099, Mlig455_032871	Neo: - Age: -	RERE	0.954	-	-	-	-	-	0.954	Mlig455_006099 {REF} {Length: 3462} {TRANSSPLICED} {Pfam: BAH domain [PF01426.20, score=49.2]; ELM2 domain [PF01448.26, score=36.1]; YL1 nuclear protein [PF05764.15, score=20.6]; Atrophin-1 family [PF03154.17, score=18.3]} {Human: ENSG00000142599, RERE, arginine-glutamic acid dipeptide repeats, [RH, Score=254, Expect=1e-69]} {Mouse: ENSMUSG00000039852, Rere, arginine glutamic acid dipeptide (RE) repeats, [RH, Score=253, Expect=2e-69]} {Dmel: FBgn0010825, Gug, Grunge, [RH, Score=157, Expect=1e-38]} {Celegans: WBGene00001194, egl-27, Egg-laying defective protein 27, [RH, Score=154, Expect=4e-38]} {Smed: dd_Smed_v6_6341_0_1, dd_Smed_v6_6341_0_1, [RH, Score=191, Expect=1e-49]} {RNA1509_37003, RNA1509_9251} {RNA1310_3861, RNA1509_9251} {RNA1509_9251, RNA815_1114.1} Mlig455_032871 {REF} {Length: 3328} {TRANSSPLICED} {Pfam: BAH domain [PF01426.20, score=49.2]; ELM2 domain [PF01448.26, score=36.2]; YL1 nuclear protein [PF05764.15, score=20.5]; Atrophin-1 family [PF03154.17, score=18.6]; BUD22 [PF09073.12, score=18.1]} {Human: ENSG00000142599, RERE, arginine-glutamic acid dipeptide repeats, [Score=211, Expect=9e-56]} {Mouse: ENSMUSG00000039852, Rere, arginine glutamic acid dipeptide (RE) repeats, [Score=213, Expect=3e-56]} {Dmel: FBgn0010825, Gug, Grunge, [Score=109, Expect=7e-24]} {Celegans: WBGene00001194, egl-27, Egg-laying defective protein 27, [Score=112, Expect=4e-25]} {Smed: dd_Smed_v6_6341_0_1, dd_Smed_v6_6341_0_1, [Score=166, Expect=7e-42]} {RNA1509_37003} {RNA1310_3861} {RNA815_1114.1}
7.	MligTC455_49289	402	8.37	Mlig455_009864	Neo: Neoblast, stringent Age: -		0.954	-	-	-	-	0.954	-	Mlig455_009864 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1310_24631, RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1509_12825, RNA1509_19362, RNA1509_60056, RNA815_4319.3}
8.	MligTC455_16290	424	8.83	Mlig455_012500, Mlig455_012589	Neo: - Age: logFC(26M/2M)=-0.374 Region-enriched R5: 3.298/0.00068 Region-enriched R4: 3.099/0.03444	SLC29A1	0.953	-	-	-	-	0.953	-	Mlig455_012500 {REF} {Length: 3324} {Pfam: Nucleoside transporter [PF01733.20, score=230.1]} {Human: ENSG00000112759, SLC29A1, solute carrier family 29 member 1 (Augustine blood group), [Score=153, Expect=1e-40]; ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [Score=148, Expect=1e-38]} {Mouse: ENSMUSG00000023942, Slc29a1, solute carrier family 29 (nucleoside transporters), member 1, [Score=150, Expect=6e-40]; ENSMUSG00000024891, Slc29a2, solute carrier family 29 (nucleoside transporters), member 2, [Score=143, Expect=4e-37]} {Dmel: FBgn0263916, Ent2, Equilibrative nucleoside transporter 2, [RH, Score=264, Expect=1e-82]} {Celegans: WBGene00001320, ent-1, Equilibrative Nucleoside Transporter; Equilibrative nucleoside transporter 1, [RH, Score=240, Expect=6e-74]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [Score=153, Expect=2e-41]} {RNA1509_15022, RNA1509_52896} {RNA1310_8593.2, RNA1509_15022, RNA1509_52896} {RNA1509_15022, RNA1509_52896, RNA815_5676.1} Mlig455_012589 {REF} {Length: 3121} {Pfam: Nucleoside transporter [PF01733.20, score=230.1]} {Human: ENSG00000112759, SLC29A1, solute carrier family 29 member 1 (Augustine blood group), [Score=153, Expect=1e-40]; ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [Score=148, Expect=1e-38]} {Mouse: ENSMUSG00000023942, Slc29a1, solute carrier family 29 (nucleoside transporters), member 1, [Score=150, Expect=6e-40]; ENSMUSG00000024891, Slc29a2, solute carrier family 29 (nucleoside transporters), member 2, [Score=143, Expect=4e-37]} {Dmel: FBgn0263916, Ent2, Equilibrative nucleoside transporter 2, [RH, Score=264, Expect=1e-82]} {Celegans: WBGene00001320, ent-1, Equilibrative Nucleoside Transporter; Equilibrative nucleoside transporter 1, [RH, Score=240, Expect=6e-74]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [Score=153, Expect=2e-41]} {RNA1509_15022} {RNA1310_8593.2} {RNA815_5676.1}
9.	MligTC455_42430	188	3.92	Mlig455_022780	Neo: Int S/G2/M Age: -	MRPL32	0.953	-	-	0.953	-	-	-	Mlig455_022780 {REF} {Length: 1005} {TRANSSPLICED} {Pfam: Ribosomal L32p protein family [PF01783.25, score=26.3]} {Human: ENSG00000106591, MRPL32, mitochondrial ribosomal protein L32, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000015672, Mrpl32, mitochondrial ribosomal protein L32, [RH, Score=53.5, Expect=4e-09]} {RNA1509_49656, RNA1509_49961} {RNA1310_56677, RNA1509_49656, RNA1509_49961} {RNA1509_49656, RNA1509_49961, RNA815_29857}
10.	MligTC455_49558	224	4.67	Mlig455_017261	Neo: Int S/G2/M Age: -	NUDT7	0.951	-	-	-	-	-	0.951	Mlig455_017261 {REF} {Length: 2157} {TRANSSPLICED} {Pfam: NUDIX domain [PF00293.30, score=45.1]} {Human: ENSG00000140876, NUDT7, nudix hydrolase 7, [RH, Score=69.7, Expect=2e-13]} {Mouse: ENSMUSG00000031767, Nudt7, nudix (nucleoside diphosphate linked moiety X)-type motif 7, [RH, Score=73.2, Expect=1e-14]} {Dmel: FBgn0030528, CG11095, [Score=53.9, Expect=3e-08]} {Celegans: WBGene00003580, ndx-3, Nudix hydrolase 3, [Score=70.1, Expect=4e-14]} {Smed: dd_Smed_v6_9587_0_1, dd_Smed_v6_9587_0_1, [RH, Score=68.2, Expect=3e-13]} {RNA1509_53342} {RNA1310_35967, RNA1509_53342} {RNA1509_53342, RNA815_19304}

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