TomoSeq data search

Data search

Results for MligTC455_42430

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_42430	188	3.92	Mlig455_022780	Neo: Int S/G2/M Age: -	MRPL32	Mlig455_022780 {REF} {Length: 1005} {TRANSSPLICED} {Pfam: Ribosomal L32p protein family [PF01783.25, score=26.3]} {Human: ENSG00000106591, MRPL32, mitochondrial ribosomal protein L32, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000015672, Mrpl32, mitochondrial ribosomal protein L32, [RH, Score=53.5, Expect=4e-09]} {RNA1509_49656, RNA1509_49961} {RNA1310_56677, RNA1509_49656, RNA1509_49961} {RNA1509_49656, RNA1509_49961, RNA815_29857}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_42430

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.904	2.641	0.23903	0.88508
RegionR2	0.114	2.641	0.88656	1.00000
RegionR3	0.868	2.641	0.09391	0.53952
RegionR4	-0.513	2.641	0.41278	0.73979
RegionR5	0.916	2.641	0.04607	0.17672
RegionR6	0.827	2.641	0.13260	0.65508
RegionR7	0.264	2.641	0.72097	1.00000
RegionR8	-0.572	2.641	0.58365	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-3.722	2.641	0.54753	1.00000
RegenerationR2	1.196	2.641	0.05773	0.39531
RegenerationR3	0.112	2.641	0.85436	0.99929
RegenerationR4	0.46	2.641	0.47626	0.85666
RegenerationR5	-0.066	2.641	0.91726	1.00000
RegenerationR6	0.182	2.641	0.77981	0.96750
RegenerationBL	-1.323	2.641	0.30728	0.67181
RegenerationTP	1.51	2.641	0.07961	0.44971

Genes with expression patterns similar to MligTC455_42430

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_42430	188	3.92	Mlig455_022780	Neo: Int S/G2/M Age: -	MRPL32	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_022780 {REF} {Length: 1005} {TRANSSPLICED} {Pfam: Ribosomal L32p protein family [PF01783.25, score=26.3]} {Human: ENSG00000106591, MRPL32, mitochondrial ribosomal protein L32, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000015672, Mrpl32, mitochondrial ribosomal protein L32, [RH, Score=53.5, Expect=4e-09]} {RNA1509_49656, RNA1509_49961} {RNA1310_56677, RNA1509_49656, RNA1509_49961} {RNA1509_49656, RNA1509_49961, RNA815_29857}
2.	MligTC455_32690	192	4	Mlig455_045415	Neo: Int S/G2/M Age: -	MDC1	0.953	-	-	0.953	-	-	-	Mlig455_045415 {REF} {Length: 6012} {TRANSSPLICED} {Pfam: Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=45.4]; FHA domain [PF00498.28, score=43.7]; Regulator of Ty1 transposition protein 107 BRCT domain [PF16770.7, score=31.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=24.8]} {Human: ENSG00000234012, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000224587, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000228575, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000137337, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000206481, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000231135, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000237095, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000225589, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000061607, Mdc1, mediator of DNA damage checkpoint 1, [RH, Score=130, Expect=6e-30]} {Dmel: FBgn0052133, Ptip, PAX transcription activation domain interacting protein, [Score=65.9, Expect=3e-10]} {Celegans: WBGene00004031, pis-1, PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog, [Score=61.6, Expect=4e-09]} {Smed: dd_Smed_v6_4697_0_1, dd_Smed_v6_4697_0_1, [RH, Score=123, Expect=3e-28]} {RNA1509_17127, RNA1509_54059} {RNA1310_17331, RNA1509_17127, RNA1509_54059} {RNA1509_17127, RNA1509_54059, RNA815_20409}
3.	MligTC455_16340	123	2.57	Mlig455_013287, Mlig455_035931	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_013287 {REF} {Length: 1035} {NoTransDecoderORF} Mlig455_035931 {REF} {Length: 1106} {NoTransDecoderORF} {RNA1509_26559} {RNA1310_20727.1} {RNA815_9605}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_42430

188

3.92

Mlig455_022780

Neo: Int S/G2/M

Age: -

MRPL32

1.000

MligTC455_32690

192

Mlig455_045415

Neo: Int S/G2/M

Age: -

MDC1

0.953

Mlig455_045415 {REF} {Length: 6012} {TRANSSPLICED} {Pfam: Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=45.4]; FHA domain [PF00498.28, score=43.7]; Regulator of Ty1 transposition protein 107 BRCT domain [PF16770.7, score=31.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=24.8]} {Human: ENSG00000234012, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000224587, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000228575, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000137337, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000206481, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000231135, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000237095, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]; ENSG00000225589, MDC1, mediator of DNA damage checkpoint 1, [RH, Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000061607, Mdc1, mediator of DNA damage checkpoint 1, [RH, Score=130, Expect=6e-30]} {Dmel: FBgn0052133, Ptip, PAX transcription activation domain interacting protein, [Score=65.9, Expect=3e-10]} {Celegans: WBGene00004031, pis-1, PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog, [Score=61.6, Expect=4e-09]} {Smed: dd_Smed_v6_4697_0_1, dd_Smed_v6_4697_0_1, [RH, Score=123, Expect=3e-28]} {RNA1509_17127, RNA1509_54059} {RNA1310_17331, RNA1509_17127, RNA1509_54059} {RNA1509_17127, RNA1509_54059, RNA815_20409}

MligTC455_16340

123

2.57

Mlig455_013287, Mlig455_035931

Neo: -

Age: -

0.95

0.950

Mlig455_013287 {REF} {Length: 1035} {NoTransDecoderORF}

Mlig455_035931 {REF} {Length: 1106} {NoTransDecoderORF} {RNA1509_26559} {RNA1310_20727.1} {RNA815_9605}