M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32799

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32799 248 5.16 Mlig455_058551

Neo: Int S/G2/M

Age: Down-Up-Down

 Mlig455_058551 {REF} {Length: 2723} {TRANSSPLICED} {RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201} {RNA1310_22057, RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201} {RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201, RNA815_23554.1}

Cumulative graph for MligTC455_32799

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.842 3.014 0.06656 0.58250
RegionR2 1.943 3.014 0.02981 0.19518
RegionR3 1.21 3.014 0.10626 0.56928
RegionR4 1.128 3.014 0.23589 0.53031
RegionR5 0.107 3.014 0.80936 1.00000
RegionR6 0.489 3.014 0.59278 1.00000
RegionR7 0.938 3.014 0.35217 0.98792
RegionR8 1.027 3.014 0.37280 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.978 3.014 0.99965 1.00000
RegenerationR2 -0.086 3.014 0.89148 1.00000
RegenerationR3 0.285 3.014 0.63491 0.92266
RegenerationR4 -0.92 3.014 0.18594 0.62741
RegenerationR5 1.225 3.014 0.02393 0.26498
RegenerationR6 0.722 3.014 0.31329 0.66096
RegenerationBL 1.738 3.014 0.03551 0.21231
RegenerationTP 0.479 3.014 0.57650 0.94761


Genes with expression patterns similar to MligTC455_32799

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32799 248 5.16 Mlig455_058551

Neo: Int S/G2/M

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_058551 {REF} {Length: 2723} {TRANSSPLICED} {RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201} {RNA1310_22057, RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201} {RNA1509_21425, RNA1509_22662, RNA1509_30808, RNA1509_44899, RNA1509_50201, RNA815_23554.1}
2. MligTC455_53589 347 7.22 Mlig455_032424

Neo: -

Age: Down-Up-Down

 CHIC2 1.692 0.736 - - 0.956 - - Mlig455_032424 {REF} {Length: 2260} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=43.6]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=160, Expect=2e-50]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=155, Expect=1e-47]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=162, Expect=5e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=157, Expect=2e-48]} {Dmel: FBgn0046247, CG5938, [RH, Score=164, Expect=5e-52]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [RH, Score=167, Expect=3e-53]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=126, Expect=1e-37]} {RNA1509_47197, RNA1509_59802} {RNA1310_26581.1, RNA1509_47197, RNA1509_59802} {RNA1509_47197, RNA1509_59802, RNA815_15260}
3. MligTC455_45273 285 5.93 Mlig455_021311

Neo: -

Age: -

 1.653 0.702 - - 0.951 - - Mlig455_021311 {REF} {Length: 2042} {TRANSSPLICED} {RNA1509_45909} {RNA1310_39958.1, RNA1509_45909} {RNA1509_45909, RNA815_33796}
4. MligTC455_28600 90 1.88 Mlig455_010981

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_010981 {REF} {Length: 5815} {RNA1509_37486} {RNA1310_30004.1} {RNA815_31633}
5. MligTC455_33501 123 2.57 Mlig455_003879, Mlig455_052212

Neo: -

Age: -

 0.971 - - - 0.971 - -

Mlig455_003879 {REF} {Length: 220} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_97783} {RNA815_54937}

Mlig455_052212 {REF} {Length: 1790} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_97783} {RNA815_54937}
6. MligTC455_31621 181 3.76 Mlig455_027745

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_027745 {REF} {Length: 2899} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=39.8]; C2H2-type zinc finger [PF13894.8, score=25.4]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=21.0]} {Dmel: FBgn0003963, ush, u-shaped, [Score=59.3, Expect=1e-08]} {RNA1509_20943} {RNA1310_6862} {RNA815_17333}
7. MligTC455_54347 206 4.29 Mlig455_061086

Neo: -

Age: -

 ULK1 0.958 - - - 0.958 - - Mlig455_061086 {REF} {Length: 7837} {Pfam: Protein kinase domain [PF00069.27, score=98.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=65.6]; Fungal protein kinase [PF17667.3, score=25.3]} {Human: ENSG00000177169, ULK1, unc-51 like autophagy activating kinase 1, [Score=77.8, Expect=2e-14]; ENSG00000083290, ULK2, unc-51 like autophagy activating kinase 2, [Score=75.9, Expect=8e-14]; ENSG00000197168, NEK5, NIMA related kinase 5, [Score=75.1, Expect=1e-13]} {Mouse: ENSMUSG00000029512, Ulk1, unc-51 like kinase 1, [Score=77.8, Expect=1e-14]} {Dmel: FBgn0001079, fu, fused, [Score=74.3, Expect=9e-14]} {Celegans: WBGene00004044, plk-3, Serine/threonine-protein kinase plk-3, [Score=72.4, Expect=3e-13]} {Smed: dd_Smed_v6_5138_0_1, dd_Smed_v6_5138_0_1, [Score=73.6, Expect=9e-14]} {RNA1509_14320, RNA1509_47696, RNA1509_59722} {RNA1310_3761, RNA1509_47696, RNA1509_59722} {RNA1509_47696, RNA1509_59722, RNA815_1143}
8. MligTC455_43345 77 1.6 Mlig455_047797

Neo: -

Age: Up-Down-Down

Regeneration-upregulated BL: 6.463

Regeneration-enriched BL: 6.463

 AARS 0.956 - - - 0.956 - - Mlig455_047797 {REF} {Length: 2939} {Human: ENSG00000090861, AARS, alanyl-tRNA synthetase, [Score=49.3, Expect=2e-06]} {Mouse: ENSMUSG00000031960, Aars, alanyl-tRNA synthetase, [Score=47.8, Expect=6e-06]} {RNA1509_2824} {RNA1310_45009} {RNA815_1373.1}
9. MligTC455_45045 166 3.47 Mlig455_014187

Neo: -

Age: -

 GTF3C3 0.956 - - - - 0.956 - Mlig455_014187 {REF} {Length: 2743} {Pfam: Tetratricopeptide repeat [PF07719.19, score=24.1]; Tetratricopeptide repeat [PF14559.8, score=23.3]; Tetratricopeptide repeat [PF13181.8, score=20.9]; Tetratricopeptide repeat [PF13431.8, score=20.6]; Tetratricopeptide repeat [PF13428.8, score=19.3]} {Human: ENSG00000119041, GTF3C3, general transcription factor IIIC subunit 3, [Score=180, Expect=3e-47]} {Mouse: ENSMUSG00000041303, Gtf3c3, general transcription factor IIIC, polypeptide 3, [Score=180, Expect=4e-47]} {Dmel: FBgn0034186, CG8950, [Score=117, Expect=8e-27]} {Celegans: WBGene00014114, tftc-3, Transcription Factor ThreeC subunit (GTF3C homolog), [RH, Score=93.2, Expect=2e-19]} {RNA1509_31814} {RNA1310_6738.1} {RNA815_37445}
10. MligTC455_45046 171 3.56 Mlig455_014208

Neo: -

Age: -

 GTF3C3 0.955 - - - - 0.955 - Mlig455_014208 {REF} {Length: 3720} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF14559.8, score=37.4]; Tetratricopeptide repeat [PF07719.19, score=36.3]; Tetratricopeptide repeat [PF13428.8, score=34.9]; Tetratricopeptide repeat [PF13181.8, score=31.6]; Tetratricopeptide repeat [PF00515.30, score=30.6]; Tetratricopeptide repeat [PF13431.8, score=26.1]; Tetratricopeptide repeat [PF13176.8, score=18.9]} {Human: ENSG00000119041, GTF3C3, general transcription factor IIIC subunit 3, [RH, Score=248, Expect=8e-69]} {Mouse: ENSMUSG00000041303, Gtf3c3, general transcription factor IIIC, polypeptide 3, [RH, Score=249, Expect=2e-69]} {Dmel: FBgn0034186, CG8950, [RH, Score=167, Expect=3e-42]} {Celegans: WBGene00014114, tftc-3, Transcription Factor ThreeC subunit (GTF3C homolog), [RH, Score=129, Expect=3e-30]} {RNA1509_29078, RNA1509_31814, RNA1509_51337} {RNA1310_6738.1, RNA1509_29078, RNA1509_31814, RNA1509_51337} {RNA1509_29078, RNA1509_31814, RNA1509_51337, RNA815_12551}
11. MligTC455_13760 106 2.22 Mlig455_002596

Neo: -

Age: Up-Up-Down

 0.951 - - - 0.951 - - Mlig455_002596 {REF} {Length: 1396} {RNA1310_31120} {RNA815_31550}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA