TomoSeq data search

Data search

Results for MligTC455_33078

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33078

532

11.07

Mlig455_034086

Neo: Int S/G2/M

Age: -

UBE2K

Mlig455_034086 {REF} {Length: 1152} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=134.8]; UBA/TS-N domain [PF00627.33, score=28.3]; RWD domain [PF05773.24, score=19.7]} {Human: ENSG00000078140, UBE2K, ubiquitin conjugating enzyme E2 K, [RH, Score=248, Expect=5e-84]} {Mouse: ENSMUSG00000029203, Ube2k, ubiquitin-conjugating enzyme E2K, [RH, Score=248, Expect=4e-84]} {Dmel: FBgn0015321, Ubc4, Ubiquitin conjugating enzyme 4, [RH, Score=248, Expect=3e-84]} {Celegans: WBGene00006715, ubc-20, UBiquitin Conjugating enzyme, [RH, Score=216, Expect=2e-71]} {Smed: dd_Smed_v6_2631_0_1, dd_Smed_v6_2631_0_1, [RH, Score=256, Expect=1e-87]} {RNA1509_19861} {RNA1310_30343, RNA1509_19861} {RNA1509_19861, RNA815_23409.1}

Cumulative graph for MligTC455_33078

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.135	3.821	0.89138	1.00000
RegionR2	0.501	3.821	0.33335	0.72513
RegionR3	-0.854	3.821	0.04549	0.37347
RegionR4	-0.107	3.821	0.80799	1.00000
RegionR5	0.603	3.821	0.06504	0.22609
RegionR6	-0.692	3.821	0.10905	0.60265
RegionR7	-0.762	3.821	0.24982	0.87612
RegionR8	1.176	3.821	0.05600	0.46220

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.497	3.821	0.13489	0.86987
RegenerationR2	0.596	3.821	0.15898	0.59525
RegenerationR3	1.208	3.821	0.01598	0.23158
RegenerationR4	-0.118	3.821	0.79968	0.98636
RegenerationR5	0.301	3.821	0.44689	0.82876
RegenerationR6	1.35	3.821	0.00678	0.10055
RegenerationBL	1.101	3.821	0.05042	0.25860
RegenerationTP	0.571	3.821	0.36101	0.80097

Genes with expression patterns similar to MligTC455_33078

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33078	532	11.07	Mlig455_034086	Neo: Int S/G2/M Age: -	UBE2K	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_034086 {REF} {Length: 1152} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=134.8]; UBA/TS-N domain [PF00627.33, score=28.3]; RWD domain [PF05773.24, score=19.7]} {Human: ENSG00000078140, UBE2K, ubiquitin conjugating enzyme E2 K, [RH, Score=248, Expect=5e-84]} {Mouse: ENSMUSG00000029203, Ube2k, ubiquitin-conjugating enzyme E2K, [RH, Score=248, Expect=4e-84]} {Dmel: FBgn0015321, Ubc4, Ubiquitin conjugating enzyme 4, [RH, Score=248, Expect=3e-84]} {Celegans: WBGene00006715, ubc-20, UBiquitin Conjugating enzyme, [RH, Score=216, Expect=2e-71]} {Smed: dd_Smed_v6_2631_0_1, dd_Smed_v6_2631_0_1, [RH, Score=256, Expect=1e-87]} {RNA1509_19861} {RNA1310_30343, RNA1509_19861} {RNA1509_19861, RNA815_23409.1}
2.	MligTC455_40748	290	6.04	Mlig455_033303	Neo: Int S/G2/M Age: -		1.775	-	-	-	0.822	-	0.953	Mlig455_033303 {REF} {Length: 1959} {RNA1509_9055} {RNA1310_20842, RNA1509_9055} {RNA1509_9055, RNA815_9420}
3.	MligTC455_10541	568	11.84	Mlig455_046053	Neo: Int S/G2/M Age: - Region-enriched R4: 1.521/0.00803 Region-enriched R5: 1.350/0.00281	RFFL	0.963	-	-	-	-	-	0.963	Mlig455_046053 {REF} {Length: 3172} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=41.8]} {Human: ENSG00000092871, RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase, [RH, Score=122, Expect=2e-32]; ENSG00000267618, RAD51L3-RFFL, RAD51L3-RFFL readthrough, [RH, Score=120, Expect=4e-32]; ENSG00000170633, RNF34, ring finger protein 34, [RH, Score=120, Expect=6e-31]} {Mouse: ENSMUSG00000029474, Rnf34, ring finger protein 34, [RH, Score=126, Expect=1e-33]; ENSMUSG00000020696, Rffl, ring finger and FYVE like domain containing protein, [RH, Score=123, Expect=1e-32]} {Dmel: FBgn0033783, CG17019, [RH, Score=123, Expect=2e-31]} {Celegans: WBGene00017342, F10D7.5, [RH, Score=62.0, Expect=9e-11]} {Smed: dd_Smed_v6_6206_0_1, dd_Smed_v6_6206_0_1, [RH, Score=144, Expect=1e-40]} {RNA1509_15310, RNA1509_54859} {RNA1310_32374, RNA1509_15310, RNA1509_54859} {RNA1509_15310, RNA1509_54859, RNA815_14804}
4.	MligTC455_40244	175	3.65	Mlig455_038594	Neo: - Age: Down-Up-Up	UBLCP1	0.954	-	-	-	-	-	0.954	Mlig455_038594 {REF} {Length: 2444} {TRANSSPLICED} {Pfam: Sir2 family [PF02146.19, score=82.3]; NLI interacting factor-like phosphatase [PF03031.20, score=74.1]; Ubiquitin family [PF00240.25, score=25.6]} {Human: ENSG00000164332, UBLCP1, ubiquitin like domain containing CTD phosphatase 1, [RH, Score=248, Expect=4e-76]} {Mouse: ENSMUSG00000041231, Ublcp1, ubiquitin-like domain containing CTD phosphatase 1, [RH, Score=254, Expect=1e-78]} {Dmel: FBgn0027526, Ublcp1, Ubiquitin-like domain-containing C-terminal domain phosphatase 1, [RH, Score=267, Expect=2e-83]} {Celegans: WBGene00004803, sir-2.4, NAD-dependent protein deacetylase sir-2.4, [Score=112, Expect=2e-27]} {Smed: dd_Smed_v6_4904_0_1, dd_Smed_v6_4904_0_1, [RH, Score=266, Expect=8e-83]} {RNA1509_41577} {RNA1310_21793.1} {RNA815_10040}
5.	MligTC455_36280	634	13.2	Mlig455_045390, Mlig455_045485	Neo: - Age: - Region-enriched R5: 1.183/0.04653 Regeneration-upregulated BL: 2.313 Regeneration-enriched BL: 2.313	SON	0.953	-	-	-	-	-	0.953	Mlig455_045390 {REF} {Length: 2559} {TRANSSPLICED} {Pfam: G-patch domain [PF01585.25, score=52.4]; Double-stranded RNA binding motif [PF00035.28, score=39.9]; double strand RNA binding domain from DEAD END PROTEIN 1 [PF14709.9, score=33.3]; G-patch domain [PF12656.9, score=20.1]} {Human: ENSG00000159140, SON, SON DNA binding protein, [RH, Score=179, Expect=6e-46]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [RH, Score=178, Expect=6e-46]} {Dmel: FBgn0037716, CG8273, [RH, Score=130, Expect=8e-31]} {Celegans: WBGene00017025, D1037.1, [RH, Score=120, Expect=4e-28]} {Smed: dd_Smed_v6_11088_0_3, dd_Smed_v6_11088_0_3, [RH, Score=68.2, Expect=3e-12]} {RNA1509_19845} {RNA1310_13389, RNA1509_19845} {RNA1509_19845, RNA815_22165} Mlig455_045485 {REF} {Length: 2759} {TRANSSPLICED} {Pfam: G-patch domain [PF01585.25, score=52.4]; G-patch domain [PF12656.9, score=20.1]} {Human: ENSG00000159140, SON, SON DNA binding protein, [RH, Score=144, Expect=1e-34]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [RH, Score=144, Expect=6e-35]} {Dmel: FBgn0037716, CG8273, [Score=100, Expect=2e-21]} {Celegans: WBGene00017025, D1037.1, [Score=89.7, Expect=3e-18]} {Smed: dd_Smed_v6_11088_0_2, dd_Smed_v6_11088_0_2, [RH, Score=58.9, Expect=3e-09]} {RNA1509_19845} {RNA1310_13389} {RNA815_22165}

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