M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33250

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33250 13 0.28 Mlig455_065011

Neo: -

Age: -

 TNN Mlig455_065011 {REF} {Length: 2337} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=71.7]; MANEC domain [PF07502.16, score=20.5]} {Human: ENSG00000120332, TNN, tenascin N, [Score=68.9, Expect=7e-12]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=68.2, Expect=7e-12]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=67.4, Expect=2e-11]} {Dmel: FBgn0031804, CG9500, [Score=77.0, Expect=1e-15]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=62.8, Expect=2e-10]} {RNA1509_53291} {RNA1310_21728} {RNA815_9881}

Cumulative graph for MligTC455_33250

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.335 0.648 0.99993 1.00000
RegionR2 1.752 0.648 0.99974 1.00000
RegionR3 -1.19 0.648 0.99993 1.00000
RegionR4 -1.795 0.648 0.99987 1.00000
RegionR5 -1.701 0.648 0.99993 1.00000
RegionR6 0.146 0.648 0.99995 1.00000
RegionR7 2.85 0.648 0.99956 1.00000
RegionR8 0.272 0.648 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.774 0.648 0.99996 1.00000
RegenerationR2 -2.369 0.648 0.01141 0.17406
RegenerationR3 -2.467 0.648 0.99990 1.00000
RegenerationR4 -1.649 0.648 0.99989 1.00000
RegenerationR5 1.092 0.648 0.99973 1.00000
RegenerationR6 -0.447 0.648 0.99986 1.00000
RegenerationBL -4.569 0.648 0.99989 1.00000
RegenerationTP -3.604 0.648 0.99994 1.00000


Genes with expression patterns similar to MligTC455_33250

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33250 13 0.28 Mlig455_065011

Neo: -

Age: -

 TNN 2 - - 1.000 - 1.000 - Mlig455_065011 {REF} {Length: 2337} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=71.7]; MANEC domain [PF07502.16, score=20.5]} {Human: ENSG00000120332, TNN, tenascin N, [Score=68.9, Expect=7e-12]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=68.2, Expect=7e-12]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=67.4, Expect=2e-11]} {Dmel: FBgn0031804, CG9500, [Score=77.0, Expect=1e-15]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=62.8, Expect=2e-10]} {RNA1509_53291} {RNA1310_21728} {RNA815_9881}
2. MligTC455_39464 45 0.94 Mlig455_031874

Neo: -

Age: Up-Down-Down

 1 - - 1.000 - - - Mlig455_031874 {REF} {Length: 2026} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.6]} {RNA1310_22174} {RNA815_24783}
3. MligTC455_06711 4 0.09 Mlig455_022721

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_022721 {REF} {Length: 820} {NoTransDecoderORF} {RNA1509_56556} {RNA1310_44443} {RNA815_22916.1}
4. MligTC455_40259 1948 40.59 Mlig455_057998

Neo: -

Age: -

Region-enriched R7: 4.948/0.00000
Region-enriched R8: 3.768/0.00572

Regeneration-depleted R6: -7.572
Regeneration-depleted BL: -6.043

 AVP 0.987 - - 0.987 - - - Mlig455_057998 {REF} {Length: 1201} {Pfam: Neurohypophysial hormones, C-terminal Domain [PF00184.19, score=58.4]} {Human: ENSG00000101200, AVP, arginine vasopressin, [RH, Score=57.8, Expect=5e-10]} {Mouse: ENSMUSG00000037727, Avp, arginine vasopressin, [RH, Score=62.8, Expect=5e-12]} {RNA1509_15970} {RNA1310_46866} {RNA815_23759}
5. MligTC455_11146 70 1.46 Mlig455_068743

Neo: -

Age: Down-Up-Down

 C11orf65 0.984 - - 0.984 - - - Mlig455_068743 {REF} {Length: 1750} {Human: ENSG00000166323, C11orf65, chromosome 11 open reading frame 65, [RH, Score=226, Expect=4e-72]} {Mouse: ENSMUSG00000005131, 4930550C14Rik, RIKEN cDNA 4930550C14 gene, [RH, Score=214, Expect=2e-67]} {Smed: dd_Smed_v6_13591_0_1, dd_Smed_v6_13591_0_1, [RH, Score=237, Expect=9e-77]} {RNA1310_22540.1} {RNA815_13464}
6. MligTC455_17521 16 0.33 Mlig455_022352

Neo: -

Age: Up-Down-Up

 0.981 - - 0.981 - - - Mlig455_022352 {REF} {Length: 828} {Pfam: WSC domain [PF01822.21, score=50.6]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=48.1, Expect=2e-06]} {RNA1310_27550.1} {RNA815_22520}
7. MligTC455_23548 13 0.28 Mlig455_029881

Neo: -

Age: -

 0.981 - - 0.981 - - - Mlig455_029881 {REF} {Length: 2293} {RNA1310_58945} {RNA815_43403}
8. MligTC455_17729 11 0.22 Mlig455_005654

Neo: -

Age: -

 CALML3 0.97 - - 0.970 - - - Mlig455_005654 {REF} {Length: 1583} {Pfam: EF hand [PF00036.34, score=110.5]; EF-hand domain pair [PF13499.8, score=105.1]; EF hand [PF13202.8, score=91.2]; EF-hand domain [PF13405.8, score=79.3]; EF-hand domain pair [PF13833.8, score=78.4]; EF-hand domain [PF14658.8, score=37.1]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=33.1]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.8]; Dockerin type I domain [PF00404.20, score=25.0]; EF-hand domain [PF08976.13, score=22.6]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=105, Expect=4e-29]; ENSG00000143933, CALM2, calmodulin 2, [Score=103, Expect=1e-27]; ENSG00000160014, CALM3, calmodulin 3, [Score=102, Expect=9e-28]; ENSG00000198668, CALM1, calmodulin 1, [Score=102, Expect=8e-28]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=110, Expect=3e-31]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=105, Expect=4e-29]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=104, Expect=6e-29]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=104, Expect=4e-29]} {RNA1310_77551} {RNA815_27181}
9. MligTC455_26252 224 4.66 Mlig455_009662, Mlig455_023083, Mlig455_070192

Neo: -

Age: -

 0.968 - - 0.968 - - -

Mlig455_009662 {REF} {Length: 2717} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_10444} {RNA1310_2677.1} {RNA815_2733.1}

Mlig455_023083 {REF} {Length: 538} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_21228} {RNA1310_20140} {RNA815_16852}

Mlig455_070192 {REF} {Length: 1085} {NoTransDecoderORF} {tRNA: Arg(ACG),pseudo, score=25.2} {RNA1509_21228} {RNA1310_20140} {RNA815_16852}
10. MligTC455_26251 74 1.54 Mlig455_042876

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_042876 {REF} {Length: 1584} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_27801} {RNA1310_2677.1} {RNA815_43902}
11. MligTC455_09522 4 0.09 Mlig455_053609

Neo: -

Age: -

 ZBTB11 0.964 - - - - 0.964 - Mlig455_053609 {REF} {Length: 1672} {Pfam: Integrase zinc binding domain [PF17921.3, score=67.6]; H2C2 zinc finger [PF09337.12, score=25.1]} {Human: ENSG00000066422, ZBTB11, zinc finger and BTB domain containing 11, [RH, Score=58.9, Expect=3e-10]} {Mouse: ENSMUSG00000022601, Zbtb11, zinc finger and BTB domain containing 11, [Score=56.2, Expect=6e-09]} {RNA1509_33402} {RNA1310_64177} {RNA815_44272}
12. MligTC455_42456 78 1.62 Mlig455_006172

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_006172 {REF} {Length: 4779} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=36.5]; Aspartyl protease [PF13650.8, score=23.2]; Retroviral aspartyl protease [PF00077.22, score=20.8]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=19.4]} {RNA1509_29592} {RNA1310_10223} {RNA815_18935}
13. MligTC455_08758 1024 21.33 Mlig455_033184

Neo: -

Age: logFC(26M/2M)=-0.377

Region-enriched R2: 7.767/0.01574

Regeneration-upregulated TP: 9.987

Regeneration-enriched TP: 9.987

 WDR49 0.953 - - 0.953 - - - Mlig455_033184 {REF} {Length: 4823} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=88.8]; EF-hand domain pair [PF13833.8, score=31.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=31.0]; EF-hand domain pair [PF13499.8, score=25.1]; EF hand [PF00036.34, score=21.7]; Nucleoporin Nup120/160 [PF11715.10, score=18.7]} {Human: ENSG00000174776, WDR49, WD repeat domain 49, [Score=287, Expect=1e-80]} {Mouse: ENSMUSG00000029658, Wdr95, WD40 repeat domain 95, [RH, Score=518, Expect=9e-169]} {Dmel: FBgn0267449, WDY, WD40 Y, [Score=190, Expect=7e-49]} {Celegans: WBGene00008586, snrp-40.1, [Score=70.9, Expect=9e-13]} {Smed: dd_Smed_v6_5437_0_2, dd_Smed_v6_5437_0_2, [RH, Score=1005, Expect=0.0]} {RNA1509_51881, RNA1509_6080} {RNA1310_201.1, RNA1509_51881, RNA1509_6080} {RNA1509_51881, RNA1509_6080, RNA815_1007}
14. MligTC455_10154 7 0.15 Mlig455_046659

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_046659 {REF} {Length: 491} {NoTransDecoderORF} {RNA1509_5197} {RNA1310_86332} {RNA815_1966}
15. MligTC455_48426 50 1.05 Mlig455_007854, Mlig455_021135

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.526

 ANK1, ANK2 0.95 - - - - 0.950 -

Mlig455_007854 {REF} {Length: 1088} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=146.7]; Ankyrin repeats (3 copies) [PF12796.9, score=144.5]; Ankyrin repeat [PF00023.32, score=125.5]; Ankyrin repeat [PF13606.8, score=111.8]; Ankyrin repeats (many copies) [PF13857.8, score=92.8]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=134, Expect=3e-35]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=135, Expect=9e-36]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=133, Expect=4e-35]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=114, Expect=1e-28]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=132, Expect=4e-35]} {RNA1509_23549} {RNA1310_1208} {RNA815_33617}

Mlig455_021135 {REF} {Length: 5292} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=420.3]; Ankyrin repeats (many copies) [PF13637.8, score=328.2]; Ankyrin repeat [PF00023.32, score=322.9]; Ankyrin repeat [PF13606.8, score=282.9]; Ankyrin repeats (many copies) [PF13857.8, score=257.0]; Glutamine amidotransferase domain [PF13537.8, score=23.9]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=365, Expect=3e-107]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=356, Expect=1e-107]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=365, Expect=2e-107]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=325, Expect=1e-96]} {Smed: dd_Smed_v6_2072_0_29, dd_Smed_v6_2072_0_29, [Score=305, Expect=9e-91]} {RNA1509_23549} {RNA1310_1208} {RNA815_7779}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA