M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10154

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10154 7 0.15 Mlig455_046659

Neo: -

Age: -

 Mlig455_046659 {REF} {Length: 491} {NoTransDecoderORF} {RNA1509_5197} {RNA1310_86332} {RNA815_1966}

Cumulative graph for MligTC455_10154

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_10154

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10154 7 0.15 Mlig455_046659

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_046659 {REF} {Length: 491} {NoTransDecoderORF} {RNA1509_5197} {RNA1310_86332} {RNA815_1966}
2. MligTC455_22013 85 1.78 Mlig455_005596, Mlig455_053497, Mlig455_062221

Neo: -

Age: Up-Down-Down

 RTL1 0.998 - - - - 0.998 -

Mlig455_005596 {REF} {Length: 4617} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=122.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.3]; Integrase zinc binding domain [PF17921.3, score=62.4]; Integrase core domain [PF00665.28, score=40.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=31.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=86.3, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.2, Expect=4e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=243, Expect=2e-68]} {RNA1509_38146} {RNA1310_9809} {RNA815_20192}

Mlig455_053497 {REF} {Length: 2290} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=48.6]; 2-cysteine adaptor domain [PF08793.12, score=38.9]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=38.0]; Suppressor of cytokine signalling [PF12610.10, score=19.9]; Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain [PF17927.3, score=19.5]} {RNA1509_39864} {RNA1310_103404} {RNA815_38442}

Mlig455_062221 {REF} {Length: 3363} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=73.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=32.5]; Aspartyl protease [PF13650.8, score=26.8]; PNMA [PF14893.8, score=21.9]; Retroviral aspartyl protease [PF00077.22, score=20.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=62.4, Expect=4e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=179, Expect=3e-46]} {RNA1509_39864} {RNA1310_9809} {RNA815_20192}
3. MligTC455_09522 4 0.09 Mlig455_053609

Neo: -

Age: -

 ZBTB11 0.996 - - - - 0.996 - Mlig455_053609 {REF} {Length: 1672} {Pfam: Integrase zinc binding domain [PF17921.3, score=67.6]; H2C2 zinc finger [PF09337.12, score=25.1]} {Human: ENSG00000066422, ZBTB11, zinc finger and BTB domain containing 11, [RH, Score=58.9, Expect=3e-10]} {Mouse: ENSMUSG00000022601, Zbtb11, zinc finger and BTB domain containing 11, [Score=56.2, Expect=6e-09]} {RNA1509_33402} {RNA1310_64177} {RNA815_44272}
4. MligTC455_01770 3 0.05 Mlig455_066385

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_066385 {REF} {Length: 1023} {NoTransDecoderORF} {RNA1509_22897} {RNA1310_82029}
5. MligTC455_37923 25 0.52 Mlig455_029843

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_029843 {REF} {Length: 657} {NoTransDecoderORF} {RNA1509_32404} {RNA1310_54013.1} {RNA815_36932.1}
6. MligTC455_11603 6 0.12 Mlig455_046639

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_046639 {REF} {Length: 395} {NoTransDecoderORF} {RNA1509_56382} {RNA1310_86332} {RNA815_16344.2}
7. MligTC455_41909 3 0.07 Mlig455_032661

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_032661 {REF} {Length: 1046} {RNA1310_74699} {RNA815_34259}
8. MligTC455_27381 18 0.38 Mlig455_005326, Mlig455_056074, Mlig455_071072

Neo: -

Age: -

 0.972 - - - - 0.972 -

Mlig455_005326 {REF} {Length: 1415} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}

Mlig455_056074 {REF} {Length: 2219} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}

Mlig455_071072 {REF} {Length: 2219} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}
9. MligTC455_00421 18 0.38 Mlig455_015214, Mlig455_027173

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_015214 {REF} {Length: 694} {RNA1310_16130}

Mlig455_027173 {REF} {Length: 692} {RNA1310_16130}
10. MligTC455_57008 10 0.22 Mlig455_044186

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_044186 {REF} {Length: 852} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=46.6]} {RNA1509_47056} {RNA1310_46488.2} {RNA815_14744.1}
11. MligTC455_29859 11 0.22 Mlig455_011021

Neo: -

Age: -

 ITPR1 0.957 - - - - 0.957 - Mlig455_011021 {REF} {Length: 2073} {Pfam: Ion transport protein [PF00520.33, score=19.8]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=153, Expect=2e-38]} {Mouse: ENSMUSG00000030102, Itpr1, inositol 1,4,5-trisphosphate receptor 1, [Score=154, Expect=1e-38]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=138, Expect=1e-33]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=136, Expect=3e-33]} {Smed: dd_Smed_v6_3814_1_2, dd_Smed_v6_3814_1_2, [Score=551, Expect=0.0]} {RNA1509_25537} {RNA1310_434.1} {RNA815_101}
12. MligTC455_53595 20 0.42 Mlig455_067432

Neo: -

Age: -

 SLC24A2 0.957 - - - - 0.957 - Mlig455_067432 {REF} {Length: 4224} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=186.7]} {Human: ENSG00000155886, SLC24A2, solute carrier family 24 member 2, [RH, Score=498, Expect=4e-168]} {Mouse: ENSMUSG00000037996, Slc24a2, solute carrier family 24 (sodium/potassium/calcium exchanger), member 2, [RH, Score=502, Expect=2e-169]} {Dmel: FBgn0028704, Nckx30C, [RH, Score=499, Expect=2e-166]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=223, Expect=3e-64]} {Smed: dd_Smed_v6_5868_0_4, dd_Smed_v6_5868_0_4, [Score=184, Expect=9e-51]} {RNA1509_26587} {RNA1310_76563} {RNA815_21902.1}
13. MligTC455_56067 3 0.07 Mlig455_040324

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_040324 {REF} {Length: 282} {NoTransDecoderORF} {RNA1310_65693} {RNA815_1829.1}
14. MligTC455_09201 3 0.05 Mlig455_053516

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_053516 {REF} {Length: 1488} {Pfam: Integrase zinc binding domain [PF17921.3, score=65.2]; Integrase core domain [PF00665.28, score=41.1]; H2C2 zinc finger [PF09337.12, score=23.7]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=141, Expect=8e-38]} {RNA1310_64177} {RNA815_44272}
15. MligTC455_20215 53 1.1 Mlig455_034733

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_034733 {REF} {Length: 1330} {NoTransDecoderORF} {RNA1310_91476} {RNA815_62025}
16. MligTC455_22272 6 0.13 Mlig455_050013

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_050013 {REF} {Length: 1355} {NoTransDecoderORF} {RNA1509_12830} {RNA1310_79708} {RNA815_9685.1}
17. MligTC455_00754 12 0.24 Mlig455_041596

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_041596 {REF} {Length: 799} {NoTransDecoderORF} {RNA1310_118711} {RNA815_36588}
18. MligTC455_33250 13 0.28 Mlig455_065011

Neo: -

Age: -

 TNN 0.95 - - - - 0.950 - Mlig455_065011 {REF} {Length: 2337} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=71.7]; MANEC domain [PF07502.16, score=20.5]} {Human: ENSG00000120332, TNN, tenascin N, [Score=68.9, Expect=7e-12]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=68.2, Expect=7e-12]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=67.4, Expect=2e-11]} {Dmel: FBgn0031804, CG9500, [Score=77.0, Expect=1e-15]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=62.8, Expect=2e-10]} {RNA1509_53291} {RNA1310_21728} {RNA815_9881}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA