M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33297

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33297 195 4.07 Mlig455_007669

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.996/0.03381

 DLG1 Mlig455_007669 {REF} {Length: 1887} {Pfam: PDZ domain [PF00595.26, score=139.7]; L27_1 [PF09058.12, score=92.9]; PDZ domain [PF17820.3, score=61.3]; PDZ domain [PF13180.8, score=45.4]; Tricorn protease PDZ domain [PF14685.8, score=20.8]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [Score=239, Expect=4e-75]} {Mouse: ENSMUSG00000020886, Dlg4, discs large MAGUK scaffold protein 4, [Score=182, Expect=2e-50]; ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [Score=179, Expect=2e-49]; ENSMUSG00000000881, Dlg3, discs large MAGUK scaffold protein 3, [Score=177, Expect=2e-48]; ENSMUSG00000022770, Dlg1, discs large MAGUK scaffold protein 1, [Score=174, Expect=2e-47]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=236, Expect=2e-69]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=152, Expect=5e-40]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [Score=172, Expect=3e-49]} {RNA1509_24819} {RNA1310_16900} {RNA815_7154}

Cumulative graph for MligTC455_33297

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -7.417 2.685 0.05731 0.55343
RegionR2 2.996 2.685 0.00191 0.03381
RegionR3 1.673 2.685 0.07136 0.47290
RegionR4 0.27 2.685 0.73194 1.00000
RegionR5 1.051 2.685 0.26134 0.58256
RegionR6 2.552 2.685 0.00177 0.05610
RegionR7 0.999 2.685 0.42869 1.00000
RegionR8 -2.123 2.685 0.99950 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.389 2.685 0.99984 1.00000
RegenerationR2 0.469 2.685 0.33256 0.76899
RegenerationR3 0.211 2.685 0.73330 0.95887
RegenerationR4 0.013 2.685 0.97801 1.00000
RegenerationR5 0.885 2.685 0.09182 0.46533
RegenerationR6 -0.656 2.685 0.27230 0.62219
RegenerationBL 2.076 2.685 0.02301 0.16608
RegenerationTP 2.279 2.685 0.06246 0.40432


Genes with expression patterns similar to MligTC455_33297

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33297 195 4.07 Mlig455_007669

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.996/0.03381

 DLG1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007669 {REF} {Length: 1887} {Pfam: PDZ domain [PF00595.26, score=139.7]; L27_1 [PF09058.12, score=92.9]; PDZ domain [PF17820.3, score=61.3]; PDZ domain [PF13180.8, score=45.4]; Tricorn protease PDZ domain [PF14685.8, score=20.8]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [Score=239, Expect=4e-75]} {Mouse: ENSMUSG00000020886, Dlg4, discs large MAGUK scaffold protein 4, [Score=182, Expect=2e-50]; ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [Score=179, Expect=2e-49]; ENSMUSG00000000881, Dlg3, discs large MAGUK scaffold protein 3, [Score=177, Expect=2e-48]; ENSMUSG00000022770, Dlg1, discs large MAGUK scaffold protein 1, [Score=174, Expect=2e-47]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=236, Expect=2e-69]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=152, Expect=5e-40]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [Score=172, Expect=3e-49]} {RNA1509_24819} {RNA1310_16900} {RNA815_7154}
2. MligTC455_05897 665 13.85 Mlig455_049059

Neo: -

Age: -

 LNX2 2.617 0.756 - 0.910 0.951 - - Mlig455_049059 {REF} {Length: 6005} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=182.6]; PDZ domain [PF17820.3, score=100.7]; PDZ domain [PF13180.8, score=57.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=27.9]; RING-type zinc-finger [PF13445.8, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=25.9]; TRAF-type zinc finger [PF02176.20, score=25.1]; zinc-RING finger domain [PF14634.8, score=22.9]; Ring finger domain [PF13639.8, score=22.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.1]} {Human: ENSG00000139517, LNX2, ligand of numb-protein X 2, [Score=427, Expect=2e-138]} {Mouse: ENSMUSG00000016520, Lnx2, ligand of numb-protein X 2, [Score=416, Expect=3e-134]} {Dmel: FBgn0000008, a, arc, [RH, Score=70.9, Expect=4e-12]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=155, Expect=3e-40]} {Smed: dd_Smed_v6_8994_0_2, dd_Smed_v6_8994_0_2, [RH, Score=527, Expect=2e-175]} {RNA1509_14988} {RNA1310_9030} {RNA815_6198}
3. MligTC455_13756 39 0.81 Mlig455_026439

Neo: -

Age: Up-Down-Down

 1.796 0.837 - - 0.959 - - Mlig455_026439 {REF} {Length: 4119} {RNA1509_56548} {RNA1310_29367, RNA1509_56548} {RNA1509_56548, RNA815_18212}
4. MligTC455_28911 375 7.82 Mlig455_065714

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.597

Region-enriched R2: 2.396/0.00344

 1.778 - - - 0.962 0.816 - Mlig455_065714 {REF} {Length: 10556} {TRANSSPLICED} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=35.4]; Aspartyl protease [PF13650.8, score=29.7]; Retroviral aspartyl protease [PF00077.22, score=27.6]; Zinc knuckle [PF00098.25, score=20.4]} {Smed: dd_Smed_v6_16336_0_1, dd_Smed_v6_16336_0_1, [Score=63.2, Expect=5e-10]} {RNA1509_6522} {RNA1310_59.1} {RNA815_29.1}
5. MligTC455_37344 139 2.91 Mlig455_033072

Neo: -

Age: -

 1.69 - - - 0.956 0.734 - Mlig455_033072 {REF} {Length: 3838} {RNA1509_36528} {RNA1310_12514} {RNA815_21020}
6. MligTC455_41510 194 4.04 Mlig455_067738

Neo: -

Age: -

 CDK14 1.666 0.715 - - 0.951 - - Mlig455_067738 {REF} {Length: 5422} {Pfam: Protein kinase domain [PF00069.27, score=227.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.1]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=4e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=1e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=2e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=6e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=5e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=461, Expect=3e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743}
7. MligTC455_40661 365 7.61 Mlig455_034164, Mlig455_040386

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.360

Region-enriched R4: 3.330/0.00442

 0.976 - - - 0.976 - -

Mlig455_034164 {REF} {Length: 711} {TRANSSPLICED} {RNA1509_28209} {RNA1310_26691} {RNA815_14595}

Mlig455_040386 {REF} {Length: 710} {TRANSSPLICED} {RNA1509_28209} {RNA1310_26691} {RNA815_14595}
8. MligTC455_38195 432 9.01 Mlig455_063704

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.492

 TRPM1 0.974 - - - 0.974 - - Mlig455_063704 {REF} {Length: 5184} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=94.9]; Ankyrin repeats (many copies) [PF13637.8, score=83.0]; Ankyrin repeats (many copies) [PF13857.8, score=63.8]; Ankyrin repeat [PF13606.8, score=61.6]; Ankyrin repeat [PF00023.32, score=55.8]; Ion transport protein [PF00520.33, score=53.8]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=132, Expect=2e-30]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=132, Expect=2e-30]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=129, Expect=1e-29]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=131, Expect=3e-30]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=129, Expect=9e-30]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=118, Expect=2e-26]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=79.0, Expect=2e-14]} {Smed: dd_Smed_v6_10717_0_1, dd_Smed_v6_10717_0_1, [RH, Score=189, Expect=2e-49]} {RNA1509_33075, RNA1509_41062, RNA1509_48059, RNA1509_9269} {RNA1310_4916, RNA1509_33075, RNA1509_41062, RNA1509_48059, RNA1509_9269} {RNA1509_33075, RNA1509_41062, RNA1509_48059, RNA1509_9269, RNA815_3093}
9. MligTC455_08745 741 15.43 Mlig455_017726, Mlig455_058725

Neo: -

Age: Up-Down-Down

 TNS1 0.971 - - - 0.971 - -

Mlig455_017726 {REF} {Length: 5545} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=58.2]; SH2 domain [PF00017.26, score=36.7]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=225, Expect=1e-62]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=225, Expect=2e-65]} {Dmel: FBgn0000244, by, blistery, [Score=181, Expect=6e-49]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=206, Expect=1e-61]} {Smed: dd_Smed_v6_4454_0_2, dd_Smed_v6_4454_0_2, [Score=197, Expect=4e-55]} {RNA1509_9275} {RNA1310_27665} {RNA815_493.1}

Mlig455_058725 {REF} {Length: 7004} {Pfam: SH2 domain [PF00017.26, score=41.5]; Phosphotyrosine-binding domain [PF08416.15, score=21.5]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=211, Expect=2e-60]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=211, Expect=7e-62]} {Dmel: FBgn0000244, by, blistery, [Score=167, Expect=2e-45]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=197, Expect=7e-60]} {Smed: dd_Smed_v6_4454_0_2, dd_Smed_v6_4454_0_2, [Score=172, Expect=2e-47]} {RNA1509_9275} {RNA1310_1834} {RNA815_493.1}
10. MligTC455_52723 157 3.27 Mlig455_032070

Neo: -

Age: logFC(26M/2M)=-0.577

 PRKCB 0.958 - - - 0.958 - - Mlig455_032070 {REF} {Length: 4571} {Pfam: Protein kinase domain [PF00069.27, score=153.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=90.9]; Protein kinase C terminal domain [PF00433.26, score=32.6]} {Human: ENSG00000166501, PRKCB, protein kinase C beta, [Score=377, Expect=9e-128]} {Mouse: ENSMUSG00000052889, Prkcb, protein kinase C, beta, [Score=376, Expect=1e-127]} {Dmel: FBgn0003091, Pkc53E, Protein C kinase 53E, [Score=367, Expect=6e-126]} {Celegans: WBGene00004033, pkc-2, Protein kinase C-like 2, [Score=355, Expect=2e-119]} {Smed: dd_Smed_v6_4244_0_2, dd_Smed_v6_4244_0_2, [Score=385, Expect=2e-131]} {RNA1509_41314} {RNA1310_23181} {RNA815_9794.2}
11. MligTC455_49419 688 14.34 Mlig455_026923, Mlig455_027016, Mlig455_027080

Neo: -

Age: logFC(26M/2M)=-0.472

Region-enriched R4: 1.839/0.01555

Regeneration-upregulated BL: 2.229

Regeneration-enriched BL: 2.229

 ZDHHC22 0.957 - - - 0.957 - -

Mlig455_026923 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=84.9]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=79.3, Expect=3e-16]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=85.1, Expect=2e-18]} {Dmel: FBgn0034729, CG10344, [RH, Score=96.3, Expect=2e-22]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=103, Expect=1e-24]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=85.1, Expect=3e-18]} {RNA1509_34618} {RNA1310_26262} {RNA815_5957}

Mlig455_027016 {REF} {Length: 2246} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=86.9]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=80.9, Expect=7e-17]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=86.7, Expect=4e-19]} {Dmel: FBgn0034729, CG10344, [RH, Score=96.7, Expect=8e-23]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=105, Expect=6e-26]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=88.2, Expect=2e-19]} {RNA1509_34618} {RNA1310_24897} {RNA815_5957}

Mlig455_027080 {REF} {Length: 2356} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=84.5]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=79.7, Expect=2e-16]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=85.5, Expect=1e-18]} {Dmel: FBgn0034729, CG10344, [RH, Score=97.8, Expect=6e-23]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=105, Expect=2e-25]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=85.5, Expect=3e-18]} {RNA1509_34618, RNA1509_54149} {RNA1310_26262, RNA1509_54149} {RNA1509_54149, RNA815_5957}
12. MligTC455_40065 58 1.22 Mlig455_069280

Neo: -

Age: Up-Down-Up

 0.956 - - - 0.956 - - Mlig455_069280 {REF} {Length: 3092} {Pfam: Coiled-coil domain-containing protein 154 [PF15450.8, score=35.7]; Apolipoprotein A1/A4/E domain [PF01442.20, score=19.3]} {Smed: dd_Smed_v6_10236_0_1, dd_Smed_v6_10236_0_1, [Score=236, Expect=1e-67]} {RNA1509_48196} {RNA1310_30411, RNA1509_48196} {RNA1509_48196, RNA815_45200}
13. MligTC455_13099 93 1.93 Mlig455_057504

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_057504 {REF} {Length: 2002} {RNA1310_15168} {RNA815_31864}
14. MligTC455_39189 128 2.66 Mlig455_016917, Mlig455_016929, Mlig455_017017

Neo: -

Age: -

 PCDH1 0.951 - - - 0.951 - -

Mlig455_016917 {REF} {Length: 3761} {Pfam: Cadherin domain [PF00028.19, score=288.4]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.9]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=9e-80]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=286, Expect=2e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=235, Expect=1e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=169, Expect=2e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=363, Expect=5e-107]} {RNA1310_29073} {RNA815_29381}

Mlig455_016929 {REF} {Length: 3871} {Pfam: Cadherin domain [PF00028.19, score=288.0]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.4]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=4e-79]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=285, Expect=3e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=234, Expect=2e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=170, Expect=1e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=364, Expect=1e-107]} {RNA1310_29073} {RNA815_29381}

Mlig455_017017 {REF} {Length: 4792} {Pfam: Cadherin domain [PF00028.19, score=288.8]; Cadherin-like [PF08266.14, score=26.2]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=281, Expect=1e-78]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=267, Expect=4e-73]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=282, Expect=3e-79]} {Dmel: FBgn0284247, ds, dachsous, [Score=233, Expect=5e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=3e-44]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=368, Expect=7e-109]} {RNA1310_29073} {RNA815_29381}
15. MligTC455_50505 454 9.46 Mlig455_050904

Neo: -

Age: Down-Up-Up

 0.951 - - - 0.951 - - Mlig455_050904 {REF} {Length: 1806} {RNA1509_31617} {RNA1310_16888, RNA1509_31617} {RNA1509_31617, RNA815_20985}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA