TomoSeq data search

Data search

Results for MligTC455_39189

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39189

128

2.66

Mlig455_016917, Mlig455_016929, Mlig455_017017

Neo: -

Age: -

PCDH1

Mlig455_016917 {REF} {Length: 3761} {Pfam: Cadherin domain [PF00028.19, score=288.4]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.9]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=9e-80]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=286, Expect=2e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=235, Expect=1e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=169, Expect=2e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=363, Expect=5e-107]} {RNA1310_29073} {RNA815_29381}

Mlig455_016929 {REF} {Length: 3871} {Pfam: Cadherin domain [PF00028.19, score=288.0]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.4]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=4e-79]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=285, Expect=3e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=234, Expect=2e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=170, Expect=1e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=364, Expect=1e-107]} {RNA1310_29073} {RNA815_29381}

Mlig455_017017 {REF} {Length: 4792} {Pfam: Cadherin domain [PF00028.19, score=288.8]; Cadherin-like [PF08266.14, score=26.2]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=281, Expect=1e-78]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=267, Expect=4e-73]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=282, Expect=3e-79]} {Dmel: FBgn0284247, ds, dachsous, [Score=233, Expect=5e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=3e-44]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=368, Expect=7e-109]} {RNA1310_29073} {RNA815_29381}

Cumulative graph for MligTC455_39189

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.891	2.287	1.00000	1.00000
RegionR2	2.063	2.287	0.15030	0.48402
RegionR3	0.776	2.287	0.51306	1.00000
RegionR4	1.995	2.287	0.12234	0.35113
RegionR5	0.228	2.287	0.70410	1.00000
RegionR6	0.14	2.287	0.73865	1.00000
RegionR7	2.382	2.287	0.09349	0.58497
RegionR8	-3.693	2.287	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.501	2.287	0.99996	1.00000
RegenerationR2	0.53	2.287	0.55946	0.89830
RegenerationR3	0.928	2.287	0.39247	0.79752
RegenerationR4	0.815	2.287	0.42515	0.82835
RegenerationR5	1.991	2.287	0.04676	0.35053
RegenerationR6	1.731	2.287	0.12218	0.43003
RegenerationBL	2.544	2.287	0.10795	0.38794
RegenerationTP	1.399	2.287	0.51780	0.91274

Genes with expression patterns similar to MligTC455_39189

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39189	128	2.66	Mlig455_016917, Mlig455_016929, Mlig455_017017	Neo: - Age: -	PCDH1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_016917 {REF} {Length: 3761} {Pfam: Cadherin domain [PF00028.19, score=288.4]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.9]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=9e-80]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=286, Expect=2e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=235, Expect=1e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=169, Expect=2e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=363, Expect=5e-107]} {RNA1310_29073} {RNA815_29381} Mlig455_016929 {REF} {Length: 3871} {Pfam: Cadherin domain [PF00028.19, score=288.0]; Cadherin-like [PF08266.14, score=26.1]; Cadherin-like [PF16184.7, score=22.4]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=285, Expect=4e-79]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=285, Expect=3e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=234, Expect=2e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=170, Expect=1e-42]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=364, Expect=1e-107]} {RNA1310_29073} {RNA815_29381} Mlig455_017017 {REF} {Length: 4792} {Pfam: Cadherin domain [PF00028.19, score=288.8]; Cadherin-like [PF08266.14, score=26.2]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=281, Expect=1e-78]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=267, Expect=4e-73]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=282, Expect=3e-79]} {Dmel: FBgn0284247, ds, dachsous, [Score=233, Expect=5e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=3e-44]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=368, Expect=7e-109]} {RNA1310_29073} {RNA815_29381}
2.	MligTC455_05897	665	13.85	Mlig455_049059	Neo: - Age: -	LNX2	1.704	-	-	0.734	0.970	-	-	Mlig455_049059 {REF} {Length: 6005} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=182.6]; PDZ domain [PF17820.3, score=100.7]; PDZ domain [PF13180.8, score=57.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=27.9]; RING-type zinc-finger [PF13445.8, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=25.9]; TRAF-type zinc finger [PF02176.20, score=25.1]; zinc-RING finger domain [PF14634.8, score=22.9]; Ring finger domain [PF13639.8, score=22.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.1]} {Human: ENSG00000139517, LNX2, ligand of numb-protein X 2, [Score=427, Expect=2e-138]} {Mouse: ENSMUSG00000016520, Lnx2, ligand of numb-protein X 2, [Score=416, Expect=3e-134]} {Dmel: FBgn0000008, a, arc, [RH, Score=70.9, Expect=4e-12]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=155, Expect=3e-40]} {Smed: dd_Smed_v6_8994_0_2, dd_Smed_v6_8994_0_2, [RH, Score=527, Expect=2e-175]} {RNA1509_14988} {RNA1310_9030} {RNA815_6198}
3.	MligTC455_30496	506	10.54	Mlig455_026882	Neo: - Age: logFC(26M/2M)=0.358 Region-enriched R4: 2.152/0.01690	MYO6	0.98	-	-	-	0.980	-	-	Mlig455_026882 {REF} {Length: 5927} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=758.2]; Myosin VI cargo binding domain [PF16521.7, score=129.6]; Myosin N-terminal SH3-like domain [PF02736.21, score=30.1]} {Human: ENSG00000196586, MYO6, myosin VI, [Score=910, Expect=0.0]} {Mouse: ENSMUSG00000033577, Myo6, myosin VI, [Score=896, Expect=0.0]} {Dmel: FBgn0011225, jar, jaguar, [Score=881, Expect=0.0]} {Celegans: WBGene00004969, spe-15, [Score=775, Expect=0.0]} {Smed: dd_Smed_v6_4503_0_1, dd_Smed_v6_4503_0_1, [Score=844, Expect=0.0]} {RNA1509_1417} {RNA1310_883} {RNA815_546}
4.	MligTC455_08745	741	15.43	Mlig455_017726, Mlig455_058725	Neo: - Age: Up-Down-Down	TNS1	0.97	-	-	-	0.970	-	-	Mlig455_017726 {REF} {Length: 5545} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=58.2]; SH2 domain [PF00017.26, score=36.7]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=225, Expect=1e-62]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=225, Expect=2e-65]} {Dmel: FBgn0000244, by, blistery, [Score=181, Expect=6e-49]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=206, Expect=1e-61]} {Smed: dd_Smed_v6_4454_0_2, dd_Smed_v6_4454_0_2, [Score=197, Expect=4e-55]} {RNA1509_9275} {RNA1310_27665} {RNA815_493.1} Mlig455_058725 {REF} {Length: 7004} {Pfam: SH2 domain [PF00017.26, score=41.5]; Phosphotyrosine-binding domain [PF08416.15, score=21.5]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=211, Expect=2e-60]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=211, Expect=7e-62]} {Dmel: FBgn0000244, by, blistery, [Score=167, Expect=2e-45]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=197, Expect=7e-60]} {Smed: dd_Smed_v6_4454_0_2, dd_Smed_v6_4454_0_2, [Score=172, Expect=2e-47]} {RNA1509_9275} {RNA1310_1834} {RNA815_493.1}
5.	MligTC455_38756	1625	33.85	Mlig455_004697, Mlig455_004770, Mlig455_004857	Neo: - Age: - Regeneration-upregulated BL: 1.787 Regeneration-enriched BL: 1.787		0.966	-	-	-	0.966	-	-	Mlig455_004697 {REF} {Length: 1892} {RNA1509_45157} {RNA1310_17382} {RNA815_6935.1} Mlig455_004770 {REF} {Length: 1735} {RNA1509_45157} {RNA1310_17382} {RNA815_6935.1} Mlig455_004857 {REF} {Length: 3173} {TRANSSPLICED} {Dmel: FBgn0032748, CG10492, [Score=56.2, Expect=1e-07]} {Smed: dd_Smed_v6_11680_0_1, dd_Smed_v6_11680_0_1, [RH, Score=48.5, Expect=1e-05]} {RNA1509_11543, RNA1509_45157} {RNA1310_16859.1, RNA1509_11543, RNA1509_45157} {RNA1509_11543, RNA1509_45157, RNA815_6935.1}
6.	MligTC455_20368	645	13.44	Mlig455_001669	Neo: - Age: Up-Down-Down	TENM2	0.96	-	-	-	0.960	-	-	Mlig455_001669 {REF} {Length: 10472} {Pfam: Laminin G domain [PF02210.26, score=208.8]; Laminin G domain [PF00054.25, score=123.9]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=79.4]; WD domain, G-beta repeat [PF00400.34, score=56.1]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=22.8]} {Human: ENSG00000145934, TENM2, teneurin transmembrane protein 2, [Score=90.9, Expect=4e-17]} {Mouse: ENSMUSG00000049336, Tenm2, teneurin transmembrane protein 2, [Score=94.0, Expect=3e-18]} {Dmel: FBgn0000463, Dl, dorsal, [Score=83.6, Expect=2e-15]} {Celegans: WBGene00001609, glp-1, [Score=80.5, Expect=2e-14]} {Smed: dd_Smed_v6_4789_0_2, dd_Smed_v6_4789_0_2, [Score=365, Expect=4e-101]} {RNA1509_3970} {RNA1310_358.1} {RNA815_301}
7.	MligTC455_41510	194	4.04	Mlig455_067738	Neo: - Age: -	CDK14	0.959	-	-	-	0.959	-	-	Mlig455_067738 {REF} {Length: 5422} {Pfam: Protein kinase domain [PF00069.27, score=227.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.1]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=4e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=1e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=2e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=6e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=5e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=461, Expect=3e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743}
8.	MligTC455_50505	454	9.46	Mlig455_050904	Neo: - Age: Down-Up-Up		0.958	-	-	-	0.958	-	-	Mlig455_050904 {REF} {Length: 1806} {RNA1509_31617} {RNA1310_16888, RNA1509_31617} {RNA1509_31617, RNA815_20985}
9.	MligTC455_49419	688	14.34	Mlig455_026923, Mlig455_027016, Mlig455_027080	Neo: - Age: logFC(26M/2M)=-0.472 Region-enriched R4: 1.839/0.01555 Regeneration-upregulated BL: 2.229 Regeneration-enriched BL: 2.229	ZDHHC22	0.954	-	-	-	0.954	-	-	Mlig455_026923 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=84.9]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=79.3, Expect=3e-16]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=85.1, Expect=2e-18]} {Dmel: FBgn0034729, CG10344, [RH, Score=96.3, Expect=2e-22]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=103, Expect=1e-24]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=85.1, Expect=3e-18]} {RNA1509_34618} {RNA1310_26262} {RNA815_5957} Mlig455_027016 {REF} {Length: 2246} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=86.9]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=80.9, Expect=7e-17]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=86.7, Expect=4e-19]} {Dmel: FBgn0034729, CG10344, [RH, Score=96.7, Expect=8e-23]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=105, Expect=6e-26]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=88.2, Expect=2e-19]} {RNA1509_34618} {RNA1310_24897} {RNA815_5957} Mlig455_027080 {REF} {Length: 2356} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=84.5]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [RH, Score=79.7, Expect=2e-16]} {Mouse: ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [RH, Score=85.5, Expect=1e-18]} {Dmel: FBgn0034729, CG10344, [RH, Score=97.8, Expect=6e-23]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [RH, Score=105, Expect=2e-25]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=85.5, Expect=3e-18]} {RNA1509_34618, RNA1509_54149} {RNA1310_26262, RNA1509_54149} {RNA1509_54149, RNA815_5957}
10.	MligTC455_41327	6480	135	Mlig455_007904, Mlig455_008008	Neo: - Age: Down-Up-Down Regeneration-upregulated BL: 2.831 Regeneration-enriched BL: 2.831		0.952	-	-	-	0.952	-	-	Mlig455_007904 {REF} {Length: 2479} {Pfam: F5/8 type C domain [PF00754.27, score=52.7]} {Dmel: FBgn0001083, fw, furrowed, [Score=50.4, Expect=4e-06]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=46.2, Expect=4e-06]} {RNA1509_53019} {RNA1310_2657.1} {RNA815_2454} Mlig455_008008 {REF} {Length: 2766} {Pfam: F5/8 type C domain [PF00754.27, score=48.7]} {Dmel: FBgn0001083, fw, furrowed, [Score=50.4, Expect=4e-06]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=45.8, Expect=7e-06]} {RNA1509_53019} {RNA1310_2657.1} {RNA815_2454}
11.	MligTC455_33297	195	4.07	Mlig455_007669	Neo: - Age: Down-Up-Up Region-enriched R2: 2.996/0.03381	DLG1	0.951	-	-	-	0.951	-	-	Mlig455_007669 {REF} {Length: 1887} {Pfam: PDZ domain [PF00595.26, score=139.7]; L27_1 [PF09058.12, score=92.9]; PDZ domain [PF17820.3, score=61.3]; PDZ domain [PF13180.8, score=45.4]; Tricorn protease PDZ domain [PF14685.8, score=20.8]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [Score=239, Expect=4e-75]} {Mouse: ENSMUSG00000020886, Dlg4, discs large MAGUK scaffold protein 4, [Score=182, Expect=2e-50]; ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [Score=179, Expect=2e-49]; ENSMUSG00000000881, Dlg3, discs large MAGUK scaffold protein 3, [Score=177, Expect=2e-48]; ENSMUSG00000022770, Dlg1, discs large MAGUK scaffold protein 1, [Score=174, Expect=2e-47]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=236, Expect=2e-69]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=152, Expect=5e-40]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [Score=172, Expect=3e-49]} {RNA1509_24819} {RNA1310_16900} {RNA815_7154}
12.	MligTC455_18312	725	15.11	Mlig455_060240	Neo: Irradiation Age: Up-Down-Up Region-specific R4: 3.855 Region-enriched R4: 2.222/0.00000	ERBB4	0.95	-	-	-	-	0.950	-	Mlig455_060240 {REF} {Length: 4612} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=262.2]; Protein kinase domain [PF00069.27, score=123.3]; Growth factor receptor domain IV [PF14843.8, score=58.1]; Furin-like cysteine rich region [PF00757.22, score=55.9]; Receptor L domain [PF01030.26, score=40.8]} {Human: ENSG00000178568, ERBB4, erb-b2 receptor tyrosine kinase 4, [Score=412, Expect=6e-124]; ENSG00000141736, ERBB2, erb-b2 receptor tyrosine kinase 2, [Score=411, Expect=8e-124]} {Mouse: ENSMUSG00000062209, Erbb4, erb-b2 receptor tyrosine kinase 4, [Score=415, Expect=4e-125]; ENSMUSG00000062312, Erbb2, erb-b2 receptor tyrosine kinase 2, [Score=407, Expect=9e-123]; ENSMUSG00000020122, Egfr, epidermal growth factor receptor, [Score=406, Expect=1e-122]} {Dmel: FBgn0003731, Egfr, Epidermal growth factor receptor, [Score=283, Expect=1e-78]} {Celegans: WBGene00002299, let-23, Receptor tyrosine-protein kinase let-23, [Score=242, Expect=2e-65]} {Smed: dd_Smed_v6_11310_0_1, dd_Smed_v6_11310_0_1, [Score=290, Expect=5e-81]} {RNA1509_22335} {RNA1310_6535} {RNA815_32727}

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