M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33370

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33370 737 15.36 Mlig455_007477, Mlig455_067514

Neo: -

Age: logFC(26M/2M)=0.602

Mlig455_007477 {REF} {Length: 3793} {Pfam: DDE superfamily endonuclease [PF13358.8, score=29.4]; Homeodomain-like domain [PF13384.8, score=20.1]} {Smed: dd_Smed_v6_16239_0_2, dd_Smed_v6_16239_0_2, [Score=62.4, Expect=1e-11]} {RNA1509_58678} {RNA1310_7844.1} {RNA815_2198.1}

Mlig455_067514 {REF} {Length: 1034} {Pfam: DDE superfamily endonuclease [PF13358.8, score=29.7]; Homeodomain-like domain [PF13384.8, score=20.1]} {Smed: dd_Smed_v6_16239_0_3, dd_Smed_v6_16239_0_3, [Score=62.4, Expect=1e-11]} {RNA1310_122928}

Cumulative graph for MligTC455_33370

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.481 4.173 0.11490 0.70198
RegionR2 0.076 4.173 0.88396 1.00000
RegionR3 0.633 4.173 0.14669 0.65134
RegionR4 0.399 4.173 0.47377 0.80151
RegionR5 -0.092 4.173 0.86048 1.00000
RegionR6 0.242 4.173 0.59658 1.00000
RegionR7 0.761 4.173 0.12207 0.65952
RegionR8 0.463 4.173 0.43002 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.348 4.173 0.23902 0.96582
RegenerationR2 -0.015 4.173 0.97300 1.00000
RegenerationR3 -0.315 4.173 0.50778 0.85990
RegenerationR4 0.303 4.173 0.55516 0.89431
RegenerationR5 0.786 4.173 0.10098 0.48326
RegenerationR6 -0.691 4.173 0.19326 0.53216
RegenerationBL -2.438 4.173 0.00085 0.02052
RegenerationTP 0.455 4.173 0.38256 0.81728


Genes with expression patterns similar to MligTC455_33370

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33370 737 15.36 Mlig455_007477, Mlig455_067514

Neo: -

Age: logFC(26M/2M)=0.602

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_007477 {REF} {Length: 3793} {Pfam: DDE superfamily endonuclease [PF13358.8, score=29.4]; Homeodomain-like domain [PF13384.8, score=20.1]} {Smed: dd_Smed_v6_16239_0_2, dd_Smed_v6_16239_0_2, [Score=62.4, Expect=1e-11]} {RNA1509_58678} {RNA1310_7844.1} {RNA815_2198.1}

Mlig455_067514 {REF} {Length: 1034} {Pfam: DDE superfamily endonuclease [PF13358.8, score=29.7]; Homeodomain-like domain [PF13384.8, score=20.1]} {Smed: dd_Smed_v6_16239_0_3, dd_Smed_v6_16239_0_3, [Score=62.4, Expect=1e-11]} {RNA1310_122928}
2. MligTC455_06036 344 7.17 Mlig455_033356

Neo: -

Age: -

 PRKAG2 0.984 - - - - 0.984 - Mlig455_033356 {REF} {Length: 3376} {Pfam: CBS domain [PF00571.30, score=98.5]} {Human: ENSG00000106617, PRKAG2, protein kinase AMP-activated non-catalytic subunit gamma 2, [Score=340, Expect=1e-114]; ENSG00000181929, PRKAG1, protein kinase AMP-activated non-catalytic subunit gamma 1, [Score=340, Expect=2e-114]} {Mouse: ENSMUSG00000028944, Prkag2, protein kinase, AMP-activated, gamma 2 non-catalytic subunit, [Score=346, Expect=7e-114]; ENSMUSG00000067713, Prkag1, protein kinase, AMP-activated, gamma 1 non-catalytic subunit, [Score=339, Expect=1e-114]} {Dmel: FBgn0264357, SNF4Agamma, SNF4/AMP-activated protein kinase gamma subunit, [Score=353, Expect=3e-117]} {Celegans: WBGene00013732, aakg-1, AMP-Activated protein Kinase Gamma subunit, [Score=289, Expect=4e-93]} {Smed: dd_Smed_v6_4877_0_1, dd_Smed_v6_4877_0_1, [Score=298, Expect=2e-98]} {RNA1509_48129} {RNA1310_7406.2} {RNA815_1861}
3. MligTC455_06035 315 6.55 Mlig455_033343

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_033343 {REF} {Length: 515} {NoTransDecoderORF} {RNA1509_40958} {RNA1310_25752.1} {RNA815_37868}
4. MligTC455_17001 243 5.06 Mlig455_058536

Neo: -

Age: -

 PDHX 0.962 - - - - 0.962 - Mlig455_058536 {REF} {Length: 3130} {Pfam: Biotin-requiring enzyme [PF00364.24, score=58.5]; e3 binding domain [PF02817.19, score=21.9]} {Human: ENSG00000110435, PDHX, pyruvate dehydrogenase complex component X, [Score=120, Expect=1e-28]} {Mouse: ENSMUSG00000010914, Pdhx, pyruvate dehydrogenase complex, component X, [Score=132, Expect=8e-33]} {Dmel: FBgn0283658, muc, midline uncoordinated, [Score=76.6, Expect=1e-14]} {Celegans: WBGene00009082, dlat-1, Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial, [Score=87.4, Expect=4e-18]} {Smed: dd_Smed_v6_4750_0_1, dd_Smed_v6_4750_0_1, [Score=144, Expect=8e-38]} {RNA1509_34085} {RNA1310_25322, RNA1509_34085} {RNA1509_34085, RNA815_22388}
5. MligTC455_19359 1441 30.02 Mlig455_010318

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.258

 0.962 - - - - 0.962 - Mlig455_010318 {REF} {Length: 851} {RNA1509_15410, RNA1509_52437} {RNA1310_43315.2, RNA1509_15410, RNA1509_52437} {RNA1509_15410, RNA1509_52437, RNA815_22018.1}
6. MligTC455_29816 317 6.61 Mlig455_067302

Neo: -

Age: Up-Down-Down

 RNF31 0.961 - - - - 0.961 - Mlig455_067302 {REF} {Length: 6139} {TRANSSPLICED} {Pfam: E3 Ubiquitin Ligase RBR C-terminal domain [PF18091.3, score=99.7]; IBR domain, a half RING-finger domain [PF01485.23, score=33.9]} {Human: ENSG00000285152, RNF31, ring finger protein 31, [RH, Score=308, Expect=2e-86]; ENSG00000092098, RNF31, ring finger protein 31, [RH, Score=308, Expect=2e-86]} {Mouse: ENSMUSG00000047098, Rnf31, ring finger protein 31, [Score=301, Expect=2e-84]} {Dmel: FBgn0031857, LUBEL, Linear Ubiquitin E3 ligase, [RH, Score=256, Expect=3e-68]} {Smed: dd_Smed_v6_4025_0_1, dd_Smed_v6_4025_0_1, [RH, Score=180, Expect=9e-47]} {RNA1509_4535} {RNA1310_1489} {RNA815_1870.1}
7. MligTC455_44344 105 2.18 Mlig455_034809

Neo: -

Age: -

Region-enriched R2: 4.521/0.01555

 ECE2 0.96 - - - 0.960 - - Mlig455_034809 {REF} {Length: 2882} {Pfam: Peptidase family M13 [PF05649.15, score=83.7]; Peptidase family M13 [PF01431.23, score=48.1]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=131, Expect=7e-31]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=130, Expect=1e-30]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=127, Expect=9e-30]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=127, Expect=1e-29]} {Dmel: FBgn0029843, Nep1, Neprilysin 1, [Score=108, Expect=8e-24]} {Celegans: WBGene00017842, nep-12, NEPrilysin metallopeptidase family, [Score=106, Expect=2e-23]} {Smed: dd_Smed_v6_30500_0_1, dd_Smed_v6_30500_0_1, [RH, Score=60.1, Expect=2e-09]} {RNA1310_33925} {RNA815_33631}
8. MligTC455_14975 173 3.61 Mlig455_050558, Mlig455_050588

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_050558 {REF} {Length: 1652} {RNA1310_120172}

Mlig455_050588 {REF} {Length: 1652} {NoTransDecoderORF} {RNA1310_120172}
9. MligTC455_34723 441 9.2 Mlig455_051959

Neo: -

Age: Up-Down-Down

 NIM1K 0.959 - - - - 0.959 - Mlig455_051959 {REF} {Length: 3455} {Pfam: Protein kinase domain [PF00069.27, score=116.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Kinase-like [PF14531.8, score=18.5]} {Human: ENSG00000177453, NIM1K, NIM1 serine/threonine protein kinase, [Score=240, Expect=1e-76]} {Mouse: ENSMUSG00000095930, Nim1k, NIM1 serine/threonine protein kinase, [Score=241, Expect=4e-77]} {Dmel: FBgn0031299, CG4629, [Score=152, Expect=3e-42]} {Celegans: WBGene00009867, F49C5.4, [Score=182, Expect=8e-54]} {Smed: dd_Smed_v6_15794_0_1, dd_Smed_v6_15794_0_1, [Score=214, Expect=1e-66]} {RNA1509_24864, RNA1509_26319} {RNA1310_21151.1, RNA1509_24864} {RNA1509_24864, RNA815_8109.1}
10. MligTC455_24528 48 1 Mlig455_015931

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.146

 0.958 - - - - 0.958 - Mlig455_015931 {REF} {Length: 3169} {Pfam: Lectin C-type domain [PF00059.23, score=33.4]} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [RH, Score=73.2, Expect=2e-15]} {RNA1509_15755} {RNA1310_58305} {RNA815_34329}
11. MligTC455_18823 284 5.91 Mlig455_063063

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_063063 {REF} {Length: 1112} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23384} {RNA1310_34309, RNA1509_23384} {RNA1509_23384, RNA815_18125.1}
12. MligTC455_37051 372 7.75 Mlig455_036602, Mlig455_036642

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.299

 DNAH7 0.953 - - - - 0.953 -

Mlig455_036602 {REF} {Length: 11684} {TRANSSPLICED} {Pfam: Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=514.7]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=397.8]; P-loop containing dynein motor region [PF12775.9, score=249.2]; Dynein heavy chain AAA lid domain [PF17852.3, score=89.9]; AAA domain (dynein-related subfamily) [PF07728.16, score=55.6]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=29.8]; AAA domain [PF13401.8, score=22.7]; RNA helicase [PF00910.24, score=22.3]; AAA ATPase domain [PF13191.8, score=20.1]} {Human: ENSG00000118997, DNAH7, dynein axonemal heavy chain 7, [Score=1815, Expect=0.0]} {Mouse: ENSMUSG00000096141, Dnah7a, dynein, axonemal, heavy chain 7A, [Score=1810, Expect=0.0]; ENSMUSG00000101337, Dnah7c, dynein, axonemal, heavy chain 7C, [Score=1807, Expect=0.0]; ENSMUSG00000041144, Dnah7b, dynein, axonemal, heavy chain 7B, [Score=1800, Expect=0.0]} {Dmel: FBgn0013810, Dhc36C, Dynein heavy chain at 36C, [Score=1600, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=625, Expect=0.0]} {Smed: dd_Smed_v6_10846_0_1, dd_Smed_v6_10846_0_1, [Score=1468, Expect=0.0]} {RNA1509_8248} {RNA1310_99} {RNA815_595}

Mlig455_036642 {REF} {Length: 12783} {TRANSSPLICED} {Pfam: Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=511.4]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=488.0]; Dynein heavy chain C-terminal domain [PF18199.3, score=380.3]; P-loop containing dynein motor region D4 [PF12780.9, score=368.2]; ATP-binding dynein motor region [PF12781.9, score=319.5]; P-loop containing dynein motor region [PF12775.9, score=278.9]; Dynein heavy chain AAA lid domain [PF18198.3, score=202.7]; Microtubule-binding stalk of dynein motor [PF12777.9, score=184.2]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=154.9]; Dynein heavy chain AAA lid domain [PF17852.3, score=107.4]; AAA+ lid domain [PF17857.3, score=72.9]; AAA domain (dynein-related subfamily) [PF07728.16, score=63.5]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=31.7]; AAA domain [PF13401.8, score=29.0]; AAA ATPase domain [PF13191.8, score=21.8]} {Human: ENSG00000118997, DNAH7, dynein axonemal heavy chain 7, [Score=5221, Expect=0.0]} {Mouse: ENSMUSG00000101337, Dnah7c, dynein, axonemal, heavy chain 7C, [Score=5215, Expect=0.0]; ENSMUSG00000041144, Dnah7b, dynein, axonemal, heavy chain 7B, [Score=5209, Expect=0.0]; ENSMUSG00000096141, Dnah7a, dynein, axonemal, heavy chain 7A, [Score=5197, Expect=0.0]} {Dmel: FBgn0013810, Dhc36C, Dynein heavy chain at 36C, [RH, Score=4322, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=709, Expect=0.0]} {Smed: dd_Smed_v6_5350_0_1, dd_Smed_v6_5350_0_1, [RH, Score=4284, Expect=0.0]} {RNA1509_8248} {RNA1310_99} {RNA815_595}
13. MligTC455_31908 1011 21.07 Mlig455_018835, Mlig455_018847, Mlig455_019651, Mlig455_028859, Mlig455_029316, Mlig455_053198, Mlig455_055008, Mlig455_057607, Mlig455_059271, Mlig455_059778, Mlig455_060484, Mlig455_067924

Neo: -

Age: Up-Down-Down

 0.952 - - - - 0.952 -

Mlig455_018835 {REF} {Length: 972} {RNA1509_59141} {RNA1310_2129.2} {RNA815_36885}

Mlig455_018847 {REF} {Length: 728} {RNA1509_59141} {RNA1310_6711.2} {RNA815_36885}

Mlig455_019651 {REF} {Length: 3110} {RNA1509_28299} {RNA1310_2129.1} {RNA815_8926}

Mlig455_028859 {REF} {Length: 4548} {RNA1509_6194} {RNA1310_6711.1} {RNA815_15794}

Mlig455_029316 {REF} {Length: 8604} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}

Mlig455_053198 {REF} {Length: 9565} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}

Mlig455_055008 {REF} {Length: 9883} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}

Mlig455_057607 {REF} {Length: 9892} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}

Mlig455_059271 {REF} {Length: 9896} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}

Mlig455_059778 {REF} {Length: 9869} {RNA1509_47689, RNA1509_6194} {RNA1310_2129.1, RNA1509_47689} {RNA1509_47689, RNA815_2266}

Mlig455_060484 {REF} {Length: 5720} {RNA1509_6194} {RNA1310_2129.1} {RNA815_8926}

Mlig455_067924 {REF} {Length: 9889} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}
14. MligTC455_51299 435 9.06 Mlig455_004044

Neo: -

Age: -

 NCOR1 0.952 - - - - 0.952 - Mlig455_004044 {REF} {Length: 5997} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=23.3]} {Human: ENSG00000141027, NCOR1, nuclear receptor corepressor 1, [Score=179, Expect=2e-44]; ENSG00000196498, NCOR2, nuclear receptor corepressor 2, [Score=174, Expect=4e-43]} {Mouse: ENSMUSG00000018501, Ncor1, nuclear receptor co-repressor 1, [Score=178, Expect=2e-44]; ENSMUSG00000029478, Ncor2, nuclear receptor co-repressor 2, [Score=177, Expect=5e-44]} {Dmel: FBgn0265523, Smr, Smrter, [Score=171, Expect=3e-42]} {Smed: dd_Smed_v6_7709_0_1, dd_Smed_v6_7709_0_1, [Score=184, Expect=8e-47]} {RNA1509_6957} {RNA1310_15304.1} {RNA815_1593}
15. MligTC455_46845 1208 25.17 Mlig455_029835, Mlig455_057004

Neo: -

Age: -

Region-enriched R4: 1.286/0.01298

 0.951 - - - - 0.951 -

Mlig455_029835 {REF} {Length: 705} {TRANSSPLICED} {RNA1509_38416, RNA1509_45981} {RNA1310_50807, RNA1509_38416, RNA1509_45981} {RNA1509_38416, RNA1509_45981, RNA815_24883}

Mlig455_057004 {REF} {Length: 703} {TRANSSPLICED} {RNA1509_42735} {RNA1310_50807, RNA1509_42735} {RNA1509_42735, RNA815_24883}
16. MligTC455_26581 71 1.48 Mlig455_013862

Neo: -

Age: -

 ALKBH3 0.95 - - - - 0.950 - Mlig455_013862 {REF} {Length: 4239} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=158.2]; 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=89.5]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=117, Expect=2e-28]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=115, Expect=6e-28]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=51.2, Expect=5e-06]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=105, Expect=2e-24]} {RNA1509_29984} {RNA1310_8204} {RNA815_38513}
17. MligTC455_26582 58 1.2 Mlig455_057744

Neo: -

Age: -

 WSCD2 0.95 - - - - 0.950 - Mlig455_057744 {REF} {Length: 1270} {Pfam: WSC domain [PF01822.21, score=113.5]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=57.4, Expect=2e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=55.5, Expect=6e-08]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=47.8, Expect=1e-05]} {RNA1509_31401} {RNA1310_3059.1} {RNA815_7477.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA