M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33420

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33420 265 5.52 Mlig455_049076

Neo: -

Age: -

 ABCC1 Mlig455_049076 {REF} {Length: 6156} {Pfam: ABC transporter transmembrane region [PF00664.25, score=231.1]; ABC transporter [PF00005.29, score=170.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=39.7]; AAA ATPase domain [PF13191.8, score=24.5]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]; Dynamin family [PF00350.25, score=20.9]} {Human: ENSG00000278183, ABCC1, ATP binding cassette subfamily C member 1, [Score=1173, Expect=0.0]; ENSG00000103222, ABCC1, ATP binding cassette subfamily C member 1, [Score=1173, Expect=0.0]; ENSG00000108846, ABCC3, ATP binding cassette subfamily C member 3, [Score=1159, Expect=0.0]} {Mouse: ENSMUSG00000023088, Abcc1, ATP-binding cassette, sub-family C (CFTR/MRP), member 1, [Score=1218, Expect=0.0]; ENSMUSG00000020865, Abcc3, ATP-binding cassette, sub-family C (CFTR/MRP), member 3, [Score=1179, Expect=0.0]} {Dmel: FBgn0032456, MRP, Multidrug-Resistance like Protein 1, [Score=1131, Expect=0.0]} {Celegans: WBGene00003408, mrp-2, Multidrug resistance related protein 2, [Score=1018, Expect=0.0]} {Smed: dd_Smed_v6_9208_0_1, dd_Smed_v6_9208_0_1, [RH, Score=1146, Expect=0.0]} {RNA1509_18907, RNA1509_9357} {RNA1310_359.1, RNA1509_18907, RNA1509_9357} {RNA1509_18907, RNA1509_9357, RNA815_6169}

Cumulative graph for MligTC455_33420

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.42 2.893 0.22669 0.87113
RegionR2 0.159 2.893 0.79550 1.00000
RegionR3 0.53 2.893 0.57135 1.00000
RegionR4 1.257 2.893 0.20998 0.49434
RegionR5 0.383 2.893 0.66368 1.00000
RegionR6 0.267 2.893 0.73562 1.00000
RegionR7 0.706 2.893 0.50427 1.00000
RegionR8 2.118 2.893 0.01987 0.27341

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.381 2.893 0.99995 1.00000
RegenerationR2 0.546 2.893 0.39720 0.81322
RegenerationR3 -0.35 2.893 0.62811 0.91942
RegenerationR4 -0.11 2.893 0.88277 1.00000
RegenerationR5 0.249 2.893 0.70939 0.95538
RegenerationR6 -0.507 2.893 0.52397 0.82314
RegenerationBL -0.982 2.893 0.30751 0.67208
RegenerationTP -0.635 2.893 0.44854 0.86608


Genes with expression patterns similar to MligTC455_33420

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33420 265 5.52 Mlig455_049076

Neo: -

Age: -

 ABCC1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_049076 {REF} {Length: 6156} {Pfam: ABC transporter transmembrane region [PF00664.25, score=231.1]; ABC transporter [PF00005.29, score=170.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=39.7]; AAA ATPase domain [PF13191.8, score=24.5]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]; Dynamin family [PF00350.25, score=20.9]} {Human: ENSG00000278183, ABCC1, ATP binding cassette subfamily C member 1, [Score=1173, Expect=0.0]; ENSG00000103222, ABCC1, ATP binding cassette subfamily C member 1, [Score=1173, Expect=0.0]; ENSG00000108846, ABCC3, ATP binding cassette subfamily C member 3, [Score=1159, Expect=0.0]} {Mouse: ENSMUSG00000023088, Abcc1, ATP-binding cassette, sub-family C (CFTR/MRP), member 1, [Score=1218, Expect=0.0]; ENSMUSG00000020865, Abcc3, ATP-binding cassette, sub-family C (CFTR/MRP), member 3, [Score=1179, Expect=0.0]} {Dmel: FBgn0032456, MRP, Multidrug-Resistance like Protein 1, [Score=1131, Expect=0.0]} {Celegans: WBGene00003408, mrp-2, Multidrug resistance related protein 2, [Score=1018, Expect=0.0]} {Smed: dd_Smed_v6_9208_0_1, dd_Smed_v6_9208_0_1, [RH, Score=1146, Expect=0.0]} {RNA1509_18907, RNA1509_9357} {RNA1310_359.1, RNA1509_18907, RNA1509_9357} {RNA1509_18907, RNA1509_9357, RNA815_6169}
2. MligTC455_37537 203 4.23 Mlig455_047747

Neo: -

Age: -

Region-enriched R8: 3.525/0.01192

 KCNC2 1.665 0.955 - - - - 0.710 Mlig455_047747 {REF} {Length: 3532} {Pfam: Ion transport protein [PF00520.33, score=105.8]; BTB/POZ domain [PF02214.24, score=56.8]; Ion channel [PF07885.18, score=52.6]} {Human: ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=216, Expect=4e-60]; ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=215, Expect=5e-60]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=207, Expect=1e-56]} {Mouse: ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=218, Expect=1e-60]; ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=214, Expect=6e-60]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=230, Expect=1e-65]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=211, Expect=5e-59]} {Smed: dd_Smed_v6_9740_0_2, dd_Smed_v6_9740_0_2, [Score=208, Expect=6e-58]} {RNA1509_26535} {RNA1310_14101} {RNA815_34993}
3. MligTC455_38827 168 3.49 Mlig455_065185

Neo: -

Age: -

Region-enriched R8: 3.346/0.01415

 RDX 0.974 0.974 - - - - - Mlig455_065185 {REF} {Length: 3409} {Pfam: Ezrin/radixin/moesin family [PF00769.21, score=106.5]; FERM C-terminal PH-like domain [PF09380.12, score=87.8]; FERM central domain [PF00373.20, score=83.0]; FERM N-terminal domain [PF09379.12, score=66.5]} {Human: ENSG00000137710, RDX, radixin, [RH, Score=589, Expect=0.0]; ENSG00000092820, EZR, ezrin, [RH, Score=577, Expect=0.0]; ENSG00000147065, MSN, moesin, [RH, Score=561, Expect=0.0]} {Mouse: ENSMUSG00000032050, Rdx, radixin, [RH, Score=586, Expect=0.0]; ENSMUSG00000031207, Msn, moesin, [RH, Score=557, Expect=0.0]} {Dmel: FBgn0011661, Moe, Moesin, [RH, Score=514, Expect=5e-174]} {Celegans: WBGene00001333, erm-1, ERM-1B; Ezrin/Radixin/Moesin, [Score=545, Expect=0.0]} {Smed: dd_Smed_v6_8101_0_1, dd_Smed_v6_8101_0_1, [Score=504, Expect=7e-172]} {RNA1509_50666} {RNA1310_19690} {RNA815_6880}
4. MligTC455_19211 107 2.23 Mlig455_052588

Neo: -

Age: -

Region-enriched R8: 3.795/0.01587

 0.971 0.971 - - - - - Mlig455_052588 {REF} {Length: 2340} {Celegans: WBGene00019180, H10D18.5, [RH, Score=62.4, Expect=6e-11]} {Smed: dd_Smed_v6_10251_0_1, dd_Smed_v6_10251_0_1, [RH, Score=95.9, Expect=2e-23]} {RNA1509_8096} {RNA1310_25906} {RNA815_14581.1}
5. MligTC455_23309 257 5.35 Mlig455_013628

Neo: -

Age: Up-Down-Up

 0.97 0.970 - - - - - Mlig455_013628 {REF} {Length: 1039} {RNA1509_48616} {RNA1310_6959, RNA1509_48616} {RNA1509_48616, RNA815_10949}
6. MligTC455_32065 360 7.5 Mlig455_047186

Neo: -

Age: Up-Down-Down

 SLC17A9 0.968 - - 0.968 - - - Mlig455_047186 {REF} {Length: 3386} {Pfam: Major Facilitator Superfamily [PF07690.18, score=149.1]} {Human: ENSG00000101194, SLC17A9, solute carrier family 17 member 9, [RH, Score=303, Expect=1e-97]} {Mouse: ENSMUSG00000023393, Slc17a9, solute carrier family 17, member 9, [RH, Score=301, Expect=4e-97]} {Dmel: FBgn0025684, MFS18, Major Facilitator Superfamily Transporter 18, [Score=300, Expect=1e-96]} {Celegans: WBGene00010758, vnut-1, Vesicular NUcleotide Transporte, [RH, Score=313, Expect=5e-102]} {Smed: dd_Smed_v6_1326_0_1, dd_Smed_v6_1326_0_1, [Score=394, Expect=3e-133]} {RNA1509_17119} {RNA1310_13718} {RNA815_7003}
7. MligTC455_19176 183 3.82 Mlig455_060775

Neo: -

Age: Up-Down-Down

 ARHGEF17 0.965 0.965 - - - - - Mlig455_060775 {REF} {Length: 7482} {Pfam: RhoGEF domain [PF00621.22, score=140.8]; WD40 repeated domain [PF19056.2, score=130.9]} {Human: ENSG00000110237, ARHGEF17, Rho guanine nucleotide exchange factor 17, [RH, Score=297, Expect=2e-80]} {Mouse: ENSMUSG00000032875, Arhgef17, Rho guanine nucleotide exchange factor (GEF) 17, [RH, Score=293, Expect=1e-79]} {Dmel: FBgn0262562, CG43102, [Score=286, Expect=2e-77]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [RH, Score=247, Expect=2e-66]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=393, Expect=3e-112]} {RNA1509_22924, RNA1509_31174} {RNA1310_12203, RNA1509_22924} {RNA1509_22924, RNA815_9179}
8. MligTC455_37250 95 1.97 Mlig455_057274

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.378

 ELK1 0.965 - - - - - 0.965 Mlig455_057274 {REF} {Length: 3932} {Pfam: Ets-domain [PF00178.24, score=110.7]; Cysteine-rich secretory protein family [PF00188.28, score=76.7]} {Human: ENSG00000126767, ELK1, ELK1, ETS transcription factor, [RH, Score=138, Expect=1e-34]} {Mouse: ENSMUSG00000009406, Elk1, ELK1, member of ETS oncogene family, [RH, Score=139, Expect=7e-35]} {Dmel: FBgn0005658, Ets65A, Ets at 65A, [Score=103, Expect=2e-24]} {Celegans: WBGene00002990, lin-1, LIN-1, [RH, Score=125, Expect=1e-30]} {Smed: dd_Smed_v6_8018_0_1, dd_Smed_v6_8018_0_1, [RH, Score=156, Expect=2e-40]} {RNA1509_25660} {RNA1310_26919} {RNA815_9547.1}
9. MligTC455_42157 340 7.09 Mlig455_025121

Neo: -

Age: -

 0.965 0.965 - - - - - Mlig455_025121 {REF} {Length: 5069} {Smed: dd_Smed_v6_4268_0_1, dd_Smed_v6_4268_0_1, [RH, Score=76.6, Expect=7e-16]} {RNA1509_57041, RNA1509_57438} {RNA1310_30507, RNA1509_57041} {RNA1509_57041, RNA815_19089}
10. MligTC455_13144 399 8.32 Mlig455_066089

Neo: -

Age: logFC(26M/2M)=-0.436

 FGD4 0.964 0.964 - - - - - Mlig455_066089 {REF} {Length: 2986} {Pfam: RhoGEF domain [PF00621.22, score=94.5]; FYVE zinc finger [PF01363.23, score=36.0]} {Human: ENSG00000139132, FGD4, FYVE, RhoGEF and PH domain containing 4, [Score=97.1, Expect=4e-20]; ENSG00000146192, FGD2, FYVE, RhoGEF and PH domain containing 2, [Score=92.8, Expect=6e-19]} {Mouse: ENSMUSG00000022788, Fgd4, FYVE, RhoGEF and PH domain containing 4, [Score=102, Expect=5e-22]} {Dmel: FBgn0085447, sif, still life, [Score=57.4, Expect=5e-08]} {Celegans: WBGene00006431, tag-52, Putative protein tag-52, [Score=54.7, Expect=2e-07]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=52.4, Expect=1e-06]} {RNA1509_19578, RNA1509_57919} {RNA1310_3630, RNA1509_19578, RNA1509_57919} {RNA1509_19578, RNA1509_57919, RNA815_7148}
11. MligTC455_21579 61 1.28 Mlig455_043460

Neo: -

Age: -

 0.964 0.964 - - - - - Mlig455_043460 {REF} {Length: 2967} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=46.8]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=80.5, Expect=2e-18]} {RNA1310_30353} {RNA815_17896}
12. MligTC455_33356 149 3.11 Mlig455_025778

Neo: -

Age: -

 SP4 0.964 0.964 - - - - - Mlig455_025778 {REF} {Length: 2800} {Pfam: Zinc-finger double domain [PF13465.8, score=45.8]; Zinc finger, C2H2 type [PF00096.28, score=44.8]; C2H2-type zinc finger [PF13894.8, score=29.7]} {Human: ENSG00000105866, SP4, Sp4 transcription factor, [RH, Score=186, Expect=2e-52]; ENSG00000185591, SP1, Sp1 transcription factor, [RH, Score=180, Expect=5e-50]} {Mouse: ENSMUSG00000025323, Sp4, trans-acting transcription factor 4, [RH, Score=190, Expect=6e-54]} {Dmel: FBgn0039169, Spps, Sp1-like factor for pairing sensitive-silencing, [RH, Score=174, Expect=4e-48]} {Celegans: WBGene00012735, sptf-3, SP (Specificity Protein) Transcription Factor, [RH, Score=155, Expect=1e-43]} {Smed: dd_Smed_v6_7824_0_1, dd_Smed_v6_7824_0_1, [RH, Score=171, Expect=1e-49]} {RNA1509_53494} {RNA1310_27619} {RNA815_23917}
13. MligTC455_14268 441 9.19 Mlig455_055856

Neo: -

Age: logFC(26M/2M)=0.305

Region-enriched R5: 1.111/0.03055

 FXN 0.963 - - - - 0.963 - Mlig455_055856 {REF} {Length: 835} {TRANSSPLICED} {Pfam: Frataxin-like domain [PF01491.18, score=130.6]} {Human: ENSG00000165060, FXN, frataxin, [RH, Score=115, Expect=1e-31]} {Mouse: ENSMUSG00000059363, Fxn, frataxin, [RH, Score=114, Expect=3e-31]} {Dmel: FBgn0030092, fh, frataxin, [RH, Score=108, Expect=1e-29]} {Celegans: WBGene00001486, frh-1, Frataxin, mitochondrial, [RH, Score=107, Expect=7e-30]} {Smed: dd_Smed_v6_10952_0_1, dd_Smed_v6_10952_0_1, [RH, Score=101, Expect=3e-27]} {RNA1509_39485} {RNA1310_34480.1} {RNA815_16743}
14. MligTC455_38826 244 5.08 Mlig455_059316

Neo: -

Age: Up-Down-Up

Region-enriched R8: 3.511/0.00478

 RDX 0.963 0.963 - - - - - Mlig455_059316 {REF} {Length: 3395} {Pfam: Ezrin/radixin/moesin family [PF00769.21, score=106.5]; FERM C-terminal PH-like domain [PF09380.12, score=87.8]; FERM central domain [PF00373.20, score=83.0]; FERM N-terminal domain [PF09379.12, score=66.5]} {Human: ENSG00000137710, RDX, radixin, [RH, Score=589, Expect=0.0]; ENSG00000092820, EZR, ezrin, [RH, Score=577, Expect=0.0]; ENSG00000147065, MSN, moesin, [RH, Score=561, Expect=0.0]} {Mouse: ENSMUSG00000032050, Rdx, radixin, [RH, Score=586, Expect=0.0]; ENSMUSG00000031207, Msn, moesin, [RH, Score=557, Expect=0.0]} {Dmel: FBgn0011661, Moe, Moesin, [RH, Score=514, Expect=5e-174]} {Celegans: WBGene00001333, erm-1, ERM-1B; Ezrin/Radixin/Moesin, [Score=545, Expect=0.0]} {Smed: dd_Smed_v6_8101_0_1, dd_Smed_v6_8101_0_1, [Score=504, Expect=7e-172]} {RNA1509_50666} {RNA1310_19690} {RNA815_6880}
15. MligTC455_49026 215 4.48 Mlig455_037206

Neo: -

Age: Down-Up-Down

 HSPG2 0.963 0.963 - - - - - Mlig455_037206 {REF} {Length: 4399} {Pfam: Immunoglobulin domain [PF13927.8, score=184.9]; Immunoglobulin domain [PF13895.8, score=134.5]; Immunoglobulin I-set domain [PF07679.18, score=112.6]; Immunoglobulin domain [PF00047.27, score=95.1]; Immunoglobulin V-set domain [PF07686.19, score=61.1]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=42.0]; Fibronectin type III domain [PF00041.23, score=37.5]; Immunoglobulin domain [PF18452.3, score=35.0]; C17orf99 Ig domain [PF17736.3, score=23.3]} {Human: ENSG00000142798, HSPG2, heparan sulfate proteoglycan 2, [Score=117, Expect=8e-26]} {Mouse: ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=132, Expect=2e-30]} {Dmel: FBgn0000547, ed, echinoid, [Score=217, Expect=3e-57]} {Celegans: WBGene00018215, igcm-1, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=138, Expect=6e-33]} {Smed: dd_Smed_v6_13903_0_1, dd_Smed_v6_13903_0_1, [Score=162, Expect=2e-40]} {RNA1509_31910} {RNA1310_43699} {RNA815_44505}
16. MligTC455_13091 105 2.18 Mlig455_005443

Neo: -

Age: -

 0.962 0.962 - - - - - Mlig455_005443 {REF} {Length: 2879} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=31.3]} {RNA1509_41201} {RNA1310_51571} {RNA815_38501}
17. MligTC455_49094 59 1.22 Mlig455_065396

Neo: -

Age: -

 RERGL 0.961 0.961 - - - - - Mlig455_065396 {REF} {Length: 1449} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=61.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=25.4]} {Human: ENSG00000111404, RERGL, RERG like, [Score=80.5, Expect=7e-18]; ENSG00000134533, RERG, RAS like estrogen regulated growth inhibitor, [Score=80.1, Expect=7e-18]} {Mouse: ENSMUSG00000092164, Rergl, RERG/RAS-like, [Score=84.7, Expect=1e-19]} {Dmel: FBgn0035711, CG8519, [Score=69.3, Expect=4e-14]} {Celegans: WBGene00004309, rap-3, RAP homolog (Vertebrate Rap GTPase family), [Score=59.3, Expect=1e-10]} {Smed: dd_Smed_v6_7273_0_1, dd_Smed_v6_7273_0_1, [Score=80.1, Expect=3e-18]} {RNA1509_41924} {RNA1310_34154} {RNA815_43516}
18. MligTC455_24861 117 2.44 Mlig455_019572

Neo: -

Age: -

Region-enriched R8: 4.245/0.00630

 FREM1 0.96 0.960 - - - - - Mlig455_019572 {REF} {Length: 8695} {Pfam: Cadherin-like [PF16184.7, score=328.8]; Frem protein N-terminal domain [PF19309.1, score=92.3]; Lectin C-type domain [PF00059.23, score=31.6]} {Human: ENSG00000164946, FREM1, FRAS1 related extracellular matrix 1, [RH, Score=370, Expect=2e-102]} {Mouse: ENSMUSG00000059049, Frem1, Fras1 related extracellular matrix protein 1, [RH, Score=381, Expect=3e-106]} {Smed: dd_Smed_v6_5187_0_1, dd_Smed_v6_5187_0_1, [RH, Score=508, Expect=4e-147]} {RNA1509_8234} {RNA1310_595.1} {RNA815_322}
19. MligTC455_50932 684 14.25 Mlig455_002743

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_002743 {REF} {Length: 3757} {TRANSSPLICED} {RNA1509_51425} {RNA1310_2886.1, RNA1509_51425} {RNA1509_51425, RNA815_8254}
20. MligTC455_29677 97 2.02 Mlig455_019943

Neo: -

Age: -

 0.957 0.957 - - - - - Mlig455_019943 {REF} {Length: 2131} {RNA1509_26281} {RNA1310_4721} {RNA815_2426.1}
21. MligTC455_25683 493 10.27 Mlig455_005021

Neo: -

Age: -

 MED21 0.956 - - - - 0.956 - Mlig455_005021 {REF} {Length: 927} {TRANSSPLICED} {Pfam: Subunit 21 of Mediator complex [PF11221.10, score=76.5]} {Human: ENSG00000152944, MED21, mediator complex subunit 21, [RH, Score=94.4, Expect=7e-25]} {Mouse: ENSMUSG00000030291, Med21, mediator complex subunit 21, [RH, Score=95.1, Expect=2e-25]} {Dmel: FBgn0040020, MED21, Mediator complex subunit 21, [RH, Score=89.4, Expect=3e-23]} {Celegans: WBGene00007704, mdt-21, Mediator of RNA polymerase II transcription subunit 21, [RH, Score=48.5, Expect=8e-08]} {RNA1509_27093, RNA1509_40281} {RNA1310_34223, RNA1509_27093, RNA1509_40281} {RNA1509_27093, RNA1509_40281, RNA815_18272}
22. MligTC455_38303 142 2.96 Mlig455_021803

Neo: -

Age: Up-Down-Down

 PCLO 0.955 0.955 - - - - - Mlig455_021803 {REF} {Length: 6090} {Pfam: C2 domain [PF00168.32, score=66.7]; FYVE-type zinc finger [PF02318.18, score=55.2]; Piccolo Zn-finger [PF05715.15, score=27.5]} {Human: ENSG00000186472, PCLO, piccolo presynaptic cytomatrix protein, [RH, Score=122, Expect=6e-27]} {Mouse: ENSMUSG00000061601, Pclo, piccolo (presynaptic cytomatrix protein), [RH, Score=119, Expect=2e-26]} {Dmel: FBgn0053547, Rim, Rab3 interacting molecule, [Score=83.2, Expect=1e-15]} {Celegans: WBGene00004033, pkc-2, Protein kinase C-like 2, [Score=79.0, Expect=1e-14]} {Smed: dd_Smed_v6_9615_0_1, dd_Smed_v6_9615_0_1, [RH, Score=185, Expect=4e-47]} {RNA1509_42665} {RNA1310_6999} {RNA815_17846}
23. MligTC455_38880 31 0.65 Mlig455_057464

Neo: -

Age: -

 GRIA2 0.955 0.955 - - - - - Mlig455_057464 {REF} {Length: 3626} {Pfam: Ligand-gated ion channel [PF00060.28, score=91.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=53.4]; Receptor family ligand binding region [PF01094.30, score=40.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.7]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=157, Expect=4e-39]; ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=151, Expect=5e-37]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=150, Expect=9e-37]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=157, Expect=3e-39]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=150, Expect=8e-37]} {Dmel: FBgn0038837, CG3822, [Score=149, Expect=7e-37]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=132, Expect=3e-31]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=270, Expect=1e-82]} {RNA1310_21369} {RNA815_25524}
24. MligTC455_31764 62 1.28 Mlig455_006258

Neo: -

Age: Down-Down-Up

Region-enriched R8: 4.078/0.01607

 LMNA 0.954 0.954 - - - - - Mlig455_006258 {REF} {Length: 2636} {Pfam: Intermediate filament protein [PF00038.23, score=111.4]} {Human: ENSG00000160789, LMNA, lamin A/C, [Score=87.8, Expect=7e-18]; ENSG00000026025, VIM, vimentin, [Score=84.7, Expect=4e-17]} {Mouse: ENSMUSG00000028063, Lmna, lamin A, [Score=86.3, Expect=2e-17]; ENSMUSG00000026728, Vim, vimentin, [Score=85.5, Expect=2e-17]; ENSMUSG00000095241, Gm5478, predicted pseudogene 5478, [Score=82.8, Expect=2e-16]} {Dmel: FBgn0010397, LamC, Lamin C, [Score=93.6, Expect=5e-20]} {Celegans: WBGene00002050, ifa-1, Intermediate filament protein ifa-1, [Score=165, Expect=1e-44]} {Smed: dd_Smed_v6_3871_0_1, dd_Smed_v6_3871_0_1, [Score=190, Expect=6e-54]} {RNA1509_56508} {RNA1310_5840} {RNA815_9167}
25. MligTC455_12451 63 1.31 Mlig455_008444

Neo: -

Age: -

Region-enriched R8: 4.645/0.00722
Region-enriched R7: 3.937/0.01020

 0.953 0.953 - - - - - Mlig455_008444 {REF} {Length: 791}
26. MligTC455_25684 191 3.99 Mlig455_005063

Neo: -

Age: Down-Down-Up

 MED21 0.953 - - - - 0.953 - Mlig455_005063 {REF} {Length: 919} {TRANSSPLICED} {Pfam: Subunit 21 of Mediator complex [PF11221.10, score=76.3]} {Human: ENSG00000152944, MED21, mediator complex subunit 21, [RH, Score=90.9, Expect=2e-23]} {Mouse: ENSMUSG00000030291, Med21, mediator complex subunit 21, [RH, Score=91.3, Expect=6e-24]} {Dmel: FBgn0040020, MED21, Mediator complex subunit 21, [RH, Score=85.9, Expect=5e-22]} {Celegans: WBGene00007704, mdt-21, Mediator of RNA polymerase II transcription subunit 21, [RH, Score=49.7, Expect=3e-08]} {RNA1509_27093} {RNA1310_34223} {RNA815_18272}
27. MligTC455_28752 111 2.31 Mlig455_024556, Mlig455_024588, Mlig455_062242

Neo: -

Age: -

Region-enriched R8: 3.725/0.03239

 0.953 0.953 - - - - -

Mlig455_024556 {REF} {Length: 953} {RNA1509_27801} {RNA1310_32897} {RNA815_15953.1}

Mlig455_024588 {REF} {Length: 365} {RNA1310_65985} {RNA815_44318}

Mlig455_062242 {REF} {Length: 2999} {Pfam: Salt tolerance down-regulator [PF13945.8, score=20.0]} {RNA1509_54152} {RNA1310_6101.1} {RNA815_15953.1}
28. MligTC455_11888 142 2.96 Mlig455_065110

Neo: -

Age: -

 PCDH11X 0.951 0.951 - - - - - Mlig455_065110 {REF} {Length: 4103} {Pfam: Cadherin domain [PF00028.19, score=207.8]; Cadherin-like [PF16184.7, score=34.7]; Cadherin-like [PF08266.14, score=23.4]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=273, Expect=3e-74]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=271, Expect=1e-73]} {Mouse: ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=278, Expect=6e-76]} {Dmel: FBgn0261574, kug, kugelei, [Score=177, Expect=4e-44]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=144, Expect=2e-34]} {Smed: dd_Smed_v6_12023_0_1, dd_Smed_v6_12023_0_1, [Score=322, Expect=1e-92]} {RNA1509_38191} {RNA1310_74429} {RNA815_12734}
29. MligTC455_27571 65 1.36 Mlig455_035134

Neo: -

Age: logFC(26M/2M)=-0.443

Region-enriched R7: 3.058/0.04041

Regeneration-downregulated TP: -8.493

Regeneration-depleted TP: -8.493

 ANK1 0.95 0.950 - - - - - Mlig455_035134 {REF} {Length: 4051} {Pfam: Ankyrin repeat [PF00023.32, score=192.6]; Ankyrin repeats (3 copies) [PF12796.9, score=186.4]; Ankyrin repeat [PF13606.8, score=143.1]; Ankyrin repeats (many copies) [PF13637.8, score=131.9]; Ankyrin repeats (many copies) [PF13857.8, score=129.4]; Mab-21 protein [PF03281.16, score=28.2]; Glutamine amidotransferase domain [PF13537.8, score=28.0]; PEGA domain [PF08308.13, score=20.0]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=183, Expect=3e-46]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=179, Expect=2e-45]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=173, Expect=2e-43]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=172, Expect=3e-43]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=179, Expect=1e-45]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
30. MligTC455_49188 2341 48.77 Mlig455_002269, Mlig455_002314

Neo: -

Age: -

Region-enriched R6: 6.536/0.00415

 0.95 0.950 - - - - -

Mlig455_002269 {REF} {Length: 959} {RNA1509_43329} {RNA1310_49486} {RNA815_5449}

Mlig455_002314 {REF} {Length: 1882} {RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1310_49486, RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1509_18874, RNA1509_2814, RNA1509_43329, RNA815_5449}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA