M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33634

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33634 440 9.16 Mlig455_053345

Neo: -

Age: -

 RALGAPB Mlig455_053345 {REF} {Length: 7224} {TRANSSPLICED} {Human: ENSG00000170471, RALGAPB, Ral GTPase activating protein non-catalytic beta subunit, [RH, Score=248, Expect=2e-66]} {Mouse: ENSMUSG00000027652, Ralgapb, Ral GTPase activating protein, beta subunit (non-catalytic), [RH, Score=249, Expect=9e-67]} {Dmel: FBgn0085437, CG34408, [RH, Score=259, Expect=1e-70]} {Celegans: WBGene00008430, hgap-2, Heterodimeric GTPase Activating Protein subunit, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_8678_0_2, dd_Smed_v6_8678_0_2, [RH, Score=249, Expect=3e-67]} {RNA1509_58977} {RNA1310_7211.1, RNA1509_58977} {RNA1509_58977, RNA815_712.1}

Cumulative graph for MligTC455_33634

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.607 3.665 0.07172 0.59655
RegionR2 1.655 3.665 0.02866 0.19109
RegionR3 0.857 3.665 0.28473 0.82720
RegionR4 1.062 3.665 0.19200 0.46809
RegionR5 1.086 3.665 0.11428 0.33443
RegionR6 0.613 3.665 0.48230 1.00000
RegionR7 1.521 3.665 0.05371 0.44589
RegionR8 -0.187 3.665 0.90628 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.424 3.665 0.99994 1.00000
RegenerationR2 -0.086 3.665 0.83498 0.99929
RegenerationR3 0.4 3.665 0.39470 0.79916
RegenerationR4 -0.161 3.665 0.73184 0.96484
RegenerationR5 0.489 3.665 0.23372 0.66739
RegenerationR6 0.755 3.665 0.11699 0.42070
RegenerationBL 0.851 3.665 0.17384 0.49967
RegenerationTP 0.425 3.665 0.54767 0.93135


Genes with expression patterns similar to MligTC455_33634

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33634 440 9.16 Mlig455_053345

Neo: -

Age: -

 RALGAPB 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053345 {REF} {Length: 7224} {TRANSSPLICED} {Human: ENSG00000170471, RALGAPB, Ral GTPase activating protein non-catalytic beta subunit, [RH, Score=248, Expect=2e-66]} {Mouse: ENSMUSG00000027652, Ralgapb, Ral GTPase activating protein, beta subunit (non-catalytic), [RH, Score=249, Expect=9e-67]} {Dmel: FBgn0085437, CG34408, [RH, Score=259, Expect=1e-70]} {Celegans: WBGene00008430, hgap-2, Heterodimeric GTPase Activating Protein subunit, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_8678_0_2, dd_Smed_v6_8678_0_2, [RH, Score=249, Expect=3e-67]} {RNA1509_58977} {RNA1310_7211.1, RNA1509_58977} {RNA1509_58977, RNA815_712.1}
2. MligTC455_33635 324 6.75 Mlig455_053682

Neo: -

Age: Up-Down-Up

 RALGAPB 5.436 0.906 0.938 0.725 0.969 0.919 0.979 Mlig455_053682 {REF} {Length: 7650} {Human: ENSG00000170471, RALGAPB, Ral GTPase activating protein non-catalytic beta subunit, [RH, Score=248, Expect=2e-66]} {Mouse: ENSMUSG00000027652, Ralgapb, Ral GTPase activating protein, beta subunit (non-catalytic), [RH, Score=249, Expect=1e-66]} {Dmel: FBgn0085437, CG34408, [RH, Score=258, Expect=3e-70]} {Celegans: WBGene00008430, hgap-2, Heterodimeric GTPase Activating Protein subunit, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_8678_0_1, dd_Smed_v6_8678_0_1, [RH, Score=249, Expect=7e-67]} {RNA1509_58977} {RNA1310_7211.1} {RNA815_712.1}
3. MligTC455_33557 851 17.72 Mlig455_011611, Mlig455_049980

Neo: -

Age: -

 DYM 0.964 - - - - - 0.964

Mlig455_011611 {REF} {Length: 4670} {TRANSSPLICED} {Pfam: Dyggve-Melchior-Clausen syndrome protein [PF09742.11, score=419.0]; High-temperature-induced dauer-formation protein [PF12722.9, score=38.4]} {Human: ENSG00000141627, DYM, dymeclin, [RH, Score=355, Expect=4e-113]} {Mouse: ENSMUSG00000035765, Dym, dymeclin, [RH, Score=373, Expect=5e-120]} {Dmel: FBgn0027607, CG8230, [RH, Score=346, Expect=9e-110]} {Celegans: WBGene00008136, C47D12.2, [RH, Score=283, Expect=9e-86]} {Smed: dd_Smed_v6_7629_0_1, dd_Smed_v6_7629_0_1, [RH, Score=247, Expect=6e-73]} {RNA1509_22008, RNA1509_31490} {RNA1310_10135.2, RNA1509_22008, RNA1509_31490} {RNA1509_22008, RNA1509_31490, RNA815_7307}

Mlig455_049980 {REF} {Length: 6297} {TRANSSPLICED} {Pfam: Dyggve-Melchior-Clausen syndrome protein [PF09742.11, score=418.0]; High-temperature-induced dauer-formation protein [PF12722.9, score=38.6]} {Human: ENSG00000141627, DYM, dymeclin, [RH, Score=355, Expect=4e-113]} {Mouse: ENSMUSG00000035765, Dym, dymeclin, [RH, Score=374, Expect=1e-120]} {Dmel: FBgn0027607, CG8230, [RH, Score=345, Expect=2e-109]} {Celegans: WBGene00008136, C47D12.2, [RH, Score=283, Expect=1e-85]} {Smed: dd_Smed_v6_7629_0_1, dd_Smed_v6_7629_0_1, [RH, Score=249, Expect=1e-73]} {RNA1509_31490} {RNA1310_10135.1} {RNA815_7307}
4. MligTC455_33905 1547 32.23 Mlig455_036181

Neo: -

Age: logFC(26M/2M)=0.200

 YKT6 0.957 - - - - - 0.957 Mlig455_036181 {REF} {Length: 1926} {TRANSSPLICED} {Pfam: Synaptobrevin [PF00957.23, score=54.6]; Regulated-SNARE-like domain [PF13774.8, score=45.8]} {Human: ENSG00000106636, YKT6, YKT6 v-SNARE homolog, [RH, Score=216, Expect=1e-71]} {Mouse: ENSMUSG00000002741, Ykt6, YKT6 v-SNARE homolog (S. cerevisiae), [RH, Score=215, Expect=4e-71]} {Dmel: FBgn0260858, Ykt6, YKT6 v-SNARE, [RH, Score=208, Expect=1e-68]} {Celegans: WBGene00015164, ykt-6, YKT6 (Yeast v-SNARE) homolog, [RH, Score=191, Expect=5e-62]} {Smed: dd_Smed_v6_8028_0_1, dd_Smed_v6_8028_0_1, [RH, Score=244, Expect=6e-83]} {RNA1509_30253, RNA1509_50545, RNA1509_6762} {RNA1310_14659, RNA1509_30253, RNA1509_50545, RNA1509_6762} {RNA1509_30253, RNA1509_50545, RNA1509_6762, RNA815_4604.1}
5. MligTC455_04366 654 13.63 Mlig455_052829

Neo: -

Age: -

 UPF2 0.955 - - - - - 0.955 Mlig455_052829 {REF} {Length: 4197} {TRANSSPLICED} {Pfam: MIF4G domain [PF02854.21, score=172.7]; Up-frameshift suppressor 2 [PF04050.16, score=29.1]} {Human: ENSG00000151461, UPF2, UPF2, regulator of nonsense mediated mRNA decay, [Score=651, Expect=0.0]} {Mouse: ENSMUSG00000043241, Upf2, UPF2 regulator of nonsense transcripts homolog (yeast), [Score=659, Expect=0.0]} {Dmel: FBgn0029992, Upf2, [Score=569, Expect=0.0]} {Celegans: WBGene00004881, smg-3, SMG-3; Suppressor with Morphological effect on Genitalia, [RH, Score=328, Expect=5e-94]} {Smed: dd_Smed_v6_7696_0_1, dd_Smed_v6_7696_0_1, [RH, Score=541, Expect=3e-172]} {RNA1509_10414} {RNA1310_2087} {RNA815_4700.1}
6. MligTC455_19733 1211 25.23 Mlig455_011529, Mlig455_011605, Mlig455_050015

Neo: -

Age: -

 SRP14 0.954 - - - - - 0.954

Mlig455_011529 {REF} {Length: 2498} {Pfam: Signal recognition particle 14kD protein [PF02290.17, score=80.9]} {Human: ENSG00000140319, SRP14, signal recognition particle 14, [RH, Score=99.4, Expect=4e-27]} {Mouse: ENSMUSG00000009549, Srp14, signal recognition particle 14, [RH, Score=92.0, Expect=7e-25]} {Dmel: FBgn0038808, Srp14, Signal recognition particle protein 14, [RH, Score=60.8, Expect=9e-13]} {Celegans: WBGene00017799, F25G6.8, Signal recognition particle 14 kDa protein, [RH, Score=65.5, Expect=1e-14]} {Smed: dd_Smed_v6_3653_0_1, dd_Smed_v6_3653_0_1, [RH, Score=112, Expect=4e-33]} {RNA1509_12830} {RNA1310_47278.1} {RNA815_25613}

Mlig455_011605 {REF} {Length: 2466} {Pfam: Signal recognition particle 14kD protein [PF02290.17, score=80.9]} {Human: ENSG00000140319, SRP14, signal recognition particle 14, [RH, Score=99.4, Expect=4e-27]} {Mouse: ENSMUSG00000009549, Srp14, signal recognition particle 14, [RH, Score=92.0, Expect=7e-25]} {Dmel: FBgn0038808, Srp14, Signal recognition particle protein 14, [RH, Score=60.8, Expect=9e-13]} {Celegans: WBGene00017799, F25G6.8, Signal recognition particle 14 kDa protein, [RH, Score=65.5, Expect=1e-14]} {Smed: dd_Smed_v6_3653_0_1, dd_Smed_v6_3653_0_1, [RH, Score=112, Expect=4e-33]} {RNA1509_12830, RNA1509_35783, RNA1509_37152, RNA1509_44435} {RNA1310_47278.1, RNA1509_12830, RNA1509_35783, RNA1509_37152, RNA1509_44435} {RNA1509_12830, RNA1509_35783, RNA1509_37152, RNA1509_44435, RNA815_25613}

Mlig455_050015 {REF} {Length: 2672} {TRANSSPLICED} {Pfam: Signal recognition particle 14kD protein [PF02290.17, score=80.9]} {Human: ENSG00000140319, SRP14, signal recognition particle 14, [RH, Score=99.4, Expect=4e-27]} {Mouse: ENSMUSG00000009549, Srp14, signal recognition particle 14, [RH, Score=92.0, Expect=7e-25]} {Dmel: FBgn0038808, Srp14, Signal recognition particle protein 14, [RH, Score=60.8, Expect=9e-13]} {Celegans: WBGene00017799, F25G6.8, Signal recognition particle 14 kDa protein, [RH, Score=65.5, Expect=1e-14]} {Smed: dd_Smed_v6_3653_0_1, dd_Smed_v6_3653_0_1, [RH, Score=112, Expect=4e-33]} {RNA1509_12830} {RNA1310_51627} {RNA815_25613}
7. MligTC455_45446 874 18.22 Mlig455_003759, Mlig455_056127

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.732

 ZNF330 0.954 - - - - - 0.954

Mlig455_003759 {REF} {Length: 2387} {TRANSSPLICED} {Pfam: NOA36 protein [PF06524.14, score=470.1]} {Human: ENSG00000109445, ZNF330, zinc finger protein 330, [RH, Score=357, Expect=2e-123]} {Mouse: ENSMUSG00000031711, Zfp330, zinc finger protein 330, [RH, Score=358, Expect=4e-124]} {Dmel: FBgn0026400, Noa36, [RH, Score=369, Expect=3e-128]} {Smed: dd_Smed_v6_6139_0_1, dd_Smed_v6_6139_0_1, [RH, Score=366, Expect=1e-127]} {RNA1509_6034} {RNA1310_22107.1, RNA1509_6034} {RNA1509_6034, RNA815_8837}

Mlig455_056127 {REF} {Length: 2481} {TRANSSPLICED} {Pfam: NOA36 protein [PF06524.14, score=470.1]} {Human: ENSG00000109445, ZNF330, zinc finger protein 330, [RH, Score=357, Expect=2e-123]} {Mouse: ENSMUSG00000031711, Zfp330, zinc finger protein 330, [RH, Score=358, Expect=4e-124]} {Dmel: FBgn0026400, Noa36, [RH, Score=369, Expect=3e-128]} {Smed: dd_Smed_v6_6139_0_1, dd_Smed_v6_6139_0_1, [RH, Score=366, Expect=1e-127]} {RNA1509_6034} {RNA1310_22107.1} {RNA815_8837}
8. MligTC455_14347 395 8.24 Mlig455_049858

Neo: -

Age: Up-Up-Down

 0.951 - - - - - 0.951 Mlig455_049858 {REF} {Length: 1083} {NoTransDecoderORF} {RNA1509_24589} {RNA1310_17334.1} {RNA815_7422.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA