M. lignano Tomo-Seq
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Results for MligTC455_33986

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33986 49 1.02 Mlig455_039144

Neo: -

Age: -

 Mlig455_039144 {REF} {Length: 3491} {TRANSSPLICED} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=52.7]} {RNA1509_11292} {RNA1310_7966.2} {RNA815_776.1}

Cumulative graph for MligTC455_33986

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.522 1.529 0.99963 1.00000
RegionR2 1.051 1.529 0.45190 0.83960
RegionR3 2.352 1.529 0.10890 0.57489
RegionR4 2.517 1.529 0.04151 0.16981
RegionR5 1.348 1.529 0.32017 0.66188
RegionR6 1.123 1.529 0.42585 0.99167
RegionR7 -2.265 1.529 0.99953 1.00000
RegionR8 -2.604 1.529 0.99954 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.203 1.529 0.99999 1.00000
RegenerationR2 0.816 1.529 0.40811 0.81859
RegenerationR3 0.925 1.529 0.35129 0.77153
RegenerationR4 0.613 1.529 0.52429 0.88141
RegenerationR5 1.364 1.529 0.15169 0.57045
RegenerationR6 0.827 1.529 0.48993 0.79894
RegenerationBL 3.11 1.529 0.12084 0.41246
RegenerationTP 2.97 1.529 0.28280 0.73030


Genes with expression patterns similar to MligTC455_33986

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33986 49 1.02 Mlig455_039144

Neo: -

Age: -

 4 1.000 - - 1.000 1.000 1.000 Mlig455_039144 {REF} {Length: 3491} {TRANSSPLICED} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=52.7]} {RNA1509_11292} {RNA1310_7966.2} {RNA815_776.1}
2. MligTC455_20837 65 1.36 Mlig455_002198

Neo: -

Age: -

Region-enriched R4: 4.160/0.00946

 HSD17B14 1.712 0.952 - - - - 0.760 Mlig455_002198 {REF} {Length: 2128} {Pfam: short chain dehydrogenase [PF00106.27, score=155.2]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=152.4]; KR domain [PF08659.12, score=29.9]; Fungal family of unknown function (DUF1776) [PF08643.12, score=19.7]} {Human: ENSG00000087076, HSD17B14, hydroxysteroid 17-beta dehydrogenase 14, [RH, Score=165, Expect=2e-49]} {Mouse: ENSMUSG00000030825, Hsd17b14, hydroxysteroid (17-beta) dehydrogenase 14, [RH, Score=189, Expect=7e-59]} {Dmel: FBgn0037354, CG12171, [Score=104, Expect=2e-26]} {Celegans: WBGene00000976, dhs-13, DeHydrogenases, Short chain, [Score=92.0, Expect=6e-22]} {Smed: dd_Smed_v6_2290_0_1, dd_Smed_v6_2290_0_1, [RH, Score=170, Expect=8e-52]} {RNA1509_37621} {RNA1310_34277} {RNA815_18656}
3. MligTC455_15170 36 0.75 Mlig455_016666

Neo: -

Age: Up-Down-Down

 GAB1 0.97 - - - 0.970 - - Mlig455_016666 {REF} {Length: 3810} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=44.4]} {Human: ENSG00000109458, GAB1, GRB2 associated binding protein 1, [RH, Score=59.7, Expect=8e-09]; ENSG00000160219, GAB3, GRB2 associated binding protein 3, [RH, Score=59.7, Expect=7e-09]} {Mouse: ENSMUSG00000032750, Gab3, growth factor receptor bound protein 2-associated protein 3, [RH, Score=55.1, Expect=1e-07]} {Dmel: FBgn0016794, dos, daughter of sevenless, [RH, Score=56.2, Expect=5e-08]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=51.2, Expect=1e-06]} {RNA1509_7659} {RNA1310_20098} {RNA815_10250}
4. MligTC455_36814 22 0.46 Mlig455_057650

Neo: -

Age: logFC(26M/2M)=-0.758

Region-enriched R2: 7.107/0.01468

 TRPM1 0.959 - - - - 0.959 - Mlig455_057650 {REF} {Length: 5582} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=93.5]; Ankyrin repeats (many copies) [PF13637.8, score=71.4]; Ankyrin repeats (many copies) [PF13857.8, score=52.7]; Ankyrin repeat [PF13606.8, score=42.4]; Ankyrin repeat [PF00023.32, score=23.6]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=79.3, Expect=6e-14]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=79.3, Expect=5e-14]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=77.4, Expect=2e-13]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=80.9, Expect=1e-14]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=78.6, Expect=6e-14]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=67.4, Expect=1e-10]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=74.7, Expect=6e-13]} {Smed: dd_Smed_v6_13669_0_1, dd_Smed_v6_13669_0_1, [Score=84.3, Expect=4e-16]} {RNA1509_30268} {RNA1310_2381} {RNA815_861}
5. MligTC455_50474 23 0.48 Mlig455_007135

Neo: -

Age: -

 0.956 - - - 0.956 - - Mlig455_007135 {REF} {Length: 1227} {RNA1509_33263} {RNA1310_47821}
6. MligTC455_24040 77 1.6 Mlig455_033510

Neo: -

Age: -

Region-enriched R7: 5.524/0.00162

 0.955 - - - 0.955 - - Mlig455_033510 {REF} {Length: 2880} {NoTransDecoderORF} {RNA1509_50322} {RNA1310_68317} {RNA815_47997}
7. MligTC455_12681 33 0.7 Mlig455_068475

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_068475 {REF} {Length: 2564} {NoTransDecoderORF} {RNA1509_52469} {RNA1310_36221} {RNA815_18198}
8. MligTC455_51971 3 0.07 Mlig455_000319

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_000319 {REF} {Length: 1481} {NoTransDecoderORF}
9. MligTC455_27051 7 0.15 Mlig455_021869, Mlig455_021870

Neo: -

Age: Up-Down-Down

 0.951 - - - - - 0.951

Mlig455_021869 {REF} {Length: 2466} {TRANSSPLICED} {RNA1310_16868.1} {RNA815_28083}

Mlig455_021870 {REF} {Length: 3573} {TRANSSPLICED} {Pfam: EGF-like domain [PF00008.29, score=20.6]} {RNA1509_10937, RNA1509_54005} {RNA1310_1042.2, RNA1509_54005} {RNA1509_54005, RNA815_1808}

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