Data search
Results for MligTC455_34165
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_34165 | 1247 | 25.99 | Mlig455_044821 | Neo: - Age: Up-Down-Up |
MYH6 | Mlig455_044821 {REF} {Length: 8028} {Pfam: Myosin head (motor domain) [PF00063.23, score=936.2]; Myosin tail [PF01576.21, score=581.5]; Myosin N-terminal SH3-like domain [PF02736.21, score=58.5]; Protein of unknown function (DUF1664) [PF07889.14, score=41.0]; Crescentin protein [PF19220.2, score=36.6]} {Human: ENSG00000197616, MYH6, myosin heavy chain 6, [RH, Score=2093, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [RH, Score=2086, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [RH, Score=2045, Expect=0.0]; ENSG00000125414, MYH2, myosin heavy chain 2, [RH, Score=2044, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [RH, Score=2035, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [RH, Score=2033, Expect=0.0]; ENSG00000109063, MYH3, myosin heavy chain 3, [RH, Score=1994, Expect=0.0]} {Mouse: ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [RH, Score=2090, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [RH, Score=2084, Expect=0.0]; ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [RH, Score=2080, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [RH, Score=2056, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [RH, Score=2053, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [RH, Score=2043, Expect=0.0]; ENSMUSG00000020908, Myh3, myosin, heavy polypeptide 3, skeletal muscle, embryonic, [RH, Score=2001, Expect=0.0]; ENSMUSG00000060180, Myh13, myosin, heavy polypeptide 13, skeletal muscle, [RH, Score=2001, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [RH, Score=2114, Expect=0.0]} {Celegans: WBGene00019064, myo-5, MYOsin heavy chain structural genes, [RH, Score=1969, Expect=0.0]} {Smed: dd_Smed_v6_579_0_1, dd_Smed_v6_579_0_1, [RH, Score=2701, Expect=0.0]} {RNA1509_4871} {RNA1310_412.1} {RNA815_129.1} |
Cumulative graph for MligTC455_34165
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.158 | 4.913 | 0.28635 | 0.93774 | |
| RegionR2 | 0.673 | 4.913 | 0.18213 | 0.53319 | |
| RegionR3 | -0.271 | 4.913 | 0.53076 | 1.00000 | |
| RegionR4 | -0.287 | 4.913 | 0.57649 | 0.89355 | |
| RegionR5 | -0.978 | 4.913 | 0.02502 | 0.11368 | |
| RegionR6 | -0.192 | 4.913 | 0.65539 | 1.00000 | |
| RegionR7 | 0.865 | 4.913 | 0.04255 | 0.39600 | |
| RegionR8 | 1.349 | 4.913 | 0.00352 | 0.10371 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -6.631 | 4.913 | 0.14028 | 0.87691 | |
| RegenerationR2 | -0.727 | 4.913 | 0.14577 | 0.57738 | |
| RegenerationR3 | -0.189 | 4.913 | 0.72638 | 0.95655 | |
| RegenerationR4 | -0.624 | 4.913 | 0.26776 | 0.71460 | |
| RegenerationR5 | -0.089 | 4.913 | 0.86626 | 1.00000 | |
| RegenerationR6 | -0.358 | 4.913 | 0.50196 | 0.80743 | |
| RegenerationBL | -0.387 | 4.913 | 0.44753 | 0.81453 | |
| RegenerationTP | -1.274 | 4.913 | 0.02551 | 0.27029 |
Genes with expression patterns similar to MligTC455_34165
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_34165 | 1247 | 25.99 | Mlig455_044821 | Neo: - Age: Up-Down-Up |
MYH6 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_044821 {REF} {Length: 8028} {Pfam: Myosin head (motor domain) [PF00063.23, score=936.2]; Myosin tail [PF01576.21, score=581.5]; Myosin N-terminal SH3-like domain [PF02736.21, score=58.5]; Protein of unknown function (DUF1664) [PF07889.14, score=41.0]; Crescentin protein [PF19220.2, score=36.6]} {Human: ENSG00000197616, MYH6, myosin heavy chain 6, [RH, Score=2093, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [RH, Score=2086, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [RH, Score=2045, Expect=0.0]; ENSG00000125414, MYH2, myosin heavy chain 2, [RH, Score=2044, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [RH, Score=2035, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [RH, Score=2033, Expect=0.0]; ENSG00000109063, MYH3, myosin heavy chain 3, [RH, Score=1994, Expect=0.0]} {Mouse: ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [RH, Score=2090, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [RH, Score=2084, Expect=0.0]; ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [RH, Score=2080, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [RH, Score=2056, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [RH, Score=2053, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [RH, Score=2043, Expect=0.0]; ENSMUSG00000020908, Myh3, myosin, heavy polypeptide 3, skeletal muscle, embryonic, [RH, Score=2001, Expect=0.0]; ENSMUSG00000060180, Myh13, myosin, heavy polypeptide 13, skeletal muscle, [RH, Score=2001, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [RH, Score=2114, Expect=0.0]} {Celegans: WBGene00019064, myo-5, MYOsin heavy chain structural genes, [RH, Score=1969, Expect=0.0]} {Smed: dd_Smed_v6_579_0_1, dd_Smed_v6_579_0_1, [RH, Score=2701, Expect=0.0]} {RNA1509_4871} {RNA1310_412.1} {RNA815_129.1} |
| 2. | MligTC455_34166 | 2039 | 42.49 | Mlig455_044798, Mlig455_055561 | Neo: - Age: logFC(26M/2M)=1.818 Region-enriched R8: 1.448/0.03435 |
MYH6 | 5.808 | 0.956 | 0.972 | 0.965 | 0.965 | 0.972 | 0.978 | Mlig455_044798 {REF} {Length: 8009} {Pfam: Myosin head (motor domain) [PF00063.23, score=936.1]; Myosin tail [PF01576.21, score=581.5]; Myosin N-terminal SH3-like domain [PF02736.21, score=58.5]; Protein of unknown function (DUF1664) [PF07889.14, score=41.0]; Crescentin protein [PF19220.2, score=36.6]} {Human: ENSG00000197616, MYH6, myosin heavy chain 6, [RH, Score=2093, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [RH, Score=2086, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [RH, Score=2044, Expect=0.0]; ENSG00000125414, MYH2, myosin heavy chain 2, [RH, Score=2044, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [RH, Score=2035, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [RH, Score=2033, Expect=0.0]; ENSG00000109063, MYH3, myosin heavy chain 3, [RH, Score=1994, Expect=0.0]} {Mouse: ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [RH, Score=2089, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [RH, Score=2084, Expect=0.0]; ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [RH, Score=2081, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [RH, Score=2056, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [RH, Score=2053, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [RH, Score=2042, Expect=0.0]; ENSMUSG00000060180, Myh13, myosin, heavy polypeptide 13, skeletal muscle, [RH, Score=2001, Expect=0.0]; ENSMUSG00000020908, Myh3, myosin, heavy polypeptide 3, skeletal muscle, embryonic, [RH, Score=2001, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [RH, Score=2114, Expect=0.0]} {Celegans: WBGene00019064, myo-5, MYOsin heavy chain structural genes, [RH, Score=1969, Expect=0.0]} {Smed: dd_Smed_v6_579_0_1, dd_Smed_v6_579_0_1, [RH, Score=2701, Expect=0.0]} {RNA1509_4871} {RNA1310_412.1} {RNA815_129.1} Mlig455_055561 {REF} {Length: 6745} {Pfam: Myosin head (motor domain) [PF00063.23, score=936.1]; Myosin tail [PF01576.21, score=581.5]; Myosin N-terminal SH3-like domain [PF02736.21, score=58.5]; Protein of unknown function (DUF1664) [PF07889.14, score=40.5]; Crescentin protein [PF19220.2, score=36.5]} {Human: ENSG00000197616, MYH6, myosin heavy chain 6, [RH, Score=2093, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [RH, Score=2086, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [RH, Score=2045, Expect=0.0]; ENSG00000125414, MYH2, myosin heavy chain 2, [RH, Score=2045, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [RH, Score=2035, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [RH, Score=2033, Expect=0.0]; ENSG00000109063, MYH3, myosin heavy chain 3, [RH, Score=1993, Expect=0.0]} {Mouse: ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [RH, Score=2092, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [RH, Score=2083, Expect=0.0]; ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [RH, Score=2080, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [RH, Score=2056, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [RH, Score=2051, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [RH, Score=2041, Expect=0.0]; ENSMUSG00000060180, Myh13, myosin, heavy polypeptide 13, skeletal muscle, [RH, Score=2001, Expect=0.0]; ENSMUSG00000020908, Myh3, myosin, heavy polypeptide 3, skeletal muscle, embryonic, [RH, Score=2000, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [RH, Score=2114, Expect=0.0]} {Celegans: WBGene00019064, myo-5, MYOsin heavy chain structural genes, [RH, Score=1969, Expect=0.0]} {Smed: dd_Smed_v6_579_0_1, dd_Smed_v6_579_0_1, [RH, Score=2701, Expect=0.0]} {RNA1509_4871} {RNA1310_412.1} {RNA815_129.1} |
| 3. | MligTC455_32785 | 1324 | 27.59 | Mlig455_043578 | Neo: - Age: logFC(26M/2M)=-0.385 Region-enriched R7: 1.916/0.00055 |
PRKAR2A | 1.815 | - | - | 0.851 | - | 0.964 | - | Mlig455_043578 {REF} {Length: 3301} {TRANSSPLICED} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=137.7]; Regulatory subunit of type II PKA R-subunit [PF02197.19, score=45.3]} {Human: ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=369, Expect=2e-125]} {Mouse: ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [RH, Score=384, Expect=2e-131]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=391, Expect=8e-135]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=215, Expect=1e-66]} {Smed: dd_Smed_v6_2902_0_1, dd_Smed_v6_2902_0_1, [Score=436, Expect=1e-152]} {RNA1509_11023} {RNA1310_10559.2} {RNA815_4244.1} |
| 4. | MligTC455_45247 | 241 | 5.02 | Mlig455_011888 | Neo: - Age: Down-Up-Up |
NLK | 0.973 | - | - | - | 0.973 | - | - | Mlig455_011888 {REF} {Length: 3725} {Pfam: Protein kinase domain [PF00069.27, score=208.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=94.9]; ABC1 atypical kinase-like domain [PF03109.18, score=19.9]; Fungal protein kinase [PF17667.3, score=19.4]} {Human: ENSG00000087095, NLK, nemo like kinase, [RH, Score=445, Expect=8e-151]} {Mouse: ENSMUSG00000017376, Nlk, nemo like kinase, [RH, Score=445, Expect=6e-151]} {Dmel: FBgn0011817, nmo, nemo, [RH, Score=450, Expect=2e-154]} {Celegans: WBGene00003048, lit-1, Serine/threonine kinase NLK, [RH, Score=394, Expect=1e-130]} {Smed: dd_Smed_v6_4172_0_3, dd_Smed_v6_4172_0_3, [RH, Score=431, Expect=1e-146]} {RNA1509_38882, RNA1509_6933} {RNA1310_7196.1, RNA1509_38882} {RNA1509_38882, RNA815_3487.2} |
| 5. | MligTC455_37168 | 752 | 15.67 | Mlig455_032391 | Neo: - Age: Up-Down-Up Region-enriched R5: 1.708/0.00065 Regeneration-upregulated BL: 2.288 Regeneration-enriched BL: 2.288 |
CIC | 0.964 | - | - | - | 0.964 | - | - | Mlig455_032391 {REF} {Length: 2915} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4819) [PF16090.7, score=43.4]} {Human: ENSG00000079432, CIC, capicua transcriptional repressor, [RH, Score=108, Expect=1e-23]} {Mouse: ENSMUSG00000005442, Cic, capicua transcriptional repressor, [RH, Score=105, Expect=1e-22]} {Dmel: FBgn0262582, cic, capicua, [Score=90.5, Expect=3e-18]} {Celegans: WBGene00001560, gei-3, GEX Interacting protein, [RH, Score=103, Expect=2e-22]} {Smed: dd_Smed_v6_4601_0_1, dd_Smed_v6_4601_0_1, [RH, Score=101, Expect=8e-22]} {RNA1509_30705} {RNA1310_5821, RNA1509_30705} {RNA1509_30705, RNA815_6450} |
| 6. | MligTC455_49556 | 198 | 4.12 | Mlig455_050578 | Neo: - Age: Down-Up-Down |
CXXC1 | 0.962 | - | - | - | 0.962 | - | - | Mlig455_050578 {REF} {Length: 4819} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=40.5]; CXXC zinc finger domain [PF02008.22, score=35.1]} {Human: ENSG00000154832, CXXC1, CXXC finger protein 1, [RH, Score=84.3, Expect=1e-17]} {Mouse: ENSMUSG00000024560, Cxxc1, CXXC finger 1 (PHD domain), [Score=83.6, Expect=3e-16]} {Dmel: FBgn0030120, CG17440, [Score=87.0, Expect=4e-18]} {Celegans: WBGene00009180, nurf-1, Nucleosome-remodeling factor subunit NURF301-like, [Score=58.2, Expect=1e-08]} {Smed: dd_Smed_v6_15324_0_2, dd_Smed_v6_15324_0_2, [Score=90.9, Expect=3e-20]} {RNA1509_12196} {RNA1310_12173, RNA1509_12196} {RNA1509_12196, RNA815_16181} |
| 7. | MligTC455_42790 | 860 | 17.92 | Mlig455_001416 | Neo: - Age: - |
WDR5 | 0.959 | - | - | - | 0.959 | - | - | Mlig455_001416 {REF} {Length: 1676} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=206.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=84.4]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=48.2]; Nucleoporin Nup120/160 [PF11715.10, score=46.4]; WD40-like domain [PF17005.7, score=26.5]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=24.5]} {Human: ENSG00000196363, WDR5, WD repeat domain 5, [RH, Score=581, Expect=0.0]} {Mouse: ENSMUSG00000026917, Wdr5, WD repeat domain 5, [RH, Score=581, Expect=0.0]} {Dmel: FBgn0040066, wds, will die slowly, [RH, Score=571, Expect=0.0]} {Celegans: WBGene00006474, wdr-5.1, WD repeat-containing protein wdr-5.1, [RH, Score=460, Expect=5e-163]} {Smed: dd_Smed_v6_2866_0_1, dd_Smed_v6_2866_0_1, [RH, Score=541, Expect=0.0]} {RNA1509_14300, RNA1509_46519} {RNA1310_18453, RNA1509_14300, RNA1509_46519} {RNA1509_14300, RNA1509_46519, RNA815_7409} |
| 8. | MligTC455_47951 | 205 | 4.27 | Mlig455_070893 | Neo: - Age: - |
GRID2IP | 0.959 | - | - | - | 0.959 | - | - | Mlig455_070893 {REF} {Length: 3502} {Pfam: PDZ domain [PF00595.26, score=40.9]; PDZ domain [PF17820.3, score=32.7]; PDZ domain [PF13180.8, score=22.9]; RhoGEF domain [PF00621.22, score=18.8]} {Human: ENSG00000215045, GRID2IP, Grid2 interacting protein, [Score=57.4, Expect=7e-08]} {Mouse: ENSMUSG00000022580, Rhpn1, rhophilin, Rho GTPase binding protein 1, [Score=50.4, Expect=7e-06]; ENSMUSG00000010825, Grid2ip, glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1, [Score=50.1, Expect=1e-05]} {Dmel: FBgn0264598, PsGEF, Protostome-specific GEF, [Score=78.2, Expect=2e-14]} {Smed: dd_Smed_v6_12613_0_1, dd_Smed_v6_12613_0_1, [Score=55.8, Expect=5e-08]} {RNA1509_38079} {RNA1310_16413, RNA1509_38079} {RNA1509_38079, RNA815_31333} |
| 9. | MligTC455_29525 | 488 | 10.16 | Mlig455_051242 | Neo: - Age: Up-Down-Down |
R3HCC1 | 0.957 | - | - | - | - | - | 0.957 | Mlig455_051242 {REF} {Length: 3423} {Human: ENSG00000104679, R3HCC1, R3H domain and coiled-coil containing 1, [RH, Score=58.5, Expect=2e-08]} {Mouse: ENSMUSG00000034194, R3hcc1, R3H domain and coiled-coil containing 1, [RH, Score=57.4, Expect=4e-08]} {RNA1509_18488} {RNA1310_14196.1} {RNA815_3151.1} |
| 10. | MligTC455_20658 | 197 | 4.11 | Mlig455_038718, Mlig455_063446 | Neo: - Age: - |
0.953 | - | - | - | 0.953 | - | - | Mlig455_038718 {REF} {Length: 1687} {NoTransDecoderORF} {RNA1509_18723} {RNA1310_2938.1} {RNA815_14343.1} Mlig455_063446 {REF} {Length: 394} {NoTransDecoderORF} {RNA1509_51071} {RNA1310_2938.1} {RNA815_14343.3} |
Berezikov Lab - 2020-2021 © ERIBA