M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34178

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34178 255 5.32 Mlig455_061293

Neo: -

Age: -

 Mlig455_061293 {REF} {Length: 904} {TRANSSPLICED} {Pfam: IclR helix-turn-helix domain [PF09339.12, score=21.1]; Homeodomain-like domain [PF13565.8, score=20.1]; Helix-turn-helix domain [PF13936.8, score=18.4]; Winged helix-turn-helix DNA-binding [PF13412.8, score=18.2]} {RNA1509_57191} {RNA1310_32310.1} {RNA815_18533}

Cumulative graph for MligTC455_34178

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.848 3.033 0.15711 0.77592
RegionR2 0.616 3.033 0.52100 0.89532
RegionR3 0.594 3.033 0.49930 0.99420
RegionR4 1.545 3.033 0.04955 0.19142
RegionR5 1.139 3.033 0.09962 0.30428
RegionR6 0.074 3.033 0.82339 1.00000
RegionR7 0.946 3.033 0.32379 0.95876
RegionR8 0.934 3.033 0.38754 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.251 3.033 0.99993 1.00000
RegenerationR2 -0.158 3.033 0.73397 0.96726
RegenerationR3 0.412 3.033 0.41831 0.81366
RegenerationR4 -0.166 3.033 0.74898 0.96996
RegenerationR5 -0.152 3.033 0.73124 0.96439
RegenerationR6 0.902 3.033 0.10684 0.40457
RegenerationBL -1.864 3.033 0.07005 0.30818
RegenerationTP -0.345 3.033 0.64193 0.98423


Genes with expression patterns similar to MligTC455_34178

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34178 255 5.32 Mlig455_061293

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_061293 {REF} {Length: 904} {TRANSSPLICED} {Pfam: IclR helix-turn-helix domain [PF09339.12, score=21.1]; Homeodomain-like domain [PF13565.8, score=20.1]; Helix-turn-helix domain [PF13936.8, score=18.4]; Winged helix-turn-helix DNA-binding [PF13412.8, score=18.2]} {RNA1509_57191} {RNA1310_32310.1} {RNA815_18533}
2. MligTC455_34177 339 7.06 Mlig455_061265

Neo: -

Age: -

 TMEM267 5.376 0.957 0.876 0.977 0.974 0.818 0.774 Mlig455_061265 {REF} {Length: 3171} {TRANSSPLICED} {Human: ENSG00000151881, TMEM267, transmembrane protein 267, [RH, Score=54.3, Expect=3e-08]} {Mouse: ENSMUSG00000074634, Tmem267, transmembrane protein 267, [RH, Score=51.2, Expect=3e-07]} {RNA1509_12146, RNA1509_2145} {RNA1310_18404.1, RNA1509_12146, RNA1509_2145} {RNA1509_12146, RNA1509_2145, RNA815_17956}
3. MligTC455_27614 854 17.8 Mlig455_062795

Neo: -

Age: -

Region-enriched R4: 2.040/0.00002

 GALNT2 0.96 - - - - - 0.960 Mlig455_062795 {REF} {Length: 3474} {TRANSSPLICED} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=106.9]; Ricin-type beta-trefoil lectin domain [PF00652.24, score=65.8]; Glycosyltransferase like family 2 [PF10111.11, score=38.1]; N-terminal domain of galactosyltransferase [PF02709.16, score=21.5]} {Human: ENSG00000143641, GALNT2, polypeptide N-acetylgalactosaminyltransferase 2, [RH, Score=566, Expect=0.0]} {Mouse: ENSMUSG00000089704, Galnt2, polypeptide N-acetylgalactosaminyltransferase 2, [RH, Score=569, Expect=0.0]; ENSMUSG00000092329, Gm20388, predicted gene 20388, [RH, Score=562, Expect=0.0]} {Dmel: FBgn0031530, pgant2, polypeptide GalNAc transferase 2, [RH, Score=535, Expect=0.0]} {Celegans: WBGene00001629, gly-4, Polypeptide N-acetylgalactosaminyltransferase 4, [RH, Score=533, Expect=0.0]} {Smed: dd_Smed_v6_5368_1_1, dd_Smed_v6_5368_1_1, [Score=406, Expect=3e-135]} {RNA1509_18565, RNA1509_4755, RNA1509_4787} {RNA1310_7468.1, RNA1509_18565, RNA1509_4787} {RNA1509_18565, RNA1509_4787, RNA815_1350.1}
4. MligTC455_42320 1382 28.8 Mlig455_042834, Mlig455_045852, Mlig455_045868

Neo: -

Age: -

 GPAA1 0.957 - - 0.957 - - -

Mlig455_042834 {REF} {Length: 2876} {Pfam: Gaa1-like, GPI transamidase component [PF04114.16, score=339.5]} {Human: ENSG00000197858, GPAA1, glycosylphosphatidylinositol anchor attachment 1, [RH, Score=221, Expect=1e-62]} {Mouse: ENSMUSG00000022561, Gpaa1, GPI anchor attachment protein 1, [RH, Score=226, Expect=1e-64]} {Dmel: FBgn0029818, GAA1, Glycosylphosphatidylinositol anchor attachment 1, [RH, Score=224, Expect=1e-63]} {Celegans: WBGene00018006, hpo-3, [RH, Score=118, Expect=2e-27]} {Smed: dd_Smed_v6_6209_0_1, dd_Smed_v6_6209_0_1, [RH, Score=276, Expect=8e-84]} {RNA1509_40488} {RNA1310_6236} {RNA815_10686}

Mlig455_045852 {REF} {Length: 2604} {Pfam: Gaa1-like, GPI transamidase component [PF04114.16, score=338.5]} {Human: ENSG00000197858, GPAA1, glycosylphosphatidylinositol anchor attachment 1, [RH, Score=218, Expect=5e-62]} {Mouse: ENSMUSG00000022561, Gpaa1, GPI anchor attachment protein 1, [RH, Score=223, Expect=4e-64]} {Dmel: FBgn0029818, GAA1, Glycosylphosphatidylinositol anchor attachment 1, [RH, Score=224, Expect=2e-64]} {Celegans: WBGene00018006, hpo-3, [Score=114, Expect=3e-26]} {Smed: dd_Smed_v6_6209_0_1, dd_Smed_v6_6209_0_1, [RH, Score=280, Expect=2e-85]} {RNA1509_40488} {RNA1310_6236} {RNA815_10686}

Mlig455_045868 {REF} {Length: 2590} {Pfam: Gaa1-like, GPI transamidase component [PF04114.16, score=338.5]} {Human: ENSG00000197858, GPAA1, glycosylphosphatidylinositol anchor attachment 1, [RH, Score=218, Expect=5e-62]} {Mouse: ENSMUSG00000022561, Gpaa1, GPI anchor attachment protein 1, [RH, Score=223, Expect=4e-64]} {Dmel: FBgn0029818, GAA1, Glycosylphosphatidylinositol anchor attachment 1, [RH, Score=224, Expect=2e-64]} {Celegans: WBGene00018006, hpo-3, [Score=114, Expect=3e-26]} {Smed: dd_Smed_v6_6209_0_1, dd_Smed_v6_6209_0_1, [RH, Score=280, Expect=2e-85]} {RNA1509_40488} {RNA1310_6236} {RNA815_10686}
5. MligTC455_46364 391 8.14 Mlig455_010769

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.366/0.01601

 RCC1L 0.957 - - - 0.957 - - Mlig455_010769 {REF} {Length: 2719} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=136.1]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=68.6]} {Human: ENSG00000274523, RCC1L, RCC1 like, [RH, Score=221, Expect=5e-66]} {Mouse: ENSMUSG00000061979, Rcc1l, reculator of chromosome condensation 1 like, [RH, Score=236, Expect=4e-72]} {Dmel: FBgn0031286, CG3862, [RH, Score=247, Expect=2e-76]} {Celegans: WBGene00012370, W09G3.7, [RH, Score=166, Expect=2e-46]} {Smed: dd_Smed_v6_7271_0_3, dd_Smed_v6_7271_0_3, [RH, Score=164, Expect=2e-45]} {RNA1509_25090} {RNA1310_14056} {RNA815_14642.1}
6. MligTC455_28062 172 3.58 Mlig455_053509

Neo: -

Age: Down-Down-Up

 TFB1M 0.954 - - - - - 0.954 Mlig455_053509 {REF} {Length: 1823} {TRANSSPLICED} {Pfam: Ribosomal RNA adenine dimethylase [PF00398.22, score=118.8]; Methyltransferase domain [PF13649.8, score=22.9]; Protein of unknown function (DUF1698) [PF08003.13, score=19.7]; Methyltransferase domain [PF13489.8, score=18.7]} {Human: ENSG00000029639, TFB1M, transcription factor B1, mitochondrial, [RH, Score=237, Expect=3e-75]} {Mouse: ENSMUSG00000036983, Tfb1m, transcription factor B1, mitochondrial, [RH, Score=230, Expect=1e-72]} {Dmel: FBgn0261381, mtTFB1, Mitochondrial Transcription Factor B1, [RH, Score=198, Expect=2e-60]} {Celegans: WBGene00020189, tfbm-1, Dimethyladenosine transferase 1, mitochondrial, [RH, Score=243, Expect=2e-77]} {Smed: dd_Smed_v6_8684_0_1, dd_Smed_v6_8684_0_1, [RH, Score=282, Expect=7e-93]} {RNA1509_31959, RNA1509_40082, RNA1509_41405} {RNA1310_25999, RNA1509_31959, RNA1509_40082, RNA1509_41405} {RNA1509_31959, RNA1509_40082, RNA1509_41405, RNA815_11217}
7. MligTC455_34313 244 5.09 Mlig455_061315

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_061315 {REF} {Length: 1497} {RNA1509_26825} {RNA1310_21859} {RNA815_14274}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA