M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34289

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34289 160 3.33 Mlig455_041808

Neo: -

Age: -

Region-enriched R5: 2.798/0.00006

 RUNDC3B Mlig455_041808 {REF} {Length: 3837} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=36.7]} {Human: ENSG00000105784, RUNDC3B, RUN domain containing 3B, [RH, Score=106, Expect=5e-24]} {Mouse: ENSMUSG00000040570, Rundc3b, RUN domain containing 3B, [RH, Score=105, Expect=1e-23]; ENSMUSG00000006575, Rundc3a, RUN domain containing 3A, [RH, Score=100, Expect=2e-22]} {Dmel: FBgn0051064, CG31064, [Score=59.3, Expect=6e-09]} {Smed: dd_Smed_v6_12008_0_1, dd_Smed_v6_12008_0_1, [RH, Score=97.4, Expect=3e-21]} {RNA1509_59598} {RNA1310_25993, RNA1509_59598} {RNA1509_59598, RNA815_6485}

Cumulative graph for MligTC455_34289

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.714 2.494 0.33786 0.98402
RegionR2 -0.122 2.494 0.89305 1.00000
RegionR3 -0.452 2.494 0.95249 1.00000
RegionR4 1.633 2.494 0.09543 0.29799
RegionR5 2.798 2.494 0.00000 0.00006
RegionR6 1.202 2.494 0.18386 0.74836
RegionR7 0.013 2.494 0.85990 1.00000
RegionR8 -0.359 2.494 0.94086 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.049 2.494 0.99999 1.00000
RegenerationR2 0.696 2.494 0.25618 0.70249
RegenerationR3 1.886 2.494 0.00768 0.16063
RegenerationR4 0.107 2.494 0.88151 1.00000
RegenerationR5 -0.368 2.494 0.44874 0.83027
RegenerationR6 0.28 2.494 0.67381 0.91034
RegenerationBL 0.017 2.494 0.99047 1.00000
RegenerationTP 1.008 2.494 0.34888 0.79042


Genes with expression patterns similar to MligTC455_34289

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34289 160 3.33 Mlig455_041808

Neo: -

Age: -

Region-enriched R5: 2.798/0.00006

 RUNDC3B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_041808 {REF} {Length: 3837} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=36.7]} {Human: ENSG00000105784, RUNDC3B, RUN domain containing 3B, [RH, Score=106, Expect=5e-24]} {Mouse: ENSMUSG00000040570, Rundc3b, RUN domain containing 3B, [RH, Score=105, Expect=1e-23]; ENSMUSG00000006575, Rundc3a, RUN domain containing 3A, [RH, Score=100, Expect=2e-22]} {Dmel: FBgn0051064, CG31064, [Score=59.3, Expect=6e-09]} {Smed: dd_Smed_v6_12008_0_1, dd_Smed_v6_12008_0_1, [RH, Score=97.4, Expect=3e-21]} {RNA1509_59598} {RNA1310_25993, RNA1509_59598} {RNA1509_59598, RNA815_6485}
2. MligTC455_15457 563 11.73 Mlig455_041945, Mlig455_042023

Neo: Germline

Age: -

Region-specific R5: 3.301

Region-enriched R5: 2.860/0.00000

 DAZAP1 3.394 0.715 0.772 0.965 0.942 - -

Mlig455_041945 {REF} {Length: 4887} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=107.5]; RNA recognition motif [PF16367.7, score=33.1]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [Score=80.9, Expect=2e-15]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [Score=79.7, Expect=5e-15]} {Dmel: FBgn0027841, CstF64, Cleavage stimulation factor 64 kD subunit, [Score=62.8, Expect=9e-10]} {Celegans: WBGene00007396, tiar-3, TIA-1/TIAL RNA binding protein homolog, [Score=70.1, Expect=5e-12]} {Smed: dd_Smed_v6_986_0_1, dd_Smed_v6_986_0_1, [Score=67.8, Expect=9e-12]} {RNA1509_20679, RNA1509_36169} {RNA1310_2386.1, RNA1509_36169} {RNA1509_36169, RNA815_3986}

Mlig455_042023 {REF} {Length: 2841} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]; RNA recognition motif [PF16367.7, score=36.9]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [Score=75.1, Expect=7e-14]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [Score=71.6, Expect=6e-13]} {Dmel: FBgn0027841, CstF64, Cleavage stimulation factor 64 kD subunit, [Score=64.3, Expect=1e-10]} {Celegans: WBGene00003902, pab-1, Polyadenylate-binding protein, [Score=75.1, Expect=5e-14]} {Smed: dd_Smed_v6_2434_0_1, dd_Smed_v6_2434_0_1, [Score=65.9, Expect=2e-11]} {RNA1509_20679} {RNA1310_2386.1} {RNA815_3986}
3. MligTC455_25626 505 10.53 Mlig455_015518

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 1.838/0.00000

 2.433 0.729 - 0.738 0.966 - - Mlig455_015518 {REF} {Length: 4712} {Pfam: Apoptosis regulator proteins, Bcl-2 family [PF00452.21, score=22.6]} {Mouse: ENSMUSG00000061601, Pclo, piccolo (presynaptic cytomatrix protein), [Score=62.4, Expect=3e-09]} {RNA1509_26862, RNA1509_54529, RNA1509_57094} {RNA1310_16287, RNA1509_54529, RNA1509_57094} {RNA1509_54529, RNA1509_57094, RNA815_4831.1}
4. MligTC455_38150 274 5.7 Mlig455_039526

Neo: -

Age: -

 LONP2 2.415 0.710 - - 0.965 - 0.740 Mlig455_039526 {REF} {Length: 2925} {Pfam: Lon protease (S16) C-terminal proteolytic domain [PF05362.15, score=142.2]; Subunit ChlI of Mg-chelatase [PF13541.8, score=30.9]} {Human: ENSG00000102910, LONP2, lon peptidase 2, peroxisomal, [Score=172, Expect=5e-45]} {Mouse: ENSMUSG00000047866, Lonp2, lon peptidase 2, peroxisomal, [Score=169, Expect=4e-46]} {Dmel: FBgn0036892, Lon, Lon protease, [Score=130, Expect=3e-31]} {Celegans: WBGene00013541, lonp-2, Lon protease homolog 2, peroxisomal, [Score=162, Expect=5e-42]} {Smed: dd_Smed_v6_3971_0_1, dd_Smed_v6_3971_0_1, [Score=122, Expect=8e-29]} {RNA1509_26509} {RNA1310_12358} {RNA815_34278}
5. MligTC455_10562 356 7.42 Mlig455_023642

Neo: -

Age: -

 RRAGC 1.833 - - 0.883 0.950 - - Mlig455_023642 {REF} {Length: 3636} {Pfam: Gtr1/RagA G protein conserved region [PF04670.14, score=210.6]; ADP-ribosylation factor family [PF00025.23, score=31.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=24.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=19.5]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000116954, RRAGC, Ras related GTP binding C, [RH, Score=409, Expect=2e-140]; ENSG00000025039, RRAGD, Ras related GTP binding D, [RH, Score=399, Expect=1e-136]} {Mouse: ENSMUSG00000028646, Rragc, Ras-related GTP binding C, [RH, Score=408, Expect=2e-140]; ENSMUSG00000028278, Rragd, Ras-related GTP binding D, [RH, Score=399, Expect=5e-137]} {Dmel: FBgn0033272, RagC-D, Ras-related GTP binding C/D, [RH, Score=400, Expect=2e-137]} {Celegans: WBGene00012497, ragc-1, RAs-related GTP binding protein C homolog, [RH, Score=283, Expect=1e-92]} {Smed: dd_Smed_v6_5653_0_1, dd_Smed_v6_5653_0_1, [RH, Score=419, Expect=2e-145]} {RNA1509_9291} {RNA1310_15858.1} {RNA815_8637}
6. MligTC455_31589 281 5.85 Mlig455_061267, Mlig455_062654

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 2.632/0.00015

 1.724 0.771 - 0.953 - - -

Mlig455_061267 {REF} {Length: 2572} {TRANSSPLICED} {RNA1509_28161} {RNA1310_8643} {RNA815_2213}

Mlig455_062654 {REF} {Length: 2995} {TRANSSPLICED} {RNA1509_28161} {RNA1310_8643} {RNA815_2213}
7. MligTC455_45641 460 9.59 Mlig455_044942

Neo: -

Age: logFC(26M/2M)=0.242

 NFAT5 1.687 - - 0.735 0.952 - - Mlig455_044942 {REF} {Length: 3006} {Pfam: Rel homology dimerisation domain [PF16179.7, score=44.4]} {Human: ENSG00000102908, NFAT5, nuclear factor of activated T cells 5, [Score=233, Expect=7e-64]} {Mouse: ENSMUSG00000003847, Nfat5, nuclear factor of activated T cells 5, [Score=232, Expect=8e-64]} {Dmel: FBgn0030505, NFAT, NFAT nuclear factor, [Score=197, Expect=1e-54]} {Smed: dd_Smed_v6_5978_0_1, dd_Smed_v6_5978_0_1, [Score=226, Expect=6e-63]} {RNA1509_28577} {RNA1310_10750, RNA1509_28577} {RNA1509_28577, RNA815_11298}
8. MligTC455_40173 468 9.75 Mlig455_015114

Neo: -

Age: -

 0.983 - - - 0.983 - - Mlig455_015114 {REF} {Length: 5090} {Pfam: 3-Ketosteroid 9alpha-hydroxylase C-terminal domain [PF19298.1, score=142.0]; Rieske [2Fe-2S] domain [PF00355.28, score=64.7]; Rieske-like [2Fe-2S] domain [PF13806.8, score=23.0]} {Dmel: FBgn0259697, nvd, neverland, [RH, Score=275, Expect=3e-88]} {Celegans: WBGene00007536, daf-36, Cholesterol 7-desaturase, [RH, Score=290, Expect=2e-94]} {RNA1509_48820} {RNA1310_10609} {RNA815_10029}
9. MligTC455_23397 526 10.95 Mlig455_009066

Neo: -

Age: logFC(26M/2M)=0.589

 NGLY1 0.968 - - - 0.968 - - Mlig455_009066 {REF} {Length: 4333} {Pfam: PNGase C-terminal domain, mannose-binding module PAW [PF04721.19, score=209.7]; PUB domain [PF09409.12, score=60.6]; Transglutaminase-like superfamily [PF01841.21, score=47.8]; Rad4 transglutaminase-like domain [PF03835.17, score=47.2]; Thioredoxin [PF00085.22, score=44.9]; Thioredoxin-like domain [PF13098.8, score=19.1]} {Human: ENSG00000151092, NGLY1, N-glycanase 1, [RH, Score=399, Expect=3e-126]} {Mouse: ENSMUSG00000021785, Ngly1, N-glycanase 1, [RH, Score=417, Expect=4e-133]} {Dmel: FBgn0033050, Pngl, PNGase-like, [RH, Score=307, Expect=3e-92]} {Celegans: WBGene00010160, png-1, Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase, [RH, Score=263, Expect=2e-76]} {Smed: dd_Smed_v6_5705_0_1, dd_Smed_v6_5705_0_1, [RH, Score=286, Expect=2e-83]} {RNA1509_9974} {RNA1310_3958} {RNA815_834.1}
10. MligTC455_39552 477 9.94 Mlig455_067435

Neo: Irradiation

Age: -

Region-enriched R4: 1.538/0.01409

 B3GNT5 0.965 - - - 0.965 - - Mlig455_067435 {REF} {Length: 3849} {TRANSSPLICED} {Pfam: Galactosyltransferase [PF01762.23, score=124.8]} {Human: ENSG00000176597, B3GNT5, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, [RH, Score=127, Expect=5e-32]; ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [RH, Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=117, Expect=8e-29]; ENSMUSG00000079445, B3gnt7, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7, [Score=117, Expect=2e-28]; ENSMUSG00000029431, B3gnt4, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4, [Score=112, Expect=3e-27]} {Dmel: FBgn0000221, brn, brainiac, [Score=132, Expect=9e-35]} {Celegans: WBGene00000270, bre-5, Beta-1,3-galactosyltransferase bre-5, [Score=108, Expect=2e-26]} {Smed: dd_Smed_v6_8163_0_1, dd_Smed_v6_8163_0_1, [RH, Score=238, Expect=3e-74]} {RNA1509_21769, RNA1509_8889} {RNA1310_13743.1, RNA1509_21769, RNA1509_8889} {RNA1509_21769, RNA1509_8889, RNA815_1518.2}
11. MligTC455_12908 153 3.18 Mlig455_067228

Neo: -

Age: logFC(26M/2M)=0.279

Region-enriched R5: 2.801/0.00845

 0.961 - - 0.961 - - - Mlig455_067228 {REF} {Length: 3535} {Pfam: Autophagy-related protein 27 [PF09451.12, score=62.8]; Mannose-6-phosphate receptor [PF02157.17, score=31.9]; Cation-independent mannose-6-phosphate receptor repeat [PF00878.20, score=19.0]} {Smed: dd_Smed_v6_1447_0_1, dd_Smed_v6_1447_0_1, [Score=85.5, Expect=1e-19]} {RNA1509_23642, RNA1509_24361, RNA1509_35136, RNA1509_46544} {RNA1310_25716.2, RNA1509_23642, RNA1509_24361, RNA1509_35136, RNA1509_46544} {RNA1509_23642, RNA1509_24361, RNA1509_35136, RNA1509_46544, RNA815_6225}
12. MligTC455_34249 231 4.81 Mlig455_062909

Neo: Int S/G2/M

Age: Up-Down-Down

 YTHDC2 0.961 - - - 0.961 - - Mlig455_062909 {REF} {Length: 6356} {TRANSSPLICED} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=48.5]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=39.3]; R3H domain [PF01424.24, score=36.0]; AAA domain [PF13245.8, score=29.1]; KaiC [PF06745.15, score=20.4]} {Human: ENSG00000047188, YTHDC2, YTH domain containing 2, [RH, Score=917, Expect=0.0]} {Mouse: ENSMUSG00000034653, Ythdc2, YTH domain containing 2, [RH, Score=928, Expect=0.0]} {Dmel: FBgn0004581, bgcn, benign gonial cell neoplasm, [RH, Score=259, Expect=5e-70]} {Celegans: WBGene00009922, F52B5.3, [RH, Score=212, Expect=4e-55]} {Smed: dd_Smed_v6_4815_0_1, dd_Smed_v6_4815_0_1, [Score=214, Expect=7e-56]} {RNA1509_15401} {RNA1310_1583.1} {RNA815_6960}
13. MligTC455_25900 124 2.57 Mlig455_026948

Neo: -

Age: logFC(26M/2M)=7.757

 0.959 - - - - - 0.959 Mlig455_026948 {REF} {Length: 4613} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}
14. MligTC455_39362 1158 24.13 Mlig455_069375

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_069375 {REF} {Length: 2263} {TRANSSPLICED} {RNA1509_21193} {RNA1310_18941} {RNA815_22823}
15. MligTC455_48481 373 7.78 Mlig455_047393

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.950/0.00002

 TNFAIP8L2 0.952 - - - 0.952 - - Mlig455_047393 {REF} {Length: 2175} {Pfam: Domain of unknown function (DUF758) [PF05527.13, score=157.4]} {Human: ENSG00000163154, TNFAIP8L2, TNF alpha induced protein 8 like 2, [Score=110, Expect=6e-29]} {Mouse: ENSMUSG00000013707, Tnfaip8l2, tumor necrosis factor, alpha-induced protein 8-like 2, [Score=107, Expect=4e-28]} {Dmel: FBgn0034894, sigmar, salivary glands marred, [Score=90.5, Expect=1e-21]} {Smed: dd_Smed_v6_6451_0_1, dd_Smed_v6_6451_0_1, [Score=131, Expect=2e-37]} {RNA1509_32712} {RNA1310_28870, RNA1509_32712} {RNA1509_32712, RNA815_14163}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA