M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34374

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34374 2377 49.53 Mlig455_032521

Neo: -

Age: logFC(26M/2M)=-0.486

Region-enriched R4: 1.400/0.00000

 PAM16 Mlig455_032521 {REF} {Length: 865} {TRANSSPLICED} {Pfam: Pam16 [PF03656.15, score=120.3]} {Human: ENSG00000282228, PAM16, presequence translocase associated motor 16, [RH, Score=98.6, Expect=2e-26]; ENSG00000217930, PAM16, presequence translocase associated motor 16, [RH, Score=98.6, Expect=2e-26]} {Mouse: ENSMUSG00000045886, Gm9803, predicted gene 9803, [RH, Score=100, Expect=9e-28]; ENSMUSG00000014301, Pam16, presequence translocase-asssociated motor 16 homolog (S. cerevisiae), [RH, Score=100, Expect=9e-28]} {Dmel: FBgn0038387, blp, black pearl, [RH, Score=114, Expect=5e-33]} {Celegans: WBGene00009734, F45G2.8, Mitochondrial import inner membrane translocase subunit tim-16, [RH, Score=105, Expect=1e-29]} {Smed: dd_Smed_v6_1720_0_1, dd_Smed_v6_1720_0_1, [RH, Score=110, Expect=6e-32]} {RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044} {RNA1310_40855.1, RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044} {RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044, RNA815_19465}

Cumulative graph for MligTC455_34374

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.666 5.792 0.26514 0.91477
RegionR2 -0.716 5.792 0.01319 0.11986
RegionR3 0.418 5.792 0.06694 0.45749
RegionR4 1.4 5.792 0.00000 0.00000
RegionR5 0.701 5.792 0.00138 0.01321
RegionR6 0.25 5.792 0.30012 0.89146
RegionR7 -0.578 5.792 0.07212 0.51753
RegionR8 -0.81 5.792 0.05090 0.44145

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.719 5.792 0.09711 0.81199
RegenerationR2 -0.71 5.792 0.00709 0.13379
RegenerationR3 -0.538 5.792 0.04078 0.35439
RegenerationR4 -0.492 5.792 0.06233 0.39965
RegenerationR5 -0.093 5.792 0.71058 0.95556
RegenerationR6 -0.019 5.792 0.94402 1.00000
RegenerationBL 0.382 5.792 0.20306 0.54269
RegenerationTP 0.721 5.792 0.03352 0.30574


Genes with expression patterns similar to MligTC455_34374

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34374 2377 49.53 Mlig455_032521

Neo: -

Age: logFC(26M/2M)=-0.486

Region-enriched R4: 1.400/0.00000

 PAM16 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032521 {REF} {Length: 865} {TRANSSPLICED} {Pfam: Pam16 [PF03656.15, score=120.3]} {Human: ENSG00000282228, PAM16, presequence translocase associated motor 16, [RH, Score=98.6, Expect=2e-26]; ENSG00000217930, PAM16, presequence translocase associated motor 16, [RH, Score=98.6, Expect=2e-26]} {Mouse: ENSMUSG00000045886, Gm9803, predicted gene 9803, [RH, Score=100, Expect=9e-28]; ENSMUSG00000014301, Pam16, presequence translocase-asssociated motor 16 homolog (S. cerevisiae), [RH, Score=100, Expect=9e-28]} {Dmel: FBgn0038387, blp, black pearl, [RH, Score=114, Expect=5e-33]} {Celegans: WBGene00009734, F45G2.8, Mitochondrial import inner membrane translocase subunit tim-16, [RH, Score=105, Expect=1e-29]} {Smed: dd_Smed_v6_1720_0_1, dd_Smed_v6_1720_0_1, [RH, Score=110, Expect=6e-32]} {RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044} {RNA1310_40855.1, RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044} {RNA1509_17135, RNA1509_19581, RNA1509_22679, RNA1509_44044, RNA815_19465}
2. MligTC455_34376 3394 70.7 Mlig455_068724

Neo: Int S/G2/M

Age: Down-Up-Up

 PAM16 4.6 0.912 0.894 - 0.935 0.897 0.962 Mlig455_068724 {REF} {Length: 866} {TRANSSPLICED} {Pfam: Pam16 [PF03656.15, score=121.0]} {Human: ENSG00000217930, PAM16, presequence translocase associated motor 16, [RH, Score=98.2, Expect=2e-26]; ENSG00000282228, PAM16, presequence translocase associated motor 16, [RH, Score=98.2, Expect=2e-26]} {Mouse: ENSMUSG00000045886, Gm9803, predicted gene 9803, [RH, Score=100, Expect=1e-27]; ENSMUSG00000014301, Pam16, presequence translocase-asssociated motor 16 homolog (S. cerevisiae), [RH, Score=100, Expect=1e-27]} {Dmel: FBgn0038387, blp, black pearl, [RH, Score=114, Expect=4e-33]} {Celegans: WBGene00009734, F45G2.8, Mitochondrial import inner membrane translocase subunit tim-16, [RH, Score=106, Expect=4e-30]} {Smed: dd_Smed_v6_1720_0_1, dd_Smed_v6_1720_0_1, [RH, Score=110, Expect=7e-32]} {RNA1509_17135} {RNA1310_40855.1} {RNA815_19465}
3. MligTC455_34375 5245 109.27 Mlig455_068696

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R4: 1.179/0.00005

 PAM16 3.525 0.860 0.823 - - 0.888 0.954 Mlig455_068696 {REF} {Length: 859} {TRANSSPLICED} {Pfam: Pam16 [PF03656.15, score=123.4]} {Human: ENSG00000282228, PAM16, presequence translocase associated motor 16, [RH, Score=99.0, Expect=1e-26]; ENSG00000217930, PAM16, presequence translocase associated motor 16, [RH, Score=99.0, Expect=1e-26]} {Mouse: ENSMUSG00000045886, Gm9803, predicted gene 9803, [RH, Score=101, Expect=5e-28]; ENSMUSG00000014301, Pam16, presequence translocase-asssociated motor 16 homolog (S. cerevisiae), [RH, Score=101, Expect=5e-28]} {Dmel: FBgn0038387, blp, black pearl, [RH, Score=111, Expect=5e-32]} {Celegans: WBGene00009734, F45G2.8, Mitochondrial import inner membrane translocase subunit tim-16, [RH, Score=104, Expect=2e-29]} {Smed: dd_Smed_v6_1720_0_1, dd_Smed_v6_1720_0_1, [RH, Score=107, Expect=6e-31]} {RNA1509_17135, RNA1509_18372} {RNA1310_40855.1, RNA1509_18372} {RNA1509_18372, RNA815_19465}
4. MligTC455_17929 1110 23.12 Mlig455_049025, Mlig455_051565

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.399

Region-enriched R4: 1.396/0.01452
Region-enriched R5: 1.032/0.02828

 CRIPT 1.734 - - 0.950 0.784 - -

Mlig455_049025 {REF} {Length: 618} {TRANSSPLICED} {Pfam: Microtubule-associated protein CRIPT [PF10235.11, score=115.8]; Uncharacterized conserved protein (DUF2039) [PF10217.11, score=23.7]} {Human: ENSG00000119878, CRIPT, CXXC repeat containing interactor of PDZ3 domain, [RH, Score=147, Expect=4e-47]} {Mouse: ENSMUSG00000024146, Cript, cysteine-rich PDZ-binding protein, [RH, Score=147, Expect=1e-47]} {Dmel: FBgn0032153, CG4537, [RH, Score=116, Expect=3e-35]} {Celegans: WBGene00044614, C36B1.14, [RH, Score=72.4, Expect=5e-18]} {Smed: dd_Smed_v6_3121_0_1, dd_Smed_v6_3121_0_1, [RH, Score=84.0, Expect=2e-22]} {RNA1509_59797} {RNA1310_51705.2, RNA1509_59797} {RNA1509_59797, RNA815_26934}

Mlig455_051565 {REF} {Length: 618} {TRANSSPLICED} {Pfam: Microtubule-associated protein CRIPT [PF10235.11, score=115.8]; Uncharacterized conserved protein (DUF2039) [PF10217.11, score=23.7]} {Human: ENSG00000119878, CRIPT, CXXC repeat containing interactor of PDZ3 domain, [RH, Score=147, Expect=4e-47]} {Mouse: ENSMUSG00000024146, Cript, cysteine-rich PDZ-binding protein, [RH, Score=147, Expect=1e-47]} {Dmel: FBgn0032153, CG4537, [RH, Score=116, Expect=3e-35]} {Celegans: WBGene00044614, C36B1.14, [RH, Score=72.4, Expect=5e-18]} {Smed: dd_Smed_v6_3121_0_1, dd_Smed_v6_3121_0_1, [RH, Score=84.0, Expect=2e-22]} {RNA1509_59797} {RNA1310_51705.2} {RNA815_26934}
5. MligTC455_34491 759 15.8 Mlig455_059653

Neo: -

Age: Down-Up-Down

 SEC22B 0.959 - - - 0.959 - - Mlig455_059653 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: Regulated-SNARE-like domain [PF13774.8, score=46.2]; Synaptobrevin [PF00957.23, score=32.5]} {Human: ENSG00000265808, SEC22B, SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), [Score=182, Expect=8e-54]} {Mouse: ENSMUSG00000027879, Sec22b, SEC22 homolog B, vesicle trafficking protein, [Score=182, Expect=6e-54]} {Dmel: FBgn0260855, Sec22, Secretory 22, [Score=144, Expect=3e-40]} {Celegans: WBGene00018853, sec-22, Yeast SEC homolog, [Score=123, Expect=2e-32]} {Smed: dd_Smed_v6_8369_0_1, dd_Smed_v6_8369_0_1, [Score=201, Expect=8e-62]} {RNA1509_3231} {RNA1310_11259} {RNA815_14769}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA