M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34459

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34459 63 1.32 Mlig455_056794

Neo: -

Age: -

Region-enriched R5: 4.372/0.02539

 Mlig455_056794 {REF} {Length: 2361} {NoTransDecoderORF} {RNA1509_44936} {RNA1310_1458.1, RNA1509_44936} {RNA1509_44936, RNA815_5252.1}

Cumulative graph for MligTC455_34459

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.051 1.207 1.00000 1.00000
RegionR2 0.872 1.207 0.37228 0.76699
RegionR3 -0.064 1.207 1.00000 1.00000
RegionR4 2.229 1.207 1.00000 1.00000
RegionR5 4.372 1.207 0.00331 0.02539
RegionR6 2.94 1.207 0.07828 0.51874
RegionR7 -1.268 1.207 1.00000 1.00000
RegionR8 -3.028 1.207 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.859 1.207 1.00000 1.00000
RegenerationR2 2.224 1.207 0.00869 0.14867
RegenerationR3 2.25 1.207 0.10667 0.51628
RegenerationR4 1.594 1.207 0.12441 0.53651
RegenerationR5 0.132 1.207 0.89602 1.00000
RegenerationR6 1.116 1.207 0.42819 0.75694
RegenerationBL 2.392 1.207 0.27971 0.64050
RegenerationTP 2.21 1.207 0.45016 0.86739


Genes with expression patterns similar to MligTC455_34459

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34459 63 1.32 Mlig455_056794

Neo: -

Age: -

Region-enriched R5: 4.372/0.02539

 2 - - - 1.000 1.000 - Mlig455_056794 {REF} {Length: 2361} {NoTransDecoderORF} {RNA1509_44936} {RNA1310_1458.1, RNA1509_44936} {RNA1509_44936, RNA815_5252.1}
2. MligTC455_37574 30 0.63 Mlig455_032039

Neo: -

Age: -

 1.76 - - - 0.801 0.959 - Mlig455_032039 {REF} {Length: 3799} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=57.5]} {Smed: dd_Smed_v6_13661_0_2, dd_Smed_v6_13661_0_2, [RH, Score=204, Expect=4e-64]} {RNA1509_50200} {RNA1310_35365.2} {RNA815_39051}
3. MligTC455_25734 38 0.78 Mlig455_039452

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_039452 {REF} {Length: 1033} {NoTransDecoderORF} {RNA1509_32652} {RNA1310_131301} {RNA815_5359.1}
4. MligTC455_41115 193 4.01 Mlig455_039552, Mlig455_051356

Neo: -

Age: -

 0.976 - - - - 0.976 -

Mlig455_039552 {REF} {Length: 834} {NoTransDecoderORF} {RNA1310_134240}

Mlig455_051356 {REF} {Length: 1229} {NoTransDecoderORF} {RNA1509_8078} {RNA1310_134240} {RNA815_8663}
5. MligTC455_18602 116 2.42 Mlig455_003494

Neo: -

Age: -

 KCTD21 0.975 - - - - 0.975 - Mlig455_003494 {REF} {Length: 3275} {Pfam: BTB/POZ domain [PF02214.24, score=65.0]} {Human: ENSG00000188997, KCTD21, potassium channel tetramerization domain containing 21, [Score=88.6, Expect=3e-21]; ENSG00000183783, KCTD8, potassium channel tetramerization domain containing 8, [Score=87.8, Expect=7e-19]} {Mouse: ENSMUSG00000044952, Kctd21, potassium channel tetramerisation domain containing 21, [Score=87.8, Expect=5e-20]; ENSMUSG00000037653, Kctd8, potassium channel tetramerisation domain containing 8, [Score=85.9, Expect=2e-18]} {Dmel: FBgn0038839, Ktl, Kctd12-like, [Score=82.0, Expect=3e-18]} {Celegans: WBGene00014848, VM106R.1, [Score=77.4, Expect=4e-16]} {Smed: dd_Smed_v6_8654_0_1, dd_Smed_v6_8654_0_1, [Score=89.0, Expect=8e-21]} {RNA1310_21779.1} {RNA815_18356}
6. MligTC455_30755 8 0.16 Mlig455_014677

Neo: -

Age: Down-Up-Down

 APBA2 0.975 - - - - 0.975 - Mlig455_014677 {REF} {Length: 2306} {TRANSSPLICED} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=31.5]} {Human: ENSG00000276495, APBA2, amyloid beta precursor protein binding family A member 2, [Score=66.2, Expect=1e-10]; ENSG00000034053, APBA2, amyloid beta precursor protein binding family A member 2, [Score=66.2, Expect=1e-10]; ENSG00000107282, APBA1, amyloid beta precursor protein binding family A member 1, [Score=63.2, Expect=1e-09]} {Mouse: ENSMUSG00000030519, Apba2, amyloid beta (A4) precursor protein-binding, family A, member 2, [Score=62.8, Expect=9e-10]; ENSMUSG00000024897, Apba1, amyloid beta (A4) precursor protein binding, family A, member 1, [Score=62.4, Expect=1e-09]} {Dmel: FBgn0026313, X11L, [Score=75.1, Expect=1e-13]} {Celegans: WBGene00002999, lin-10, [Score=70.5, Expect=2e-12]} {Smed: dd_Smed_v6_2836_0_1, dd_Smed_v6_2836_0_1, [Score=129, Expect=1e-31]} {RNA1509_6664} {RNA1310_14590} {RNA815_2382}
7. MligTC455_54332 77 1.61 Mlig455_067675

Neo: -

Age: Up-Down-Down

 BMP1 0.974 - - - - 0.974 - Mlig455_067675 {REF} {Length: 4231} {Pfam: CUB domain [PF00431.22, score=166.3]} {Human: ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=75.5, Expect=3e-13]} {Mouse: ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=79.3, Expect=2e-14]} {Dmel: FBgn0261262, CG42613, [Score=90.1, Expect=4e-18]} {Celegans: WBGene00004944, sol-1, Suppressor of lurcher protein 1, [RH, Score=75.5, Expect=9e-14]} {Smed: dd_Smed_v6_19493_0_1, dd_Smed_v6_19493_0_1, [Score=258, Expect=1e-73]} {RNA1509_49729} {RNA1310_14031} {RNA815_23434}
8. MligTC455_38551 529 11.02 Mlig455_036301, Mlig455_036336

Neo: -

Age: -

Region-enriched R7: 1.577/0.04603

 0.973 - - - 0.973 - -

Mlig455_036301 {REF} {Length: 4016} {Smed: dd_Smed_v6_5715_0_1, dd_Smed_v6_5715_0_1, [Score=42.7, Expect=1e-05]} {RNA1509_49824} {RNA1310_24515.1, RNA1509_49824} {RNA1509_49824, RNA815_20644}

Mlig455_036336 {REF} {Length: 1215} {Smed: dd_Smed_v6_13174_0_1, dd_Smed_v6_13174_0_1, [Score=49.7, Expect=2e-07]} {RNA1509_49824} {RNA1310_24515.2} {RNA815_20644}
9. MligTC455_09619 39 0.82 Mlig455_024279

Neo: -

Age: Up-Up-Down

 0.968 - - - - 0.968 - Mlig455_024279 {REF} {Length: 1788} {TRANSSPLICED} {Pfam: Basic region leucine zipper [PF07716.17, score=21.3]} {RNA1509_58091} {RNA1310_22874, RNA1509_58091} {RNA1509_58091, RNA815_11109}
10. MligTC455_18452 224 4.66 Mlig455_057585

Neo: -

Age: -

 SLC25A19 0.968 - - - - 0.968 - Mlig455_057585 {REF} {Length: 2123} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=175.6]; Keratin, high sulfur B2 protein [PF13885.8, score=25.5]} {Human: ENSG00000125454, SLC25A19, solute carrier family 25 member 19, [RH, Score=217, Expect=8e-66]} {Mouse: ENSMUSG00000020744, Slc25a19, solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19, [RH, Score=209, Expect=5e-63]} {Dmel: FBgn0037852, Tpc1, Thiamine pyrophosphate carrier protein 1, [Score=157, Expect=1e-43]} {Celegans: WBGene00016588, hpo-12, [RH, Score=179, Expect=4e-52]} {Smed: dd_Smed_v6_8180_0_1, dd_Smed_v6_8180_0_1, [RH, Score=208, Expect=4e-63]} {RNA1509_10133} {RNA1310_17797} {RNA815_5564}
11. MligTC455_37748 123 2.56 Mlig455_012702, Mlig455_033010

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_012702 {REF} {Length: 2807} {Smed: dd_Smed_v6_32414_0_1, dd_Smed_v6_32414_0_1, [Score=87.0, Expect=4e-18]} {RNA1509_52343} {RNA1310_5679} {RNA815_10252}

Mlig455_033010 {REF} {Length: 3464} {Smed: dd_Smed_v6_13730_0_1, dd_Smed_v6_13730_0_1, [Score=174, Expect=4e-45]} {RNA1509_52343} {RNA1310_5679} {RNA815_10252}
12. MligTC455_55680 10 0.21 Mlig455_008508

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_008508 {REF} {Length: 462} {NoTransDecoderORF}
13. MligTC455_11204 19 0.4 Mlig455_001953

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_001953 {REF} {Length: 1995} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.0]} {Dmel: FBgn0052792, ppk8, pickpocket 8, [Score=51.2, Expect=2e-06]} {Smed: dd_Smed_v6_19599_0_1, dd_Smed_v6_19599_0_1, [Score=120, Expect=1e-28]} {RNA1310_21301.2} {RNA815_18004}
14. MligTC455_50304 17 0.35 Mlig455_067422

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_067422 {REF} {Length: 751} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51606} {RNA1310_82384} {RNA815_44872}
15. MligTC455_22977 22 0.47 Mlig455_009569

Neo: -

Age: -

 CFAP43 0.962 - - - - 0.962 - Mlig455_009569 {REF} {Length: 5659} {Human: ENSG00000197748, CFAP43, cilia and flagella associated protein 43, [Score=502, Expect=1e-148]} {Mouse: ENSMUSG00000044948, Cfap43, cilia and flagella associated protein 43, [Score=512, Expect=2e-152]} {Dmel: FBgn0036348, CG17687, [Score=101, Expect=4e-21]} {Smed: dd_Smed_v6_10271_0_2, dd_Smed_v6_10271_0_2, [Score=665, Expect=0.0]} {RNA1509_53795} {RNA1310_1696} {RNA815_196.1}
16. MligTC455_28356 50 1.03 Mlig455_037254

Neo: -

Age: Up-Down-Down

 0.962 - - - - 0.962 - Mlig455_037254 {REF} {Length: 1961} {RNA1509_11960} {RNA1310_11061} {RNA815_18873}
17. MligTC455_34488 72 1.5 Mlig455_051688

Neo: -

Age: -

 DAG1 0.961 - - - - 0.961 - Mlig455_051688 {REF} {Length: 4571} {TRANSSPLICED} {Pfam: Dystroglycan (Dystrophin-associated glycoprotein 1) [PF05454.13, score=47.3]; Alpha-Dystroglycan N-terminal domain 2 [PF18424.3, score=31.6]} {Human: ENSG00000173402, DAG1, dystroglycan 1, [RH, Score=61.2, Expect=1e-08]} {Mouse: ENSMUSG00000039952, Dag1, dystroglycan 1, [RH, Score=63.5, Expect=2e-09]} {Smed: dd_Smed_v6_11814_0_1, dd_Smed_v6_11814_0_1, [RH, Score=82.8, Expect=8e-16]} {RNA1509_57075} {RNA1310_1596.1, RNA1509_57075} {RNA1509_57075, RNA815_7113}
18. MligTC455_12914 32 0.66 Mlig455_026496

Neo: -

Age: -

 ZNF521 0.956 - - - - 0.956 - Mlig455_026496 {REF} {Length: 3383} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.4]; C2H2-type zinc finger [PF13894.8, score=52.8]; Zinc-finger of C2H2 type [PF12874.9, score=31.6]; Zinc-finger double domain [PF13465.8, score=19.7]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.2]; C2H2-type zinc finger [PF13912.8, score=18.7]} {Human: ENSG00000198795, ZNF521, zinc finger protein 521, [Score=77.0, Expect=1e-13]} {Mouse: ENSMUSG00000024420, Zfp521, zinc finger protein 521, [Score=75.5, Expect=3e-13]} {Dmel: FBgn0036179, CG7368, [Score=72.4, Expect=1e-12]} {Celegans: WBGene00018567, F47E1.3, [Score=61.6, Expect=2e-09]} {Smed: dd_Smed_v6_7731_0_1, dd_Smed_v6_7731_0_1, [Score=58.5, Expect=1e-09]} {RNA1310_43017} {RNA815_23872}
19. MligTC455_18547 16 0.33 Mlig455_058297

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_058297 {REF} {Length: 647} {NoTransDecoderORF}
20. MligTC455_49094 59 1.22 Mlig455_065396

Neo: -

Age: -

 RERGL 0.955 - - - - 0.955 - Mlig455_065396 {REF} {Length: 1449} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=61.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=25.4]} {Human: ENSG00000111404, RERGL, RERG like, [Score=80.5, Expect=7e-18]; ENSG00000134533, RERG, RAS like estrogen regulated growth inhibitor, [Score=80.1, Expect=7e-18]} {Mouse: ENSMUSG00000092164, Rergl, RERG/RAS-like, [Score=84.7, Expect=1e-19]} {Dmel: FBgn0035711, CG8519, [Score=69.3, Expect=4e-14]} {Celegans: WBGene00004309, rap-3, RAP homolog (Vertebrate Rap GTPase family), [Score=59.3, Expect=1e-10]} {Smed: dd_Smed_v6_7273_0_1, dd_Smed_v6_7273_0_1, [Score=80.1, Expect=3e-18]} {RNA1509_41924} {RNA1310_34154} {RNA815_43516}
21. MligTC455_00421 18 0.38 Mlig455_015214, Mlig455_027173

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_015214 {REF} {Length: 694} {RNA1310_16130}

Mlig455_027173 {REF} {Length: 692} {RNA1310_16130}
22. MligTC455_02544 9 0.19 Mlig455_035271

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_035271 {REF} {Length: 1211} {NoTransDecoderORF} {RNA1509_2609} {RNA1310_34122.1} {RNA815_6796.2}
23. MligTC455_34721 210 4.37 Mlig455_019778

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.334

 NIM1K 0.954 - - - 0.954 - - Mlig455_019778 {REF} {Length: 3764} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=229.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=133.5]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=27.5]; Kinase-like [PF14531.8, score=25.4]} {Human: ENSG00000177453, NIM1K, NIM1 serine/threonine protein kinase, [RH, Score=453, Expect=3e-156]} {Mouse: ENSMUSG00000095930, Nim1k, NIM1 serine/threonine protein kinase, [RH, Score=452, Expect=8e-156]} {Dmel: FBgn0031299, CG4629, [RH, Score=295, Expect=5e-93]} {Celegans: WBGene00009867, F49C5.4, [RH, Score=355, Expect=2e-117]} {Smed: dd_Smed_v6_15794_0_1, dd_Smed_v6_15794_0_1, [RH, Score=410, Expect=4e-139]} {RNA1509_26319, RNA1509_53016} {RNA1310_16082.1, RNA1509_26319, RNA1509_53016} {RNA1509_26319, RNA1509_53016, RNA815_4664.1}
24. MligTC455_47663 596 12.43 Mlig455_021670, Mlig455_021718

Neo: -

Age: -

 PCDH11X 0.952 - - - - 0.952 -

Mlig455_021670 {REF} {Length: 3779} {Pfam: Cadherin domain [PF00028.19, score=254.9]; Cadherin-like [PF08266.14, score=48.8]; Cadherin-like [PF16184.7, score=19.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=2e-70]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=259, Expect=2e-70]; ENSG00000156453, PCDH1, protocadherin 1, [Score=251, Expect=2e-68]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=254, Expect=2e-69]} {Dmel: FBgn0284247, ds, dachsous, [Score=229, Expect=1e-60]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=157, Expect=3e-38]} {Smed: dd_Smed_v6_11605_0_1, dd_Smed_v6_11605_0_1, [RH, Score=333, Expect=6e-97]} {RNA1509_22718} {RNA1310_3245} {RNA815_7122}

Mlig455_021718 {REF} {Length: 3958} {Pfam: Cadherin domain [PF00028.19, score=259.1]; Cadherin-like [PF08266.14, score=51.8]; Cadherin-like [PF16184.7, score=21.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=1e-71]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=258, Expect=5e-72]; ENSG00000156453, PCDH1, protocadherin 1, [Score=251, Expect=7e-70]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=256, Expect=1e-71]} {Dmel: FBgn0284247, ds, dachsous, [Score=231, Expect=1e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=155, Expect=2e-38]} {Smed: dd_Smed_v6_13155_0_1, dd_Smed_v6_13155_0_1, [RH, Score=318, Expect=1e-94]} {RNA1509_22718} {RNA1310_3245} {RNA815_7122}
25. MligTC455_49815 254 5.29 Mlig455_034449, Mlig455_066215

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.653

 0.952 - - - 0.952 - -

Mlig455_034449 {REF} {Length: 1029} {RNA1509_39560} {RNA1310_52222.2} {RNA815_27937}

Mlig455_066215 {REF} {Length: 1283} {RNA1509_39560} {RNA1310_52222.2, RNA1509_39560} {RNA1509_39560, RNA815_27937}
26. MligTC455_21550 39 0.82 Mlig455_039894

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_039894 {REF} {Length: 1106} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30577} {RNA1310_80313} {RNA815_55453}
27. MligTC455_45708 13 0.27 Mlig455_009331

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_009331 {REF} {Length: 3871}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA