M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34493

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34493 34 0.70 Mlig455_027249

Neo: -

Age: -

 Mlig455_027249 {REF} {Length: 198} {NoTransDecoderORF} {RNA1509_58452} {RNA1310_61663} {RNA815_17924.3}

Cumulative graph for MligTC455_34493

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.929 0.982 1.00000 1.00000
RegionR2 3.585 0.982 0.04421 0.24703
RegionR3 0.3 0.982 0.86133 1.00000
RegionR4 -4.695 0.982 1.00000 1.00000
RegionR5 1.084 0.982 0.73619 1.00000
RegionR6 1.901 0.982 0.34373 0.93066
RegionR7 3.891 0.982 0.02387 0.28897
RegionR8 -0.137 0.982 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.166 0.982 0.99987 1.00000
RegenerationR2 -1.968 0.982 0.11516 0.52777
RegenerationR3 1.138 0.982 0.76097 0.96789
RegenerationR4 2.382 0.982 0.56287 0.89825
RegenerationR5 -1.953 0.982 0.12645 0.53020
RegenerationR6 -3.188 0.982 0.05998 0.30805
RegenerationBL -0.753 0.982 0.99107 1.00000
RegenerationTP 2.254 0.982 0.50946 0.90665


Genes with expression patterns similar to MligTC455_34493

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34493 34 0.7 Mlig455_027249

Neo: -

Age: -

 3 1.000 1.000 - - 1.000 - Mlig455_027249 {REF} {Length: 198} {NoTransDecoderORF} {RNA1509_58452} {RNA1310_61663} {RNA815_17924.3}
2. MligTC455_34494 31 0.64 Mlig455_027256

Neo: -

Age: -

Region-enriched R7: 4.825/0.03618

 2.807 0.907 0.964 - - 0.936 - Mlig455_027256 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_8739} {RNA1310_5385.2} {RNA815_13537}
3. MligTC455_50657 187 3.9 Mlig455_064736

Neo: -

Age: Down-Up-Down

 SYT17 0.978 - - - - 0.978 - Mlig455_064736 {REF} {Length: 2460} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=51.5]} {Human: ENSG00000103528, SYT17, synaptotagmin 17, [Score=98.2, Expect=1e-21]; ENSG00000143858, SYT2, synaptotagmin 2, [Score=97.8, Expect=1e-21]; ENSG00000170743, SYT9, synaptotagmin 9, [Score=97.1, Expect=3e-21]; ENSG00000134207, SYT6, synaptotagmin 6, [Score=95.5, Expect=7e-21]; ENSG00000067715, SYT1, synaptotagmin 1, [Score=94.4, Expect=2e-20]; ENSG00000213023, SYT3, synaptotagmin 3, [Score=94.0, Expect=4e-20]; ENSG00000011347, SYT7, synaptotagmin 7, [Score=93.6, Expect=2e-20]} {Mouse: ENSMUSG00000026452, Syt2, synaptotagmin II, [Score=98.2, Expect=6e-22]; ENSMUSG00000027849, Syt6, synaptotagmin VI, [Score=97.8, Expect=8e-22]; ENSMUSG00000058420, Syt17, synaptotagmin XVII, [Score=97.8, Expect=1e-21]; ENSMUSG00000062542, Syt9, synaptotagmin IX, [Score=96.7, Expect=3e-21]; ENSMUSG00000030731, Syt3, synaptotagmin III, [Score=94.7, Expect=1e-20]; ENSMUSG00000035864, Syt1, synaptotagmin I, [Score=94.0, Expect=1e-20]; ENSMUSG00000024261, Syt4, synaptotagmin IV, [Score=94.0, Expect=1e-20]} {Dmel: FBgn0004242, Syt1, Synaptotagmin 1, [Score=98.2, Expect=4e-22]} {Celegans: WBGene00004921, snt-1, Synaptotagmin-1, [Score=92.8, Expect=2e-20]} {Smed: dd_Smed_v6_4222_0_1, dd_Smed_v6_4222_0_1, [Score=97.8, Expect=2e-22]} {RNA1310_19969.1} {RNA815_14010}
4. MligTC455_36837 9734 202.79 Mlig455_053790

Neo: -

Age: logFC(26M/2M)=0.399

 RPLP1 0.971 - - - - 0.971 - Mlig455_053790 {REF} {Length: 520} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=89.2]} {Human: ENSG00000137818, RPLP1, ribosomal protein lateral stalk subunit P1, [RH, Score=85.1, Expect=5e-22]} {Mouse: ENSMUSG00000007892, Rplp1, ribosomal protein, large, P1, [RH, Score=84.0, Expect=9e-22]; ENSMUSG00000060019, Gm10073, predicted pseudogene 10073, [RH, Score=80.9, Expect=1e-20]} {Dmel: FBgn0002593, RpLP1, Ribosomal protein LP1, [Score=101, Expect=7e-29]} {Celegans: WBGene00004409, rla-1, 60S acidic ribosomal protein P1, [Score=84.7, Expect=2e-22]} {Smed: dd_Smed_v6_224_0_1, dd_Smed_v6_224_0_1, [Score=67.4, Expect=8e-16]} {RNA1509_7253} {RNA1310_72886} {RNA815_36874.1}
5. MligTC455_12601 88 1.84 Mlig455_053883, Mlig455_055408

Neo: -

Age: Down-Up-Up

 0.962 - - - - 0.962 -

Mlig455_053883 {REF} {Length: 409} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_74777.1} {RNA815_45586}

Mlig455_055408 {REF} {Length: 482} {NoTransDecoderORF} {RNA1310_74777.1} {RNA815_45586}
6. MligTC455_29661 176 3.67 Mlig455_032724

Neo: -

Age: -

Region-enriched R7: 7.801/0.00000
Region-enriched R8: 7.558/0.00011

 0.962 - - - - 0.962 - Mlig455_032724 {REF} {Length: 1363} {Pfam: Metallo-peptidase family M12 [PF13688.8, score=42.7]; Metallo-peptidase family M12B Reprolysin-like [PF13574.8, score=41.8]; Metallo-peptidase family M12B Reprolysin-like [PF13582.8, score=39.3]; Metallo-peptidase family M12B Reprolysin-like [PF13583.8, score=35.2]; Reprolysin (M12B) family zinc metalloprotease [PF01421.21, score=28.3]} {RNA1509_33687} {RNA1310_13258} {RNA815_5404.1}
7. MligTC455_14663 41 0.84 Mlig455_015553

Neo: -

Age: -

 0.959 - 0.959 - - - - Mlig455_015553 {REF} {Length: 2076} {RNA1509_60096} {RNA1310_37961} {RNA815_24102}
8. MligTC455_18934 23 0.47 Mlig455_012122, Mlig455_012314, Mlig455_015441, Mlig455_051165

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_012122 {REF} {Length: 2894} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=247.3]; Integrase core domain [PF00665.28, score=20.7]; Integrase core domain [PF13683.8, score=19.0]} {RNA1509_28127} {RNA1310_7509.2} {RNA815_2484.1}

Mlig455_012314 {REF} {Length: 298} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=258.0]; Integrase core domain [PF00665.28, score=20.3]; Integrase core domain [PF13683.8, score=19.0]} {RNA1509_44213} {RNA1310_12401} {RNA815_2484.1}

Mlig455_015441 {REF} {Length: 2669} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=258.0]; Integrase core domain [PF00665.28, score=20.3]; Integrase core domain [PF13683.8, score=19.0]} {RNA1509_28127} {RNA1310_7509.2} {RNA815_2484.1}

Mlig455_051165 {REF} {Length: 559} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=112.3]} {RNA1509_44213} {RNA1310_12401} {RNA815_2484.1}
9. MligTC455_42909 58 1.21 Mlig455_061247

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_061247 {REF} {Length: 552} {NoTransDecoderORF} {RNA1310_70139} {RNA815_38813}
10. MligTC455_06815 70 1.46 Mlig455_026013, Mlig455_070440

Neo: -

Age: -

Region-enriched R8: 5.840/0.01787

 0.954 - - - - 0.954 -

Mlig455_026013 {REF} {Length: 978} {NoTransDecoderORF} {RNA1310_100888} {RNA815_20773}

Mlig455_070440 {REF} {Length: 978} {NoTransDecoderORF} {RNA1310_100888} {RNA815_20773}
11. MligTC455_34960 4038 84.12 Mlig455_049318

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.316

 RPS11 0.954 - - - - 0.954 - Mlig455_049318 {REF} {Length: 629} {TRANSSPLICED} {Pfam: Ribosomal protein S17 [PF00366.22, score=96.7]; Ribosomal_S17 N-terminal [PF16205.7, score=86.3]} {Human: ENSG00000142534, RPS11, ribosomal protein S11, [RH, Score=223, Expect=3e-75]} {Mouse: ENSMUSG00000003429, Rps11, ribosomal protein S11, [RH, Score=223, Expect=2e-75]} {Dmel: FBgn0033699, RpS11, Ribosomal protein S11, [RH, Score=207, Expect=2e-69]} {Celegans: WBGene00004480, rps-11, Ribosomal Protein, Small subunit, [RH, Score=191, Expect=4e-63]} {Smed: dd_Smed_v6_227_0_1, dd_Smed_v6_227_0_1, [RH, Score=204, Expect=2e-68]} {RNA1509_4800} {RNA1310_56042, RNA1509_4800} {RNA1509_4800, RNA815_25311.1}
12. MligTC455_27779 20 0.42 Mlig455_014793

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.188

 0.953 - - - - 0.953 - Mlig455_014793 {REF} {Length: 2420} {Pfam: Glycine rich protein [PF12810.9, score=19.0]; PAN domain [PF00024.28, score=18.5]} {RNA1509_54307} {RNA1310_20162.1} {RNA815_40957}
13. MligTC455_08232 26 0.53 Mlig455_026726

Neo: -

Age: -

Region-enriched R2: 7.121/0.04252

 SLC1A2 0.952 - - - - 0.952 - Mlig455_026726 {REF} {Length: 2126} {Pfam: Sodium:dicarboxylate symporter family [PF00375.20, score=384.3]} {Human: ENSG00000110436, SLC1A2, solute carrier family 1 member 2, [Score=449, Expect=6e-152]} {Mouse: ENSMUSG00000005089, Slc1a2, solute carrier family 1 (glial high affinity glutamate transporter), member 2, [Score=459, Expect=3e-156]} {Dmel: FBgn0026439, Eaat1, Excitatory amino acid transporter 1, [Score=341, Expect=9e-112]} {Celegans: WBGene00001620, glt-1, Excitatory amino acid transporter, [Score=466, Expect=2e-160]} {Smed: dd_Smed_v6_1106_0_1, dd_Smed_v6_1106_0_1, [Score=527, Expect=0.0]} {RNA1310_29919} {RNA815_23437}
14. MligTC455_13760 106 2.22 Mlig455_002596

Neo: -

Age: Up-Up-Down

 0.952 - - - - 0.952 - Mlig455_002596 {REF} {Length: 1396} {RNA1310_31120} {RNA815_31550}
15. MligTC455_29936 241 5.01 Mlig455_027834, Mlig455_032110, Mlig455_042040, Mlig455_053160, Mlig455_060013, Mlig455_068652

Neo: -

Age: -

Region-enriched R4: 2.807/0.01859

 0.952 - - - - 0.952 -

Mlig455_027834 {REF} {Length: 1462} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_032110 {REF} {Length: 440} {RNA1509_22369} {RNA1310_28603.1} {RNA815_3258.1}

Mlig455_042040 {REF} {Length: 1211} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_053160 {REF} {Length: 1298} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_060013 {REF} {Length: 1463} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_068652 {REF} {Length: 1496} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
16. MligTC455_07090 36 0.74 Mlig455_036358

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_036358 {REF} {Length: 626} {NoTransDecoderORF} {RNA1310_49246}
17. MligTC455_52439 266 5.53 Mlig455_065368

Neo: -

Age: logFC(26M/2M)=-0.267

 0.951 - - - - 0.951 - Mlig455_065368 {REF} {Length: 2661} {TRANSSPLICED} {RNA1509_22620} {RNA1310_9393.1, RNA1509_22620} {RNA1509_22620, RNA815_16638}
18. MligTC455_15516 107 2.23 Mlig455_052960

Neo: Germline

Age: Down-Down-Up

Region-specific R4: 5.444

Region-enriched R4: 3.219/0.00440

 0.95 - - - - 0.950 - Mlig455_052960 {REF} {Length: 931} {RNA1509_6281} {RNA1310_42233} {RNA815_26722}
19. MligTC455_36961 50 1.05 Mlig455_031335

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_031335 {REF} {Length: 519} {RNA1509_53976} {RNA1310_63130} {RNA815_33431}
20. MligTC455_49120 287 5.98 Mlig455_057384, Mlig455_057406

Neo: -

Age: Up-Down-Down

 0.95 - - - - 0.950 -

Mlig455_057384 {REF} {Length: 1946} {RNA1509_39046} {RNA1310_36430} {RNA815_48373}

Mlig455_057406 {REF} {Length: 2009} {RNA1509_39046} {RNA1310_36430} {RNA815_48373}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA