TomoSeq data search

Data search

Results for MligTC455_34572

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_34572	115	2.39	Mlig455_043073, Mlig455_053935, Mlig455_066304, Mlig455_068239, Mlig455_070555	Neo: - Age: Up-Down-Up	CAMKV, RTL1	Mlig455_043073 {REF} {Length: 1289} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=44.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=40.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=82.8, Expect=4e-18]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=150, Expect=3e-42]} {RNA1509_3061} {RNA1310_189.1} {RNA815_86.1} Mlig455_053935 {REF} {Length: 791} {Human: ENSG00000164076, CAMKV, CaM kinase like vesicle associated, [Score=48.1, Expect=8e-06]} {Mouse: ENSMUSG00000032936, Camkv, CaM kinase-like vesicle-associated, [Score=48.1, Expect=5e-06]} {RNA1509_53656} {RNA1310_189.1} {RNA815_86.1} Mlig455_066304 {REF} {Length: 10800} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1} Mlig455_068239 {REF} {Length: 2058} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.4]} {Smed: dd_Smed_v6_24304_0_1, dd_Smed_v6_24304_0_1, [Score=43.9, Expect=2e-07]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1} Mlig455_070555 {REF} {Length: 455} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_34572

115

2.39

Mlig455_043073, Mlig455_053935, Mlig455_066304, Mlig455_068239, Mlig455_070555

Neo: -

Age: Up-Down-Up

CAMKV, RTL1

Mlig455_043073 {REF} {Length: 1289} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=44.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=40.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=82.8, Expect=4e-18]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=150, Expect=3e-42]} {RNA1509_3061} {RNA1310_189.1} {RNA815_86.1}

Mlig455_053935 {REF} {Length: 791} {Human: ENSG00000164076, CAMKV, CaM kinase like vesicle associated, [Score=48.1, Expect=8e-06]} {Mouse: ENSMUSG00000032936, Camkv, CaM kinase-like vesicle-associated, [Score=48.1, Expect=5e-06]} {RNA1509_53656} {RNA1310_189.1} {RNA815_86.1}

Mlig455_066304 {REF} {Length: 10800} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1}

Mlig455_068239 {REF} {Length: 2058} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.4]} {Smed: dd_Smed_v6_24304_0_1, dd_Smed_v6_24304_0_1, [Score=43.9, Expect=2e-07]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1}

Mlig455_070555 {REF} {Length: 455} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1}

Cumulative graph for MligTC455_34572

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.997	2.156	0.59488	1.00000
RegionR2	0.362	2.156	0.72341	1.00000
RegionR3	0.62	2.156	0.55967	1.00000
RegionR4	1.971	2.156	0.10046	0.30823
RegionR5	0.28	2.156	0.75216	1.00000
RegionR6	-0.199	2.156	0.91257	1.00000
RegionR7	0.31	2.156	0.77328	1.00000
RegionR8	-0.346	2.156	0.94970	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.502	2.156	0.99984	1.00000
RegenerationR2	0.19	2.156	0.75910	0.97624
RegenerationR3	-0.077	2.156	0.90611	1.00000
RegenerationR4	-0.034	2.156	0.95750	1.00000
RegenerationR5	0.307	2.156	0.67547	0.94306
RegenerationR6	0.629	2.156	0.47183	0.78580
RegenerationBL	1.494	2.156	0.15126	0.46466
RegenerationTP	0.813	2.156	0.56233	0.93976

Genes with expression patterns similar to MligTC455_34572

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_34572	115	2.39	Mlig455_043073, Mlig455_053935, Mlig455_066304, Mlig455_068239, Mlig455_070555	Neo: - Age: Up-Down-Up	CAMKV, RTL1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_043073 {REF} {Length: 1289} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=44.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=40.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=82.8, Expect=4e-18]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=66.2, Expect=1e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=150, Expect=3e-42]} {RNA1509_3061} {RNA1310_189.1} {RNA815_86.1} Mlig455_053935 {REF} {Length: 791} {Human: ENSG00000164076, CAMKV, CaM kinase like vesicle associated, [Score=48.1, Expect=8e-06]} {Mouse: ENSMUSG00000032936, Camkv, CaM kinase-like vesicle-associated, [Score=48.1, Expect=5e-06]} {RNA1509_53656} {RNA1310_189.1} {RNA815_86.1} Mlig455_066304 {REF} {Length: 10800} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1} Mlig455_068239 {REF} {Length: 2058} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.4]} {Smed: dd_Smed_v6_24304_0_1, dd_Smed_v6_24304_0_1, [Score=43.9, Expect=2e-07]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1} Mlig455_070555 {REF} {Length: 455} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.4]; Aspartyl protease [PF09668.12, score=26.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.2]; Aspartyl protease [PF13650.8, score=23.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=21.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=105, Expect=5e-22]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=313, Expect=8e-94]} {RNA1509_3061} {RNA1310_336.1} {RNA815_86.1}
2.	MligTC455_31047	265	5.53	Mlig455_016720	Neo: - Age: -		1.849	-	-	0.894	-	0.955	-	Mlig455_016720 {REF} {Length: 449} {RNA1509_13348} {RNA1310_46678} {RNA815_21464}
3.	MligTC455_25665	102	2.12	Mlig455_004753	Neo: - Age: logFC(26M/2M)=1.462	ANKHD1-EIF4EBP3	1.815	-	-	-	-	0.848	0.967	Mlig455_004753 {REF} {Length: 3594} {Pfam: Protein kinase domain [PF00069.27, score=187.3]; Ankyrin repeats (3 copies) [PF12796.9, score=151.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.6]; Ankyrin repeats (many copies) [PF13637.8, score=91.2]; Ankyrin repeat [PF13606.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.9]; Ankyrin repeat [PF00023.32, score=82.4]; ABC1 atypical kinase-like domain [PF03109.18, score=20.0]} {Human: ENSG00000254996, ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough, [Score=133, Expect=1e-30]; ENSG00000131503, ANKHD1, ankyrin repeat and KH domain containing 1, [Score=133, Expect=9e-31]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=132, Expect=2e-30]; ENSG00000197168, NEK5, NIMA related kinase 5, [Score=128, Expect=2e-29]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=134, Expect=3e-31]; ENSMUSG00000024483, Ankhd1, ankyrin repeat and KH domain containing 1, [Score=130, Expect=7e-30]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=132, Expect=1e-30]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=119, Expect=7e-27]} {Smed: dd_Smed_v6_11663_0_4, dd_Smed_v6_11663_0_4, [Score=144, Expect=2e-35]} {RNA1509_16775} {RNA1310_7082} {RNA815_556}
4.	MligTC455_23570	81	1.68	Mlig455_013090	Neo: - Age: Up-Down-Down	TIAM2	1.729	0.759	-	-	-	0.970	-	Mlig455_013090 {REF} {Length: 5714} {Pfam: RhoGEF domain [PF00621.22, score=80.6]; PH domain [PF00169.31, score=52.0]; T-lymphoma invasion and metastasis CC-Ex domain [PF18385.3, score=44.0]; Pleckstrin homology domain [PF15410.8, score=39.2]; PDZ domain [PF17820.3, score=30.4]; PDZ domain [PF00595.26, score=22.8]} {Human: ENSG00000146426, TIAM2, T cell lymphoma invasion and metastasis 2, [Score=246, Expect=2e-65]; ENSG00000156299, TIAM1, T cell lymphoma invasion and metastasis 1, [Score=242, Expect=5e-64]} {Mouse: ENSMUSG00000023800, Tiam2, T cell lymphoma invasion and metastasis 2, [Score=245, Expect=6e-65]; ENSMUSG00000002489, Tiam1, T cell lymphoma invasion and metastasis 1, [Score=242, Expect=1e-65]} {Dmel: FBgn0085447, sif, still life, [Score=258, Expect=9e-69]} {RNA1509_26471} {RNA1310_2308.1} {RNA815_4637}
5.	MligTC455_33161	167	3.48	Mlig455_049870	Neo: - Age: -		0.976	-	-	0.976	-	-	-	Mlig455_049870 {REF} {Length: 2752} {TRANSSPLICED} {Pfam: ADP-specific Phosphofructokinase/Glucokinase conserved region [PF04587.17, score=102.8]} {Mouse: ENSMUSG00000025236, Adpgk, ADP-dependent glucokinase, [Score=58.2, Expect=1e-08]} {Dmel: FBgn0036402, CG6650, [Score=73.9, Expect=1e-13]} {Celegans: WBGene00016810, C50D2.7, Probable ADP-dependent glucokinase, [Score=62.8, Expect=3e-10]} {Smed: dd_Smed_v6_5068_0_1, dd_Smed_v6_5068_0_1, [Score=142, Expect=1e-36]} {RNA1509_32703} {RNA1310_15025, RNA1509_32703} {RNA1509_32703, RNA815_16306}
6.	MligTC455_45007	83	1.74	Mlig455_000143	Neo: Irradiation Age: -	FANK1	0.97	-	-	-	-	-	0.970	Mlig455_000143 {REF} {Length: 1149} {Pfam: Ankyrin repeats (many copies) [PF13857.8, score=32.3]; Ankyrin repeats (3 copies) [PF12796.9, score=29.1]; Ankyrin repeats (many copies) [PF13637.8, score=28.5]; Ankyrin repeat [PF13606.8, score=25.9]} {Human: ENSG00000203780, FANK1, fibronectin type III and ankyrin repeat domains 1, [Score=46.6, Expect=2e-06]; ENSG00000115239, ASB3, ankyrin repeat and SOCS box containing 3, [Score=44.7, Expect=1e-05]; ENSG00000151150, ANK3, ankyrin 3, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=49.7, Expect=2e-07]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=47.4, Expect=9e-07]} {Smed: dd_Smed_v6_2366_0_1, dd_Smed_v6_2366_0_1, [Score=43.5, Expect=9e-06]} {RNA1509_47054} {RNA1310_54258, RNA1509_47054} {RNA1509_47054, RNA815_50469}
7.	MligTC455_41402	82	1.72	Mlig455_035255	Neo: - Age: Down-Up-Down	BSG	0.955	-	-	0.955	-	-	-	Mlig455_035255 {REF} {Length: 1671} {Pfam: Immunoglobulin domain [PF13927.8, score=36.8]; Immunoglobulin domain [PF00047.27, score=33.5]; Immunoglobulin I-set domain [PF07679.18, score=27.5]; Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain [PF16681.7, score=21.9]} {Human: ENSG00000172270, BSG, basigin (Ok blood group), [Score=53.5, Expect=6e-08]} {RNA1509_26299} {RNA1310_20860, RNA1509_26299} {RNA1509_26299, RNA815_11415}
8.	MligTC455_11401	391	8.15	Mlig455_013270, Mlig455_013343	Neo: - Age: Up-Down-Up		0.954	-	-	-	-	-	0.954	Mlig455_013270 {REF} {Length: 2537} {Celegans: WBGene00003010, lin-24, [Score=71.6, Expect=7e-14]} {RNA1310_28391} {RNA815_8262} Mlig455_013343 {REF} {Length: 2282} {Celegans: WBGene00003010, lin-24, [Score=71.6, Expect=7e-14]} {RNA1310_28391} {RNA815_8262}
9.	MligTC455_54214	320	6.67	Mlig455_046794, Mlig455_069948	Neo: - Age: Down-Up-Down		0.954	-	-	-	-	-	0.954	Mlig455_046794 {REF} {Length: 3639} {TRANSSPLICED} {RNA1509_54074} {RNA1310_29489, RNA1509_54074} {RNA1509_54074, RNA815_22674} Mlig455_069948 {REF} {Length: 3566} {TRANSSPLICED} {RNA1509_54074} {RNA1310_29489} {RNA815_22674}