TomoSeq data search

Data search

Results for MligTC455_35293

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_35293	7275	151.56	Mlig455_045265, Mlig455_069184	Neo: - Age: -	RNF13	Mlig455_045265 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=2e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=149, Expect=7e-40]} {Celegans: WBGene00007666, C18B12.4, [Score=125, Expect=4e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.7, Expect=4e-16]} {RNA1509_5463} {RNA1310_16699} {RNA815_6639} Mlig455_069184 {REF} {Length: 1671} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=3e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=147, Expect=3e-39]} {Celegans: WBGene00007666, C18B12.4, [Score=126, Expect=2e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.3, Expect=4e-16]} {RNA1509_17947, RNA1509_42298, RNA1509_5463} {RNA1310_16699, RNA1509_17947, RNA1509_42298} {RNA1509_17947, RNA1509_42298, RNA815_6639}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35293

7275

151.56

Mlig455_045265, Mlig455_069184

Neo: -

Age: -

RNF13

Mlig455_045265 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=2e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=149, Expect=7e-40]} {Celegans: WBGene00007666, C18B12.4, [Score=125, Expect=4e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.7, Expect=4e-16]} {RNA1509_5463} {RNA1310_16699} {RNA815_6639}

Mlig455_069184 {REF} {Length: 1671} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=3e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=147, Expect=3e-39]} {Celegans: WBGene00007666, C18B12.4, [Score=126, Expect=2e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.3, Expect=4e-16]} {RNA1509_17947, RNA1509_42298, RNA1509_5463} {RNA1310_16699, RNA1509_17947, RNA1509_42298} {RNA1509_17947, RNA1509_42298, RNA815_6639}

Cumulative graph for MligTC455_35293

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.009	7.34	0.98490	1.00000
RegionR2	0.205	7.34	0.52600	0.89883
RegionR3	-0.176	7.34	0.54273	1.00000
RegionR4	0.502	7.34	0.10440	0.31650
RegionR5	-0.044	7.34	0.87288	1.00000
RegionR6	0.161	7.34	0.56249	1.00000
RegionR7	-0.147	7.34	0.61536	1.00000
RegionR8	-0.511	7.34	0.12242	0.64274

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-2.636	7.34	0.00026	0.09160
RegenerationR2	-0.082	7.34	0.81397	0.99411
RegenerationR3	-0.202	7.34	0.57270	0.89510
RegenerationR4	-1.24	7.34	0.00081	0.03054
RegenerationR5	-0.338	7.34	0.33856	0.75679
RegenerationR6	-0.605	7.34	0.09238	0.37823
RegenerationBL	-0.256	7.34	0.43256	0.80061
RegenerationTP	-0.159	7.34	0.65096	0.98933

Genes with expression patterns similar to MligTC455_35293

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35293	7275	151.56	Mlig455_045265, Mlig455_069184	Neo: - Age: -	RNF13	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_045265 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=2e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=149, Expect=7e-40]} {Celegans: WBGene00007666, C18B12.4, [Score=125, Expect=4e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.7, Expect=4e-16]} {RNA1509_5463} {RNA1310_16699} {RNA815_6639} Mlig455_069184 {REF} {Length: 1671} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=48.4]; RING-like zinc finger [PF17123.7, score=45.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.9]; RING-H2 zinc finger domain [PF12678.9, score=30.3]; PA domain [PF02225.24, score=29.2]; RING-type zinc-finger [PF13445.8, score=28.9]; zinc-RING finger domain [PF14634.8, score=28.9]; Prokaryotic RING finger family 4 [PF14447.8, score=24.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=168, Expect=4e-48]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=168, Expect=3e-48]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=147, Expect=3e-39]} {Celegans: WBGene00007666, C18B12.4, [Score=126, Expect=2e-32]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=79.3, Expect=4e-16]} {RNA1509_17947, RNA1509_42298, RNA1509_5463} {RNA1310_16699, RNA1509_17947, RNA1509_42298} {RNA1509_17947, RNA1509_42298, RNA815_6639}
2.	MligTC455_39678	1206	25.13	Mlig455_044223	Neo: - Age: -		1.759	-	-	-	-	0.959	0.800	Mlig455_044223 {REF} {Length: 2705} {TRANSSPLICED} {RNA1509_4626} {RNA1310_6681, RNA1509_4626} {RNA1509_4626, RNA815_2257}
3.	MligTC455_40542	602	12.53	Mlig455_069897	Neo: - Age: Up-Down-Up	UBE3C	0.963	-	-	-	-	0.963	-	Mlig455_069897 {REF} {Length: 4281} {TRANSSPLICED} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=262.5]} {Human: ENSG00000009335, UBE3C, ubiquitin protein ligase E3C, [RH, Score=365, Expect=9e-109]} {Mouse: ENSMUSG00000039000, Ube3c, ubiquitin protein ligase E3C, [RH, Score=363, Expect=3e-108]} {Dmel: FBgn0034989, CG3356, [RH, Score=352, Expect=4e-104]} {Celegans: WBGene00008429, etc-1, E3 ubiquitin-protein ligase etc-1, [RH, Score=254, Expect=2e-70]} {Smed: dd_Smed_v6_8915_0_1, dd_Smed_v6_8915_0_1, [RH, Score=319, Expect=9e-93]} {RNA1509_52489, RNA1509_7273} {RNA1310_2336, RNA1509_52489} {RNA1509_52489, RNA815_688.1}
4.	MligTC455_27505	273	5.69	Mlig455_047753	Neo: - Age: Down-Down-Up Region-enriched R4: 3.237/0.00326	CASP8	0.958	-	-	-	-	0.958	-	Mlig455_047753 {REF} {Length: 2872} {TRANSSPLICED} {Pfam: Caspase domain [PF00656.24, score=126.5]; Ankyrin repeats (3 copies) [PF12796.9, score=73.0]; Ankyrin repeat [PF13606.8, score=54.7]; Ankyrin repeats (many copies) [PF13637.8, score=52.6]; Ankyrin repeat [PF00023.32, score=48.6]; Ankyrin repeats (many copies) [PF13857.8, score=47.1]} {Human: ENSG00000064012, CASP8, caspase 8, [Score=132, Expect=4e-32]; ENSG00000164305, CASP3, caspase 3, [Score=128, Expect=1e-32]} {Mouse: ENSMUSG00000026029, Casp8, caspase 8, [Score=135, Expect=1e-33]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [Score=108, Expect=1e-25]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=115, Expect=3e-28]} {Smed: dd_Smed_v6_1167_0_1, dd_Smed_v6_1167_0_1, [Score=135, Expect=1e-35]} {RNA1509_27731} {RNA1310_10050} {RNA815_10088.1}