TomoSeq data search

Data search

Results for MligTC455_35328

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_35328	306	6.38	Mlig455_037168, Mlig455_058716	Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 1.666/0.01401	TAAR6	Mlig455_037168 {REF} {Length: 941} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.3]} {Human: ENSG00000146383, TAAR6, trace amine associated receptor 6, [Score=47.8, Expect=1e-05]} {Mouse: ENSMUSG00000096442, Taar8a, trace amine-associated receptor 8A, [Score=52.0, Expect=4e-07]; ENSMUSG00000100004, Taar8c, trace amine-associated receptor 8C, [Score=50.8, Expect=9e-07]; ENSMUSG00000100186, Taar8b, trace amine-associated receptor 8B, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_75851_0_1, dd_Smed_v6_75851_0_1, [Score=56.6, Expect=1e-09]} Mlig455_058716 {REF} {Length: 6449} {RNA1509_17677, RNA1509_60174} {RNA1310_2088.1, RNA1509_60174} {RNA1509_60174, RNA815_10955}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35328

306

6.38

Mlig455_037168, Mlig455_058716

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 1.666/0.01401

TAAR6

Mlig455_037168 {REF} {Length: 941} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.3]} {Human: ENSG00000146383, TAAR6, trace amine associated receptor 6, [Score=47.8, Expect=1e-05]} {Mouse: ENSMUSG00000096442, Taar8a, trace amine-associated receptor 8A, [Score=52.0, Expect=4e-07]; ENSMUSG00000100004, Taar8c, trace amine-associated receptor 8C, [Score=50.8, Expect=9e-07]; ENSMUSG00000100186, Taar8b, trace amine-associated receptor 8B, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_75851_0_1, dd_Smed_v6_75851_0_1, [Score=56.6, Expect=1e-09]}

Mlig455_058716 {REF} {Length: 6449} {RNA1509_17677, RNA1509_60174} {RNA1310_2088.1, RNA1509_60174} {RNA1509_60174, RNA815_10955}

Cumulative graph for MligTC455_35328

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.252	3.041	0.69790	1.00000
RegionR2	0.558	3.041	0.42173	0.81270
RegionR3	1.151	3.041	0.06850	0.46263
RegionR4	0.539	3.041	0.34859	0.66982
RegionR5	1.666	3.041	0.00150	0.01401
RegionR6	0.338	3.041	0.52602	1.00000
RegionR7	-5.961	3.041	0.00373	0.08951
RegionR8	1.458	3.041	0.12448	0.64799

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-6.107	3.041	0.20170	0.94225
RegenerationR2	0.449	3.041	0.40784	0.81846
RegenerationR3	0.16	3.041	0.76393	0.96916
RegenerationR4	0.016	3.041	0.97404	1.00000
RegenerationR5	0.078	3.041	0.86208	1.00000
RegenerationR6	1.435	3.041	0.01023	0.12492
RegenerationBL	2.131	3.041	0.05750	0.27813
RegenerationTP	2.375	3.041	0.13005	0.54280

Genes with expression patterns similar to MligTC455_35328

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35328	306	6.38	Mlig455_037168, Mlig455_058716	Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 1.666/0.01401	TAAR6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_037168 {REF} {Length: 941} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.3]} {Human: ENSG00000146383, TAAR6, trace amine associated receptor 6, [Score=47.8, Expect=1e-05]} {Mouse: ENSMUSG00000096442, Taar8a, trace amine-associated receptor 8A, [Score=52.0, Expect=4e-07]; ENSMUSG00000100004, Taar8c, trace amine-associated receptor 8C, [Score=50.8, Expect=9e-07]; ENSMUSG00000100186, Taar8b, trace amine-associated receptor 8B, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_75851_0_1, dd_Smed_v6_75851_0_1, [Score=56.6, Expect=1e-09]} Mlig455_058716 {REF} {Length: 6449} {RNA1509_17677, RNA1509_60174} {RNA1310_2088.1, RNA1509_60174} {RNA1509_60174, RNA815_10955}
2.	MligTC455_53596	145	3.03	Mlig455_049664, Mlig455_052832	Neo: - Age: -	PEX12	0.97	-	-	-	-	-	0.970	Mlig455_049664 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=81.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.9]; RING-type zinc-finger [PF13445.8, score=21.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.6]} {Human: ENSG00000108733, PEX12, peroxisomal biogenesis factor 12, [Score=103, Expect=3e-24]} {Mouse: ENSMUSG00000116064, LT629148.5, peroxisomal biosis factor 12, [Score=91.7, Expect=3e-20]; ENSMUSG00000116268, LT629154.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000116062, LT629151.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000018733, Pex12, peroxisomal biogenesis factor 12, [Score=90.5, Expect=6e-20]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=122, Expect=1e-31]} {Smed: dd_Smed_v6_8166_0_1, dd_Smed_v6_8166_0_1, [Score=110, Expect=2e-27]} {RNA1509_58179} {RNA1310_15136.2, RNA1509_58179} {RNA1509_58179, RNA815_6671} Mlig455_052832 {REF} {Length: 2179} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=82.2]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=69.7, Expect=3e-13]} {RNA1509_58179} {RNA1310_15136.2} {RNA815_6671}
3.	MligTC455_04064	58	1.21	Mlig455_032788	Neo: Germline Age: -		0.956	-	0.956	-	-	-	-	Mlig455_032788 {REF} {Length: 764} {NoTransDecoderORF} {RNA1310_95655}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_35328

306

6.38

Mlig455_037168, Mlig455_058716

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 1.666/0.01401

TAAR6

1.000

Mlig455_058716 {REF} {Length: 6449} {RNA1509_17677, RNA1509_60174} {RNA1310_2088.1, RNA1509_60174} {RNA1509_60174, RNA815_10955}

MligTC455_53596

145

3.03

Mlig455_049664, Mlig455_052832

Neo: -

Age: -

PEX12

0.97

0.970

Mlig455_049664 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=81.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.9]; RING-type zinc-finger [PF13445.8, score=21.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.6]} {Human: ENSG00000108733, PEX12, peroxisomal biogenesis factor 12, [Score=103, Expect=3e-24]} {Mouse: ENSMUSG00000116064, LT629148.5, peroxisomal biosis factor 12, [Score=91.7, Expect=3e-20]; ENSMUSG00000116268, LT629154.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000116062, LT629151.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000018733, Pex12, peroxisomal biogenesis factor 12, [Score=90.5, Expect=6e-20]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=122, Expect=1e-31]} {Smed: dd_Smed_v6_8166_0_1, dd_Smed_v6_8166_0_1, [Score=110, Expect=2e-27]} {RNA1509_58179} {RNA1310_15136.2, RNA1509_58179} {RNA1509_58179, RNA815_6671}

Mlig455_052832 {REF} {Length: 2179} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=82.2]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=69.7, Expect=3e-13]} {RNA1509_58179} {RNA1310_15136.2} {RNA815_6671}

MligTC455_04064

1.21

Mlig455_032788

Neo: Germline

Age: -

0.956

Mlig455_032788 {REF} {Length: 764} {NoTransDecoderORF} {RNA1310_95655}