TomoSeq data search

Data search

Results for MligTC455_53596

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53596

145

3.03

Mlig455_049664, Mlig455_052832

Neo: -

Age: -

PEX12

Mlig455_049664 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=81.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.9]; RING-type zinc-finger [PF13445.8, score=21.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.6]} {Human: ENSG00000108733, PEX12, peroxisomal biogenesis factor 12, [Score=103, Expect=3e-24]} {Mouse: ENSMUSG00000116064, LT629148.5, peroxisomal biosis factor 12, [Score=91.7, Expect=3e-20]; ENSMUSG00000116268, LT629154.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000116062, LT629151.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000018733, Pex12, peroxisomal biogenesis factor 12, [Score=90.5, Expect=6e-20]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=122, Expect=1e-31]} {Smed: dd_Smed_v6_8166_0_1, dd_Smed_v6_8166_0_1, [Score=110, Expect=2e-27]} {RNA1509_58179} {RNA1310_15136.2, RNA1509_58179} {RNA1509_58179, RNA815_6671}

Mlig455_052832 {REF} {Length: 2179} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=82.2]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=69.7, Expect=3e-13]} {RNA1509_58179} {RNA1310_15136.2} {RNA815_6671}

Cumulative graph for MligTC455_53596

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.152	2.443	0.52273	1.00000
RegionR2	0.559	2.443	0.55766	0.92089
RegionR3	0.291	2.443	0.65806	1.00000
RegionR4	0.617	2.443	0.50880	0.83495
RegionR5	1.434	2.443	0.06231	0.21909
RegionR6	1.331	2.443	0.12791	0.64832
RegionR7	0.551	2.443	0.56944	1.00000
RegionR8	-5.937	2.443	0.03960	0.39087

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.517	2.443	0.45503	1.00000
RegenerationR2	-0.504	2.443	0.56594	0.90107
RegenerationR3	0.457	2.443	0.61646	0.91549
RegenerationR4	-0.133	2.443	0.88700	1.00000
RegenerationR5	0.235	2.443	0.73844	0.96792
RegenerationR6	-0.499	2.443	0.57562	0.85483
RegenerationBL	-2.861	2.443	0.99996	1.00000
RegenerationTP	2.979	2.443	0.14925	0.57318

Genes with expression patterns similar to MligTC455_53596

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53596	145	3.03	Mlig455_049664, Mlig455_052832	Neo: - Age: -	PEX12	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_049664 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=81.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.9]; RING-type zinc-finger [PF13445.8, score=21.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.6]} {Human: ENSG00000108733, PEX12, peroxisomal biogenesis factor 12, [Score=103, Expect=3e-24]} {Mouse: ENSMUSG00000116064, LT629148.5, peroxisomal biosis factor 12, [Score=91.7, Expect=3e-20]; ENSMUSG00000116268, LT629154.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000116062, LT629151.3, peroxisomal biosis factor 12, [Score=90.9, Expect=5e-20]; ENSMUSG00000018733, Pex12, peroxisomal biogenesis factor 12, [Score=90.5, Expect=6e-20]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=122, Expect=1e-31]} {Smed: dd_Smed_v6_8166_0_1, dd_Smed_v6_8166_0_1, [Score=110, Expect=2e-27]} {RNA1509_58179} {RNA1310_15136.2, RNA1509_58179} {RNA1509_58179, RNA815_6671} Mlig455_052832 {REF} {Length: 2179} {TRANSSPLICED} {Pfam: Pex2 / Pex12 amino terminal region [PF04757.16, score=82.2]} {Celegans: WBGene00004197, prx-12, Putative peroxisome assembly protein 12, [Score=69.7, Expect=3e-13]} {RNA1509_58179} {RNA1310_15136.2} {RNA815_6671}
2.	MligTC455_44729	137	2.84	Mlig455_036479	Neo: Int S/G2/M Age: logFC(26M/2M)=0.298 Region-enriched R5: 1.952/0.00788	CABIN1	1.695	-	-	-	0.738	-	0.957	Mlig455_036479 {REF} {Length: 6283} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF14559.8, score=19.2]} {Human: ENSG00000099991, CABIN1, calcineurin binding protein 1, [RH, Score=181, Expect=8e-46]} {Mouse: ENSMUSG00000020196, Cabin1, calcineurin binding protein 1, [RH, Score=180, Expect=1e-45]} {Smed: dd_Smed_v6_8249_0_1, dd_Smed_v6_8249_0_1, [Score=213, Expect=9e-57]} {RNA1509_12600} {RNA1310_3875} {RNA815_16101}
3.	MligTC455_52054	151	3.14	Mlig455_042770	Neo: - Age: -	VPS26A	0.971	-	-	0.971	-	-	-	Mlig455_042770 {REF} {Length: 2459} {TRANSSPLICED} {Pfam: Vacuolar protein sorting-associated protein 26 [PF03643.17, score=418.5]} {Human: ENSG00000122958, VPS26A, VPS26, retromer complex component A, [RH, Score=450, Expect=2e-158]} {Mouse: ENSMUSG00000020078, Vps26a, VPS26 retromer complex component A, [RH, Score=448, Expect=7e-158]} {Dmel: FBgn0014411, Vps26, Vacuolar protein sorting 26, [RH, Score=444, Expect=2e-154]} {Celegans: WBGene00006931, vps-26, Vacuolar protein sorting-associated protein 26, [Score=431, Expect=9e-151]} {Smed: dd_Smed_v6_3214_0_1, dd_Smed_v6_3214_0_1, [RH, Score=454, Expect=7e-160]} {RNA1509_19094} {RNA1310_25058, RNA1509_19094} {RNA1509_19094, RNA815_12346}
4.	MligTC455_35328	306	6.38	Mlig455_037168, Mlig455_058716	Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 1.666/0.01401	TAAR6	0.97	-	-	-	-	-	0.970	Mlig455_037168 {REF} {Length: 941} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.3]} {Human: ENSG00000146383, TAAR6, trace amine associated receptor 6, [Score=47.8, Expect=1e-05]} {Mouse: ENSMUSG00000096442, Taar8a, trace amine-associated receptor 8A, [Score=52.0, Expect=4e-07]; ENSMUSG00000100004, Taar8c, trace amine-associated receptor 8C, [Score=50.8, Expect=9e-07]; ENSMUSG00000100186, Taar8b, trace amine-associated receptor 8B, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_75851_0_1, dd_Smed_v6_75851_0_1, [Score=56.6, Expect=1e-09]} Mlig455_058716 {REF} {Length: 6449} {RNA1509_17677, RNA1509_60174} {RNA1310_2088.1, RNA1509_60174} {RNA1509_60174, RNA815_10955}
5.	MligTC455_42541	218	4.54	Mlig455_034620	Neo: Int S/G2/M Age: Up-Down-Down Region-specific R4: 3.560		0.962	-	-	-	-	-	0.962	Mlig455_034620 {REF} {Length: 3904} {TRANSSPLICED} {Pfam: Ankyrin repeats (many copies) [PF13857.8, score=23.0]; Ankyrin repeats (3 copies) [PF12796.9, score=21.8]} {Mouse: ENSMUSG00000041890, Git2, G protein-coupled receptor kinase-interactor 2, [Score=49.3, Expect=6e-06]} {RNA1509_36526, RNA1509_39452, RNA1509_49379, RNA1509_53831} {RNA1310_6890, RNA1509_39452, RNA1509_49379, RNA1509_53831} {RNA1509_39452, RNA1509_49379, RNA1509_53831, RNA815_16000}
6.	MligTC455_50746	169	3.52	Mlig455_002815	Neo: - Age: logFC(26M/2M)=0.391	TYW5	0.96	-	-	-	-	-	0.960	Mlig455_002815 {REF} {Length: 1947} {TRANSSPLICED} {Pfam: Cupin-like domain [PF13621.8, score=116.6]; JmjC domain, hydroxylase [PF02373.24, score=20.1]; Cupin superfamily protein [PF08007.14, score=19.8]} {Human: ENSG00000162971, TYW5, tRNA-yW synthesizing protein 5, [RH, Score=252, Expect=9e-82]} {Mouse: ENSMUSG00000048495, Tyw5, tRNA-yW synthesizing protein 5, [RH, Score=243, Expect=2e-78]} {Dmel: FBgn0035166, CG13902, [Score=69.7, Expect=6e-13]} {Smed: dd_Smed_v6_8202_0_1, dd_Smed_v6_8202_0_1, [RH, Score=243, Expect=7e-79]} {RNA1509_22421, RNA1509_40253} {RNA1310_30547, RNA1509_22421, RNA1509_40253} {RNA1509_22421, RNA1509_40253, RNA815_8750}
7.	MligTC455_25043	838	17.45	Mlig455_025756, Mlig455_064378, Mlig455_064405	Neo: - Age: - Region-enriched R4: 1.713/0.04997	SLCO5A1	0.953	-	-	-	-	-	0.953	Mlig455_025756 {REF} {Length: 4885} {TRANSSPLICED} {Pfam: Organic Anion Transporter Polypeptide (OATP) family [PF03137.22, score=261.2]} {Human: ENSG00000137571, SLCO5A1, solute carrier organic anion transporter family member 5A1, [Score=205, Expect=1e-54]} {Mouse: ENSMUSG00000025938, Slco5a1, solute carrier organic anion transporter family, member 5A1, [Score=222, Expect=1e-60]} {Dmel: FBgn0032123, Oatp30B, Organic anion transporting polypeptide 30B, [Score=213, Expect=8e-57]} {Celegans: WBGene00018739, F53B1.8, Solute carrier organic anion transporter family member, [Score=121, Expect=5e-28]} {Smed: dd_Smed_v6_8289_0_1, dd_Smed_v6_8289_0_1, [Score=148, Expect=8e-37]} {RNA1509_42276} {RNA1310_3704} {RNA815_11526} Mlig455_064378 {REF} {Length: 5250} {TRANSSPLICED} {Pfam: Organic Anion Transporter Polypeptide (OATP) family [PF03137.22, score=411.2]; Major Facilitator Superfamily [PF07690.18, score=53.9]; Kazal-type serine protease inhibitor domain [PF07648.17, score=20.6]} {Human: ENSG00000137571, SLCO5A1, solute carrier organic anion transporter family member 5A1, [Score=320, Expect=1e-94]} {Mouse: ENSMUSG00000025938, Slco5a1, solute carrier organic anion transporter family, member 5A1, [Score=336, Expect=9e-101]} {Dmel: FBgn0032123, Oatp30B, Organic anion transporting polypeptide 30B, [RH, Score=327, Expect=3e-95]} {Celegans: WBGene00018739, F53B1.8, Solute carrier organic anion transporter family member, [Score=233, Expect=2e-64]} {Smed: dd_Smed_v6_8289_0_1, dd_Smed_v6_8289_0_1, [Score=243, Expect=3e-68]} {RNA1509_22001, RNA1509_32188} {RNA1310_3704, RNA1509_22001, RNA1509_32188} {RNA1509_22001, RNA1509_32188, RNA815_11526} Mlig455_064405 {REF} {Length: 5262} {TRANSSPLICED} {Pfam: Organic Anion Transporter Polypeptide (OATP) family [PF03137.22, score=410.9]; Major Facilitator Superfamily [PF07690.18, score=52.9]; Kazal-type serine protease inhibitor domain [PF07648.17, score=20.6]} {Human: ENSG00000137571, SLCO5A1, solute carrier organic anion transporter family member 5A1, [Score=320, Expect=1e-94]} {Mouse: ENSMUSG00000025938, Slco5a1, solute carrier organic anion transporter family, member 5A1, [Score=336, Expect=8e-101]} {Dmel: FBgn0032123, Oatp30B, Organic anion transporting polypeptide 30B, [RH, Score=327, Expect=2e-95]} {Celegans: WBGene00018739, F53B1.8, Solute carrier organic anion transporter family member, [Score=233, Expect=3e-64]} {Smed: dd_Smed_v6_8289_0_1, dd_Smed_v6_8289_0_1, [Score=243, Expect=3e-68]} {RNA1509_22001, RNA1509_41344, RNA1509_42276} {RNA1310_3704, RNA1509_41344, RNA1509_42276} {RNA1509_41344, RNA1509_42276, RNA815_11526}
8.	MligTC455_52496	28	0.57	Mlig455_013244	Neo: - Age: -	CACFD1	0.95	-	-	-	-	-	0.950	Mlig455_013244 {REF} {Length: 5690} {Pfam: Uncharacterized conserved protein CG6151-P [PF10233.11, score=67.5]} {Human: ENSG00000160325, CACFD1, calcium channel flower domain containing 1, [Score=57.0, Expect=9e-10]; ENSG00000280479, CACFD1, calcium channel flower domain containing 1, [Score=57.0, Expect=9e-10]} {Mouse: ENSMUSG00000015488, Cacfd1, calcium channel flower domain containing 1, [Score=55.8, Expect=6e-10]} {RNA1509_42052} {RNA1310_29216} {RNA815_11121.1}

Berezikov Lab - 2020-2021 © ERIBA