M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35888

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35888 1247 25.98 Mlig455_000163

Neo: -

Age: -

 Mlig455_000163 {REF} {Length: 2488} {Pfam: Domain of unknown function (DUF4749) [PF15936.7, score=35.2]} {RNA1509_22539} {RNA1310_6784} {RNA815_1546.1}

Cumulative graph for MligTC455_35888

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.841 4.9 0.42889 1.00000
RegionR2 -0.367 4.9 0.29024 0.67879
RegionR3 -0.459 4.9 0.13393 0.62690
RegionR4 0.258 4.9 0.46806 0.79596
RegionR5 -0.513 4.9 0.08809 0.27948
RegionR6 0.016 4.9 0.95275 1.00000
RegionR7 0.872 4.9 0.00764 0.14551
RegionR8 1.033 4.9 0.01107 0.19961

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.201 4.9 0.89383 1.00000
RegenerationR2 -0.083 4.9 0.75320 0.97439
RegenerationR3 -0.442 4.9 0.15385 0.58384
RegenerationR4 -0.558 4.9 0.08044 0.44968
RegenerationR5 -0.475 4.9 0.11280 0.50680
RegenerationR6 -0.915 4.9 0.00376 0.07274
RegenerationBL -0.451 4.9 0.17108 0.49601
RegenerationTP -1.259 4.9 0.00068 0.03837


Genes with expression patterns similar to MligTC455_35888

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35888 1247 25.98 Mlig455_000163

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000163 {REF} {Length: 2488} {Pfam: Domain of unknown function (DUF4749) [PF15936.7, score=35.2]} {RNA1509_22539} {RNA1310_6784} {RNA815_1546.1}
2. MligTC455_35889 3338 69.55 Mlig455_000173, Mlig455_067716

Neo: -

Age: logFC(26M/2M)=0.414

Region-enriched R7: 1.070/0.00379

 LDB3 5.597 0.983 0.959 0.953 0.969 0.880 0.853

Mlig455_000173 {REF} {Length: 3141} {Pfam: PDZ domain [PF00595.26, score=50.2]; Domain of unknown function (DUF4749) [PF15936.7, score=35.6]} {Human: ENSG00000122367, LDB3, LIM domain binding 3, [RH, Score=78.2, Expect=4e-15]} {Mouse: ENSMUSG00000021798, Ldb3, LIM domain binding 3, [RH, Score=78.2, Expect=1e-15]} {Dmel: FBgn0035917, Zasp66, Z band alternatively spliced PDZ-motif protein 66, [Score=77.8, Expect=1e-15]} {Celegans: WBGene00010444, magi-1, MAGI (Membrane Associated Guanylate kinase Inverted) homolog, [Score=48.1, Expect=1e-05]} {Smed: dd_Smed_v6_1210_0_1, dd_Smed_v6_1210_0_1, [RH, Score=115, Expect=9e-28]} {RNA1509_22539, RNA1509_26044, RNA1509_2989, RNA1509_37926} {RNA1310_5136, RNA1509_22539, RNA1509_26044, RNA1509_2989, RNA1509_37926} {RNA1509_22539, RNA1509_26044, RNA1509_2989, RNA1509_37926, RNA815_1546.1}

Mlig455_067716 {REF} {Length: 3083} {Pfam: Domain of unknown function (DUF4749) [PF15936.7, score=35.2]} {RNA1509_22539} {RNA1310_6784} {RNA815_1546.1}
3. MligTC455_52884 1256 26.18 Mlig455_039238, Mlig455_053902

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.603

 LRRC6 1.853 - - - 0.951 - 0.902

Mlig455_039238 {REF} {Length: 1660} {TRANSSPLICED} {Pfam: Leucine-rich repeat [PF14580.8, score=55.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.3]; Leucine rich repeat [PF13855.8, score=33.7]} {Human: ENSG00000129295, LRRC6, leucine rich repeat containing 6, [RH, Score=375, Expect=2e-126]} {Mouse: ENSMUSG00000022375, Lrrc6, leucine rich repeat containing 6 (testis), [RH, Score=388, Expect=3e-131]} {Dmel: FBgn0014395, tilB, touch insensitive larva B, [RH, Score=326, Expect=2e-108]} {Celegans: WBGene00011637, sds-22, Protein phosphatase 1 regulatory subunit SDS22 homolog, [Score=56.6, Expect=1e-08]} {Smed: dd_Smed_v6_10124_0_1, dd_Smed_v6_10124_0_1, [RH, Score=451, Expect=5e-157]} {RNA1509_19577} {RNA1310_13541.1} {RNA815_15351}

Mlig455_053902 {REF} {Length: 1689} {Pfam: Leucine-rich repeat [PF14580.8, score=55.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.3]; Leucine rich repeat [PF13855.8, score=33.7]} {Human: ENSG00000129295, LRRC6, leucine rich repeat containing 6, [RH, Score=375, Expect=2e-126]} {Mouse: ENSMUSG00000022375, Lrrc6, leucine rich repeat containing 6 (testis), [RH, Score=388, Expect=3e-131]} {Dmel: FBgn0014395, tilB, touch insensitive larva B, [RH, Score=326, Expect=2e-108]} {Celegans: WBGene00011637, sds-22, Protein phosphatase 1 regulatory subunit SDS22 homolog, [Score=56.6, Expect=1e-08]} {Smed: dd_Smed_v6_10124_0_1, dd_Smed_v6_10124_0_1, [RH, Score=451, Expect=5e-157]} {RNA1509_19577} {RNA1310_13541.1} {RNA815_15351}
4. MligTC455_20723 1908 39.76 Mlig455_026557

Neo: -

Age: -

 CCDC62 1.802 - - - 0.830 0.972 - Mlig455_026557 {REF} {Length: 2509} {Human: ENSG00000130783, CCDC62, coiled-coil domain containing 62, [RH, Score=117, Expect=7e-27]} {Mouse: ENSMUSG00000061882, Ccdc62, coiled-coil domain containing 62, [RH, Score=122, Expect=1e-28]} {RNA1509_39993} {RNA1310_6237.1} {RNA815_13573}
5. MligTC455_25322 530 11.05 Mlig455_016477

Neo: -

Age: logFC(26M/2M)=-0.329

 1.701 - - - 0.965 0.736 - Mlig455_016477 {REF} {Length: 3328} {Dmel: FBgn0263076, Klp54D, Kinesin-like protein at 54D, [Score=85.5, Expect=9e-17]} {Smed: dd_Smed_v6_45970_0_1, dd_Smed_v6_45970_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_56505} {RNA1310_5922.1} {RNA815_12097}
6. MligTC455_43175 1395 29.07 Mlig455_031201

Neo: -

Age: logFC(26M/2M)=-0.710

 CAPN5 1.665 - - - 0.963 0.702 - Mlig455_031201 {REF} {Length: 2222} {Pfam: Calpain family cysteine protease [PF00648.23, score=181.2]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=190, Expect=5e-52]; ENSG00000203697, CAPN8, calpain 8, [Score=182, Expect=6e-49]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=6e-51]; ENSMUSG00000038599, Capn8, calpain 8, [Score=186, Expect=3e-50]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=179, Expect=9e-49]} {Celegans: WBGene00000545, clp-4, CaLPain family, [Score=171, Expect=2e-45]} {Smed: dd_Smed_v6_1971_0_3, dd_Smed_v6_1971_0_3, [Score=166, Expect=1e-43]} {RNA1509_5906} {RNA1310_10573, RNA1509_5906} {RNA1509_5906, RNA815_3643}
7. MligTC455_27312 34 0.71 Mlig455_031812

Neo: -

Age: -

 TLL2 0.968 - - - - 0.968 - Mlig455_031812 {REF} {Length: 3695} {Pfam: CUB domain [PF00431.22, score=151.7]} {Human: ENSG00000095587, TLL2, tolloid like 2, [Score=67.4, Expect=1e-10]; ENSG00000107611, CUBN, cubilin, [Score=66.6, Expect=3e-10]} {Mouse: ENSMUSG00000025013, Tll2, tolloid-like 2, [Score=70.5, Expect=9e-12]} {Dmel: FBgn0261262, CG42613, [Score=97.1, Expect=4e-20]} {Celegans: WBGene00002977, lev-10, LEV-10B, [Score=80.5, Expect=3e-15]} {Smed: dd_Smed_v6_19493_0_1, dd_Smed_v6_19493_0_1, [RH, Score=276, Expect=6e-80]} {RNA1509_30788} {RNA1310_1673.1} {RNA815_5892}
8. MligTC455_37341 1515 31.57 Mlig455_067124

Neo: Irradiation

Age: -

 0.963 - - - 0.963 - - Mlig455_067124 {REF} {Length: 1947} {TRANSSPLICED} {Smed: dd_Smed_v6_10348_0_1, dd_Smed_v6_10348_0_1, [RH, Score=208, Expect=1e-62]} {RNA1509_36658, RNA1509_47118, RNA1509_47559, RNA1509_5662} {RNA1310_3755, RNA1509_36658, RNA1509_47118, RNA1509_47559, RNA1509_5662} {RNA1509_36658, RNA1509_47118, RNA1509_47559, RNA1509_5662, RNA815_25489}
9. MligTC455_37004 380 7.91 Mlig455_061585

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_061585 {REF} {Length: 4759} {TRANSSPLICED} {Smed: dd_Smed_v6_6723_0_1, dd_Smed_v6_6723_0_1, [Score=290, Expect=2e-89]} {RNA1509_27820} {RNA1310_12455, RNA1509_27820} {RNA1509_27820, RNA815_17018}
10. MligTC455_43176 1391 28.98 Mlig455_031202

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_031202 {REF} {Length: 1602} {tRNA: Val(CAC),pseudo, score=27.7} {RNA1509_5906} {RNA1310_10573} {RNA815_3643}
11. MligTC455_20230 1282 26.71 Mlig455_003493, Mlig455_015562

Neo: -

Age: logFC(26M/2M)=-0.236

 FAM227A, FAM227B 0.958 - - - 0.958 - -

Mlig455_003493 {REF} {Length: 2231} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.0]} {Human: ENSG00000184949, FAM227A, family with sequence similarity 227 member A, [Score=111, Expect=2e-25]} {Mouse: ENSMUSG00000042564, Fam227a, family with sequence similarity 227, member A, [RH, Score=96.7, Expect=8e-21]; ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=93.6, Expect=6e-20]} {Smed: dd_Smed_v6_15102_0_3, dd_Smed_v6_15102_0_3, [Score=157, Expect=3e-42]} {RNA1509_44428} {RNA1310_6983.2} {RNA815_5876}

Mlig455_015562 {REF} {Length: 2171} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.7]} {Human: ENSG00000166262, FAM227B, family with sequence similarity 227 member B, [RH, Score=107, Expect=2e-24]} {Mouse: ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=98.6, Expect=1e-21]} {Smed: dd_Smed_v6_15102_0_7, dd_Smed_v6_15102_0_7, [Score=178, Expect=5e-50]} {RNA1509_58462} {RNA1310_11701} {RNA815_12354}
12. MligTC455_22249 1541 32.1 Mlig455_059169

Neo: -

Age: logFC(26M/2M)=-0.196

 PPP1R3A 0.952 - - - 0.952 - - Mlig455_059169 {REF} {Length: 3756} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=80.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=40.9]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=91.3, Expect=2e-19]; ENSG00000132825, PPP1R3D, protein phosphatase 1 regulatory subunit 3D, [Score=87.4, Expect=5e-19]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [RH, Score=103, Expect=2e-23]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=110, Expect=3e-26]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=82.0, Expect=3e-17]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=139, Expect=1e-38]} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1310_9014.1, RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463, RNA815_3914.1}
13. MligTC455_40095 1262 26.3 Mlig455_033090

Neo: -

Age: logFC(26M/2M)=-0.702

Region-enriched R4: 1.663/0.00275
Region-enriched R6: 1.261/0.01807

 LITAF 0.951 - - - - - 0.951 Mlig455_033090 {REF} {Length: 1159} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=83.7]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=70.9, Expect=1e-15]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=72.8, Expect=2e-16]} {Dmel: FBgn0052280, CG32280, [Score=67.4, Expect=7e-15]} {Celegans: WBGene00017513, F16F9.1, [RH, Score=67.8, Expect=8e-15]} {Smed: dd_Smed_v6_2503_0_1, dd_Smed_v6_2503_0_1, [Score=65.1, Expect=2e-14]} {RNA1509_24760} {RNA1310_13198, RNA1509_24760} {RNA1509_24760, RNA815_16167.2}
14. MligTC455_40725 90 1.88 Mlig455_024305, Mlig455_024360, Mlig455_024474

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_024305 {REF} {Length: 629} {NoTransDecoderORF} {RNA1509_59556} {RNA1310_75707.1}

Mlig455_024360 {REF} {Length: 2023} {NoTransDecoderORF} {RNA1509_59556} {RNA1310_55430}

Mlig455_024474 {REF} {Length: 2205} {NoTransDecoderORF} {RNA1509_59556} {RNA1310_55430, RNA1509_59556}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA