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Results for MligTC455_35930

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_35930	426	8.87	Mlig455_013588, Mlig455_020368, Mlig455_020427, Mlig455_030258, Mlig455_032612, Mlig455_035614, Mlig455_051237, Mlig455_052667, Mlig455_070378	Neo: - Age: Up-Down-Up Region-enriched R4: 2.638/0.03574	NYNRIN, RTL1	Mlig455_013588 {REF} {Length: 1060} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.2]; Spumavirus aspartic protease (A9) [PF03539.16, score=21.2]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=181, Expect=2e-52]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_20962} Mlig455_020368 {REF} {Length: 5223} {Pfam: Zinc knuckle [PF00098.25, score=23.7]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_020427 {REF} {Length: 5234} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.7]; Zinc knuckle [PF00098.25, score=21.4]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_030258 {REF} {Length: 3077} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=51.6, Expect=1e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=99.4, Expect=4e-23]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_032612 {REF} {Length: 5598} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1, RNA1509_10020} {RNA1509_10020, RNA815_10231} Mlig455_035614 {REF} {Length: 5367} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.2]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=69.5]; Integrase zinc binding domain [PF17921.3, score=61.5]; Integrase core domain [PF00665.28, score=51.2]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=90.1, Expect=8e-18]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=75.9, Expect=1e-13]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [RH, Score=219, Expect=2e-64]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_051237 {REF} {Length: 4995} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=50.8, Expect=2e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=103, Expect=2e-24]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_052667 {REF} {Length: 5183} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_15136} Mlig455_070378 {REF} {Length: 5332} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=98.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=96.4]; Integrase zinc binding domain [PF17921.3, score=62.8]; Integrase core domain [PF00665.28, score=51.7]; Spumavirus aspartic protease (A9) [PF03539.16, score=19.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]} {Dmel: FBgn0029807, CG3108, [Score=61.2, Expect=5e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=443, Expect=5e-138]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35930

426

8.87

Mlig455_013588, Mlig455_020368, Mlig455_020427, Mlig455_030258, Mlig455_032612, Mlig455_035614, Mlig455_051237, Mlig455_052667, Mlig455_070378

Neo: -

Age: Up-Down-Up

Region-enriched R4: 2.638/0.03574

NYNRIN, RTL1

Mlig455_013588 {REF} {Length: 1060} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.2]; Spumavirus aspartic protease (A9) [PF03539.16, score=21.2]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=181, Expect=2e-52]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_20962}

Mlig455_020368 {REF} {Length: 5223} {Pfam: Zinc knuckle [PF00098.25, score=23.7]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Mlig455_020427 {REF} {Length: 5234} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.7]; Zinc knuckle [PF00098.25, score=21.4]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Mlig455_030258 {REF} {Length: 3077} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=51.6, Expect=1e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=99.4, Expect=4e-23]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Mlig455_032612 {REF} {Length: 5598} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1, RNA1509_10020} {RNA1509_10020, RNA815_10231}

Mlig455_035614 {REF} {Length: 5367} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.2]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=69.5]; Integrase zinc binding domain [PF17921.3, score=61.5]; Integrase core domain [PF00665.28, score=51.2]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=90.1, Expect=8e-18]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=75.9, Expect=1e-13]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [RH, Score=219, Expect=2e-64]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Mlig455_051237 {REF} {Length: 4995} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=50.8, Expect=2e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=103, Expect=2e-24]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Mlig455_052667 {REF} {Length: 5183} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_15136}

Mlig455_070378 {REF} {Length: 5332} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=98.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=96.4]; Integrase zinc binding domain [PF17921.3, score=62.8]; Integrase core domain [PF00665.28, score=51.7]; Spumavirus aspartic protease (A9) [PF03539.16, score=19.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]} {Dmel: FBgn0029807, CG3108, [Score=61.2, Expect=5e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=443, Expect=5e-138]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}

Cumulative graph for MligTC455_35930

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-3.509	3.705	1.00000	1.00000
RegionR2	1.524	3.705	0.14612	0.47665
RegionR3	1.838	3.705	0.04300	0.36246
RegionR4	2.638	3.705	0.00489	0.03574
RegionR5	1.928	3.705	0.02468	0.11269
RegionR6	0.996	3.705	0.30463	0.89549
RegionR7	-4.967	3.705	1.00000	1.00000
RegionR8	-0.448	3.705	0.86144	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	5.129	3.705	0.29390	0.99173
RegenerationR2	-0.599	3.705	0.23928	0.68703
RegenerationR3	0.842	3.705	0.14400	0.57112
RegenerationR4	0.447	3.705	0.44467	0.83930
RegenerationR5	1.587	3.705	0.00203	0.07791
RegenerationR6	1.338	3.705	0.02526	0.19836
RegenerationBL	2.872	3.705	0.01489	0.12792
RegenerationTP	3.174	3.705	0.06897	0.42217

Genes with expression patterns similar to MligTC455_35930

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35930	426	8.87	Mlig455_013588, Mlig455_020368, Mlig455_020427, Mlig455_030258, Mlig455_032612, Mlig455_035614, Mlig455_051237, Mlig455_052667, Mlig455_070378	Neo: - Age: Up-Down-Up Region-enriched R4: 2.638/0.03574	NYNRIN, RTL1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_013588 {REF} {Length: 1060} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.2]; Spumavirus aspartic protease (A9) [PF03539.16, score=21.2]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=181, Expect=2e-52]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_20962} Mlig455_020368 {REF} {Length: 5223} {Pfam: Zinc knuckle [PF00098.25, score=23.7]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_020427 {REF} {Length: 5234} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.7]; Zinc knuckle [PF00098.25, score=21.4]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_030258 {REF} {Length: 3077} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=51.6, Expect=1e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=99.4, Expect=4e-23]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_032612 {REF} {Length: 5598} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1, RNA1509_10020} {RNA1509_10020, RNA815_10231} Mlig455_035614 {REF} {Length: 5367} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.2]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=69.5]; Integrase zinc binding domain [PF17921.3, score=61.5]; Integrase core domain [PF00665.28, score=51.2]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=90.1, Expect=8e-18]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=75.9, Expect=1e-13]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [RH, Score=219, Expect=2e-64]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_051237 {REF} {Length: 4995} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=50.8, Expect=2e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=103, Expect=2e-24]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231} Mlig455_052667 {REF} {Length: 5183} {Pfam: Retrotransposon gag protein [PF03732.19, score=30.6]; Zinc knuckle [PF00098.25, score=22.5]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_15136} Mlig455_070378 {REF} {Length: 5332} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=98.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=96.4]; Integrase zinc binding domain [PF17921.3, score=62.8]; Integrase core domain [PF00665.28, score=51.7]; Spumavirus aspartic protease (A9) [PF03539.16, score=19.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=94.4, Expect=6e-19]} {Dmel: FBgn0029807, CG3108, [Score=61.2, Expect=5e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=443, Expect=5e-138]} {RNA1509_10020} {RNA1310_1554.1} {RNA815_10231}
2.	MligTC455_35926	40	0.84	Mlig455_030259	Neo: - Age: -		3.679	-	-	0.990	0.953	0.792	0.944	Mlig455_030259 {REF} {Length: 2193} {NoTransDecoderORF} {RNA1509_10020} {RNA1310_98329} {RNA815_57545}
3.	MligTC455_35927	31	0.64	Mlig455_067147	Neo: - Age: -		2.96	-	-	0.987	-	0.982	0.991	Mlig455_067147 {REF} {Length: 1423} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=128, Expect=1e-33]} {RNA1509_10020} {RNA1310_2173} {RNA815_10231}
4.	MligTC455_13273	193	4.03	Mlig455_036464	Neo: - Age: -		1.732	-	-	-	0.962	-	0.770	Mlig455_036464 {REF} {Length: 1541} {Pfam: EGF-like domain [PF00008.29, score=21.0]} {RNA1509_22753} {RNA1310_46979, RNA1509_22753} {RNA1509_22753, RNA815_24670}
5.	MligTC455_41218	762	15.88	Mlig455_003413	Neo: - Age: - Region-enriched R4: 1.858/0.00046 Region-enriched R3: 1.588/0.00094 Region-enriched R5: 1.173/0.00948	CAV3	0.969	-	-	-	0.969	-	-	Mlig455_003413 {REF} {Length: 917} {Pfam: Caveolin [PF01146.19, score=121.9]} {Human: ENSG00000182533, CAV3, caveolin 3, [Score=94.4, Expect=1e-24]} {Mouse: ENSMUSG00000062694, Cav3, caveolin 3, [Score=94.0, Expect=1e-24]} {Celegans: WBGene00000302, cav-2, Caveolin-2, [Score=64.7, Expect=1e-13]} {Smed: dd_Smed_v6_8555_0_1, dd_Smed_v6_8555_0_1, [Score=96.7, Expect=2e-26]} {RNA1509_13161} {RNA1310_40604, RNA1509_13161} {RNA1509_13161, RNA815_21908}
6.	MligTC455_29906	249	5.2	Mlig455_023040, Mlig455_069770	Neo: - Age: Down-Down-Up Region-enriched R4: 3.873/0.00145	MAP3K4	0.95	-	-	-	-	-	0.950	Mlig455_023040 {REF} {Length: 3009} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=164.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.6]; Ankyrin repeats (3 copies) [PF12796.9, score=82.1]; Ankyrin repeat [PF13606.8, score=58.3]; Ankyrin repeats (many copies) [PF13637.8, score=53.6]; Ankyrin repeat [PF00023.32, score=49.8]; Ankyrin repeats (many copies) [PF13857.8, score=49.3]; Fungal protein kinase [PF17667.3, score=22.1]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=128, Expect=8e-30]; ENSG00000165238, WNK2, WNK lysine deficient protein kinase 2, [Score=122, Expect=4e-28]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=124, Expect=1e-28]; ENSMUSG00000037989, Wnk2, WNK lysine deficient protein kinase 2, [Score=118, Expect=6e-27]; ENSMUSG00000041245, Wnk3, WNK lysine deficient protein kinase 3, [Score=118, Expect=3e-27]} {Dmel: FBgn0024329, Mekk1, [Score=127, Expect=5e-30]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=119, Expect=2e-27]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=118, Expect=3e-27]} {RNA1509_27731} {RNA1310_10050} {RNA815_10088.1} Mlig455_069770 {REF} {Length: 3989} {Pfam: Protein kinase domain [PF00069.27, score=313.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=242.6]; Ankyrin repeats (3 copies) [PF12796.9, score=88.3]; Ankyrin repeat [PF13606.8, score=50.2]; Ankyrin repeats (many copies) [PF13637.8, score=50.2]; Fungal protein kinase [PF17667.3, score=49.8]; Ankyrin repeats (many copies) [PF13857.8, score=49.5]; Ankyrin repeat [PF00023.32, score=42.3]; ABC1 atypical kinase-like domain [PF03109.18, score=35.1]; Phosphotransferase enzyme family [PF01636.25, score=28.6]; Kinase-like [PF14531.8, score=26.9]; Ternary complex associated domain 9 [PF19974.1, score=22.2]; Seadornavirus VP7 [PF07387.13, score=21.6]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=132, Expect=1e-30]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=128, Expect=1e-30]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=129, Expect=7e-30]; ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=125, Expect=1e-29]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=124, Expect=3e-28]} {Dmel: FBgn0024329, Mekk1, [Score=131, Expect=1e-30]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=128, Expect=9e-30]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=118, Expect=9e-27]} {RNA1509_27731} {RNA1310_10050} {RNA815_9449.1}
7.	MligTC455_41329	267	5.56	Mlig455_019709	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_019709 {REF} {Length: 1467} {TRANSSPLICED} {RNA1509_17660, RNA1509_56538} {RNA1310_22415.1, RNA1509_17660, RNA1509_56538} {RNA1509_17660, RNA1509_56538, RNA815_22991}