M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35984

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35984 419 8.73 Mlig455_015119, Mlig455_015239

Neo: Int S/G2/M

Age: -

Region-enriched R2: 2.401/0.00423

Mlig455_015119 {REF} {Length: 4661} {Pfam: TATA box binding protein associated factor (TAF) [PF02969.19, score=45.0]} {RNA1509_15017} {RNA1310_6705} {RNA815_9564}

Mlig455_015239 {REF} {Length: 3384} {Pfam: TATA box binding protein associated factor (TAF) [PF02969.19, score=45.0]} {RNA1509_15017} {RNA1310_6705, RNA1509_15017} {RNA1509_15017, RNA815_9564}

Cumulative graph for MligTC455_35984

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.699 3.614 0.03123 0.44994
RegionR2 2.401 3.614 0.00011 0.00423
RegionR3 -0.078 3.614 0.87905 1.00000
RegionR4 -1.531 3.614 0.00884 0.05560
RegionR5 0.459 3.614 0.28742 0.61802
RegionR6 0.878 3.614 0.06932 0.49122
RegionR7 0.674 3.614 0.25115 0.87763
RegionR8 -0.104 3.614 0.90741 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.843 3.614 0.64518 1.00000
RegenerationR2 -0.019 3.614 0.97842 1.00000
RegenerationR3 0.995 3.614 0.12983 0.55295
RegenerationR4 1.225 3.614 0.05211 0.36625
RegenerationR5 0.216 3.614 0.68854 0.94730
RegenerationR6 0.841 3.614 0.15761 0.48541
RegenerationBL -0.527 3.614 0.57410 0.92723
RegenerationTP 1.027 3.614 0.19063 0.62953


Genes with expression patterns similar to MligTC455_35984

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35984 419 8.73 Mlig455_015119, Mlig455_015239

Neo: Int S/G2/M

Age: -

Region-enriched R2: 2.401/0.00423

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_015119 {REF} {Length: 4661} {Pfam: TATA box binding protein associated factor (TAF) [PF02969.19, score=45.0]} {RNA1509_15017} {RNA1310_6705} {RNA815_9564}

Mlig455_015239 {REF} {Length: 3384} {Pfam: TATA box binding protein associated factor (TAF) [PF02969.19, score=45.0]} {RNA1509_15017} {RNA1310_6705, RNA1509_15017} {RNA1509_15017, RNA815_9564}
2. MligTC455_48567 358 7.45 Mlig455_043150

Neo: -

Age: -

Region-enriched R5: 1.668/0.02982

 1.831 - - 0.863 - - 0.968 Mlig455_043150 {REF} {Length: 3448} {TRANSSPLICED} {RNA1509_54015} {RNA1310_37014, RNA1509_54015} {RNA1509_54015, RNA815_7246.1}
3. MligTC455_34197 156 3.24 Mlig455_055430

Neo: -

Age: Down-Up-Down

 AVL9 0.969 - - - - - 0.969 Mlig455_055430 {REF} {Length: 4958} {Pfam: Transport protein Avl9 [PF09794.11, score=422.7]; Docking domain of Afi1 for Arf3 in vesicle trafficking [PF07792.14, score=27.1]; DENN domain-containing protein 11 [PF09804.11, score=27.0]} {Human: ENSG00000105778, AVL9, AVL9 cell migration associated, [Score=245, Expect=4e-70]} {Mouse: ENSMUSG00000029787, Avl9, AVL9 cell migration associated, [Score=267, Expect=5e-78]} {Dmel: FBgn0030499, CG11178, [Score=225, Expect=1e-62]} {Celegans: WBGene00020822, T26A5.6, [Score=197, Expect=2e-54]} {Smed: dd_Smed_v6_6271_0_1, dd_Smed_v6_6271_0_1, [Score=207, Expect=2e-56]} {RNA1509_5789} {RNA1310_969.3} {RNA815_4477.1}
4. MligTC455_13360 645 13.43 Mlig455_024715

Neo: -

Age: -

 0.968 - - - - - 0.968 Mlig455_024715 {REF} {Length: 1887} {TRANSSPLICED} {RNA1509_18800} {RNA1310_27847.2} {RNA815_23363}
5. MligTC455_46508 553 11.53 Mlig455_039158

Neo: -

Age: -

Region-enriched R4: 3.087/0.02676

 0.962 - - - - - 0.962 Mlig455_039158 {REF} {Length: 2537} {Pfam: Lysosomal transcription factor, NCU-G1 [PF15065.8, score=241.7]} {Smed: dd_Smed_v6_2685_0_1, dd_Smed_v6_2685_0_1, [RH, Score=139, Expect=1e-36]} {RNA1509_23056, RNA1509_24004, RNA1509_36817, RNA1509_7566} {RNA1310_18836, RNA1509_23056, RNA1509_24004, RNA1509_36817} {RNA1509_23056, RNA1509_24004, RNA1509_36817, RNA815_9023}
6. MligTC455_07914 285 5.94 Mlig455_032141

Neo: -

Age: logFC(26M/2M)=0.198

 PRKAB2 0.959 - - - - - 0.959 Mlig455_032141 {REF} {Length: 2463} {TRANSSPLICED} {Pfam: Glycogen recognition site of AMP-activated protein kinase [PF16561.7, score=104.2]; 5'-AMP-activated protein kinase beta subunit, interaction domain [PF04739.17, score=88.5]; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) [PF02922.20, score=22.6]} {Human: ENSG00000131791, PRKAB2, protein kinase AMP-activated non-catalytic subunit beta 2, [RH, Score=228, Expect=1e-73]; ENSG00000111725, PRKAB1, protein kinase AMP-activated non-catalytic subunit beta 1, [RH, Score=225, Expect=2e-72]} {Mouse: ENSMUSG00000029513, Prkab1, protein kinase, AMP-activated, beta 1 non-catalytic subunit, [RH, Score=227, Expect=1e-73]; ENSMUSG00000038205, Prkab2, protein kinase, AMP-activated, beta 2 non-catalytic subunit, [RH, Score=226, Expect=4e-73]} {Dmel: FBgn0260972, alc, alicorn, [RH, Score=202, Expect=4e-63]} {Celegans: WBGene00010115, aakb-1, AMP-Activated Kinase Beta subunit, [Score=196, Expect=6e-62]} {Smed: dd_Smed_v6_4735_0_1, dd_Smed_v6_4735_0_1, [RH, Score=222, Expect=3e-71]} {RNA1509_18405, RNA1509_28206, RNA1509_40331} {RNA1310_19660.1, RNA1509_18405, RNA1509_28206, RNA1509_40331} {RNA1509_18405, RNA1509_28206, RNA1509_40331, RNA815_7484}
7. MligTC455_33882 644 13.41 Mlig455_055943

Neo: -

Age: -

 STX12 0.959 - - - - - 0.959 Mlig455_055943 {REF} {Length: 3583} {TRANSSPLICED} {Pfam: SNARE domain [PF05739.21, score=62.2]; Syntaxin-like protein [PF14523.8, score=58.6]} {Human: ENSG00000117758, STX12, syntaxin 12, [Score=132, Expect=1e-36]} {Mouse: ENSMUSG00000019998, Stx7, syntaxin 7, [Score=126, Expect=1e-34]; ENSMUSG00000028879, Stx12, syntaxin 12, [Score=125, Expect=2e-34]} {Dmel: FBgn0267849, Syx7, Syntaxin 7, [Score=108, Expect=8e-28]} {Celegans: WBGene00009478, syx-7, SYntaXin, [Score=95.9, Expect=2e-23]} {Smed: dd_Smed_v6_4152_0_1, dd_Smed_v6_4152_0_1, [Score=107, Expect=4e-28]} {RNA1509_15629, RNA1509_38250, RNA1509_55825} {RNA1310_27494, RNA1509_15629, RNA1509_55825} {RNA1509_15629, RNA1509_55825, RNA815_14197}
8. MligTC455_19458 1300 27.09 Mlig455_007643

Neo: -

Age: logFC(26M/2M)=0.891

 ATP6AP2 0.956 - - - - - 0.956 Mlig455_007643 {REF} {Length: 3965} {Pfam: Renin receptor-like protein [PF07850.16, score=80.6]} {Human: ENSG00000182220, ATP6AP2, ATPase H+ transporting accessory protein 2, [RH, Score=73.2, Expect=3e-14]} {Mouse: ENSMUSG00000031007, Atp6ap2, ATPase, H+ transporting, lysosomal accessory protein 2, [RH, Score=73.6, Expect=3e-14]} {Dmel: FBgn0037671, VhaM8.9, Vacuolar H[+] ATPase M8.9 accessory subunit, [RH, Score=67.0, Expect=3e-12]} {Celegans: WBGene00010993, vha-20, Vacuolar H ATPase, [RH, Score=56.2, Expect=1e-08]} {Smed: dd_Smed_v6_1067_0_1, dd_Smed_v6_1067_0_1, [RH, Score=77.8, Expect=2e-18]} {RNA1509_44098} {RNA1310_8954} {RNA815_3484.1}
9. MligTC455_23552 539 11.23 Mlig455_020886

Neo: Irradiation

Age: -

 CSNK1G1 0.955 - - - - - 0.955 Mlig455_020886 {REF} {Length: 4055} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=100.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=55.0]; Fungal protein kinase [PF17667.3, score=29.4]} {Human: ENSG00000169118, CSNK1G1, casein kinase 1 gamma 1, [RH, Score=527, Expect=0.0]; ENSG00000151292, CSNK1G3, casein kinase 1 gamma 3, [RH, Score=524, Expect=0.0]} {Mouse: ENSMUSG00000032384, Csnk1g1, casein kinase 1, gamma 1, [RH, Score=535, Expect=0.0]; ENSMUSG00000073563, Csnk1g3, casein kinase 1, gamma 3, [RH, Score=520, Expect=0.0]} {Dmel: FBgn0250823, gish, gilgamesh, [RH, Score=515, Expect=0.0]} {Celegans: WBGene00013709, csnk-1, Casein kinase I gamma, [RH, Score=513, Expect=0.0]} {Smed: dd_Smed_v6_8508_0_2, dd_Smed_v6_8508_0_2, [RH, Score=462, Expect=1e-161]} {RNA1509_20026, RNA1509_31077} {RNA1310_19544.3, RNA1509_31077} {RNA1509_31077, RNA815_13120.1}
10. MligTC455_23551 537 11.19 Mlig455_007655

Neo: -

Age: -

 CSNK1G1 0.953 - - - - - 0.953 Mlig455_007655 {REF} {Length: 4258} {Pfam: Protein kinase domain [PF00069.27, score=100.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=55.0]; Fungal protein kinase [PF17667.3, score=29.3]} {Human: ENSG00000169118, CSNK1G1, casein kinase 1 gamma 1, [RH, Score=527, Expect=0.0]; ENSG00000151292, CSNK1G3, casein kinase 1 gamma 3, [RH, Score=521, Expect=0.0]} {Mouse: ENSMUSG00000032384, Csnk1g1, casein kinase 1, gamma 1, [RH, Score=535, Expect=0.0]; ENSMUSG00000073563, Csnk1g3, casein kinase 1, gamma 3, [RH, Score=518, Expect=0.0]} {Dmel: FBgn0250823, gish, gilgamesh, [RH, Score=508, Expect=4e-178]} {Celegans: WBGene00013709, csnk-1, Casein kinase I gamma, [RH, Score=512, Expect=0.0]} {Smed: dd_Smed_v6_8508_0_2, dd_Smed_v6_8508_0_2, [RH, Score=462, Expect=2e-161]} {RNA1509_16024, RNA1509_20026} {RNA1310_20582.1, RNA1509_16024} {RNA1509_16024, RNA815_13120.1}
11. MligTC455_49992 377 7.85 Mlig455_030016

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_030016 {REF} {Length: 5191} {TRANSSPLICED} {RNA1509_16544, RNA1509_31079, RNA1509_38970} {RNA1310_6208.1, RNA1509_16544, RNA1509_31079, RNA1509_38970} {RNA1509_16544, RNA1509_31079, RNA1509_38970, RNA815_18742}
12. MligTC455_46012 1732 36.08 Mlig455_034541, Mlig455_034582, Mlig455_070433

Neo: -

Age: -

 PI4K2B 0.951 - - - - - 0.951

Mlig455_034541 {REF} {Length: 3994} {TRANSSPLICED} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=185.8]} {Human: ENSG00000038210, PI4K2B, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=494, Expect=4e-172]; ENSG00000281028, AC104662.2, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=493, Expect=7e-173]; ENSG00000155252, PI4K2A, phosphatidylinositol 4-kinase type 2 alpha, [RH, Score=483, Expect=9e-168]} {Mouse: ENSMUSG00000029186, Pi4k2b, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=497, Expect=1e-173]; ENSMUSG00000025178, Pi4k2a, phosphatidylinositol 4-kinase type 2 alpha, [RH, Score=478, Expect=7e-166]} {Dmel: FBgn0037339, Pi4KIIalpha, [Score=369, Expect=3e-120]} {Celegans: WBGene00022501, ZC8.6, [RH, Score=404, Expect=9e-136]} {Smed: dd_Smed_v6_10985_0_1, dd_Smed_v6_10985_0_1, [RH, Score=496, Expect=1e-173]} {RNA1509_16350} {RNA1310_17970} {RNA815_2446}

Mlig455_034582 {REF} {Length: 4206} {TRANSSPLICED} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=160.8]} {Human: ENSG00000038210, PI4K2B, phosphatidylinositol 4-kinase type 2 beta, [Score=454, Expect=2e-156]; ENSG00000281028, AC104662.2, phosphatidylinositol 4-kinase type 2 beta, [Score=452, Expect=2e-157]; ENSG00000155252, PI4K2A, phosphatidylinositol 4-kinase type 2 alpha, [Score=447, Expect=6e-154]} {Mouse: ENSMUSG00000029186, Pi4k2b, phosphatidylinositol 4-kinase type 2 beta, [Score=460, Expect=3e-159]; ENSMUSG00000025178, Pi4k2a, phosphatidylinositol 4-kinase type 2 alpha, [Score=442, Expect=3e-152]} {Dmel: FBgn0037339, Pi4KIIalpha, [Score=298, Expect=3e-93]} {Celegans: WBGene00022501, ZC8.6, [Score=369, Expect=3e-122]} {Smed: dd_Smed_v6_10985_0_1, dd_Smed_v6_10985_0_1, [Score=459, Expect=2e-159]} {RNA1509_47380} {RNA1310_17970} {RNA815_2446}

Mlig455_070433 {REF} {Length: 3997} {TRANSSPLICED} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=185.1]} {Human: ENSG00000038210, PI4K2B, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=494, Expect=7e-172]; ENSG00000281028, AC104662.2, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=491, Expect=2e-172]; ENSG00000155252, PI4K2A, phosphatidylinositol 4-kinase type 2 alpha, [RH, Score=482, Expect=2e-167]} {Mouse: ENSMUSG00000029186, Pi4k2b, phosphatidylinositol 4-kinase type 2 beta, [RH, Score=496, Expect=5e-173]; ENSMUSG00000025178, Pi4k2a, phosphatidylinositol 4-kinase type 2 alpha, [RH, Score=477, Expect=1e-165]} {Dmel: FBgn0037339, Pi4KIIalpha, [Score=368, Expect=4e-120]} {Celegans: WBGene00022501, ZC8.6, [RH, Score=404, Expect=1e-135]} {Smed: dd_Smed_v6_10985_0_1, dd_Smed_v6_10985_0_1, [RH, Score=493, Expect=2e-172]} {RNA1509_16350} {RNA1310_17970, RNA1509_16350} {RNA1509_16350, RNA815_2446}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA