M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36100

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36100 427 8.89 Mlig455_031135

Neo: -

Age: Down-Up-Up

 ACOT9 Mlig455_031135 {REF} {Length: 3170} {TRANSSPLICED} {Human: ENSG00000123130, ACOT9, acyl-CoA thioesterase 9, [Score=160, Expect=9e-42]} {Mouse: ENSMUSG00000025287, Acot9, acyl-CoA thioesterase 9, [Score=160, Expect=3e-42]; ENSMUSG00000047565, Acot10, acyl-CoA thioesterase 10, [Score=160, Expect=4e-42]} {Dmel: FBgn0039855, CG1638, [Score=92.8, Expect=1e-19]} {Celegans: WBGene00019015, F57F4.1, [Score=56.6, Expect=5e-08]} {RNA1509_11448} {RNA1310_8565.1} {RNA815_3024}

Cumulative graph for MligTC455_36100

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.01 3.457 0.22382 0.86713
RegionR2 0.141 3.457 0.78738 1.00000
RegionR3 -0.007 3.457 0.99500 1.00000
RegionR4 0.196 3.457 0.70007 0.98889
RegionR5 0.259 3.457 0.54067 0.90362
RegionR6 -0.344 3.457 0.52240 1.00000
RegionR7 0.344 3.457 0.57137 1.00000
RegionR8 1.42 3.457 0.02460 0.30537

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.092 3.457 0.39601 1.00000
RegenerationR2 0.35 3.457 0.33413 0.77038
RegenerationR3 0.138 3.457 0.75380 0.96586
RegenerationR4 -0.166 3.457 0.70647 0.95568
RegenerationR5 0.054 3.457 0.89070 1.00000
RegenerationR6 0.754 3.457 0.11356 0.41493
RegenerationBL 0.481 3.457 0.31805 0.68484
RegenerationTP -0.724 3.457 0.21267 0.65567


Genes with expression patterns similar to MligTC455_36100

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36100 427 8.89 Mlig455_031135

Neo: -

Age: Down-Up-Up

 ACOT9 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_031135 {REF} {Length: 3170} {TRANSSPLICED} {Human: ENSG00000123130, ACOT9, acyl-CoA thioesterase 9, [Score=160, Expect=9e-42]} {Mouse: ENSMUSG00000025287, Acot9, acyl-CoA thioesterase 9, [Score=160, Expect=3e-42]; ENSMUSG00000047565, Acot10, acyl-CoA thioesterase 10, [Score=160, Expect=4e-42]} {Dmel: FBgn0039855, CG1638, [Score=92.8, Expect=1e-19]} {Celegans: WBGene00019015, F57F4.1, [Score=56.6, Expect=5e-08]} {RNA1509_11448} {RNA1310_8565.1} {RNA815_3024}
2. MligTC455_36099 380 7.91 Mlig455_031102

Neo: -

Age: -

 2.515 - - - 0.959 0.854 0.702 Mlig455_031102 {REF} {Length: 2608} {RNA1509_11448} {RNA1310_8565.1} {RNA815_3024}
3. MligTC455_35064 2048 42.66 Mlig455_035858

Neo: -

Age: logFC(26M/2M)=-0.186

 MPP6 2.376 - 0.723 - 0.952 - 0.701 Mlig455_035858 {REF} {Length: 2803} {TRANSSPLICED} {Pfam: Guanylate kinase [PF00625.23, score=130.3]; Variant SH3 domain [PF07653.19, score=34.5]; SH3 domain [PF00018.30, score=31.6]; PDZ domain [PF00595.26, score=29.2]; PDZ domain [PF17820.3, score=24.9]; Variant SH3 domain [PF14604.8, score=24.6]; AAA domain [PF13401.8, score=21.4]; AAA ATPase domain [PF13191.8, score=20.0]} {Human: ENSG00000105926, MPP6, membrane palmitoylated protein 6, [RH, Score=338, Expect=1e-109]} {Mouse: ENSMUSG00000038388, Mpp6, membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6), [Score=343, Expect=2e-110]; ENSMUSG00000017314, Mpp2, membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2), [Score=341, Expect=3e-109]} {Dmel: FBgn0250785, vari, varicose, [Score=311, Expect=4e-97]} {Celegans: WBGene00002991, lin-2, [Score=285, Expect=2e-87]} {Smed: dd_Smed_v6_5287_0_1, dd_Smed_v6_5287_0_1, [RH, Score=410, Expect=1e-135]} {RNA1509_14924, RNA1509_2984} {RNA1310_5044, RNA1509_14924, RNA1509_2984} {RNA1509_14924, RNA1509_2984, RNA815_1589}
4. MligTC455_39191 1279 26.64 Mlig455_029227, Mlig455_035635

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.063/0.03136

 1.794 - - 0.817 0.977 - -

Mlig455_029227 {REF} {Length: 3421} {Pfam: Commissureless [PF15957.7, score=19.1]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [Score=52.0, Expect=4e-08]} {RNA1509_9826} {RNA1310_20425, RNA1509_9826} {RNA1509_9826, RNA815_8605.1}

Mlig455_035635 {REF} {Length: 3054} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=26.0]; Commissureless [PF15957.7, score=19.4]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [RH, Score=53.1, Expect=2e-08]} {RNA1509_9826} {RNA1310_22078} {RNA815_8605.2}
5. MligTC455_44710 1043 21.73 Mlig455_059157, Mlig455_065533

Neo: -

Age: Down-Up-Down

 CAPN9 1.708 - - - 0.962 - 0.746

Mlig455_059157 {REF} {Length: 4269} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=343.7]; Calpain large subunit, domain III [PF01067.24, score=126.9]; EF hand [PF00036.34, score=25.4]; EF-hand domain [PF13405.8, score=25.2]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=452, Expect=1e-146]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=446, Expect=5e-144]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=457, Expect=7e-146]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=365, Expect=5e-113]} {Smed: dd_Smed_v6_4499_0_1, dd_Smed_v6_4499_0_1, [RH, Score=491, Expect=8e-160]} {RNA1509_11645} {RNA1310_4797.1} {RNA815_16849}

Mlig455_065533 {REF} {Length: 3264} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=340.7]; Calpain large subunit, domain III [PF01067.24, score=129.6]; EF-hand domain [PF13405.8, score=27.7]; EF hand [PF00036.34, score=27.3]; EF-hand domain pair [PF13499.8, score=20.5]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=460, Expect=1e-152]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=455, Expect=7e-151]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=449, Expect=1e-145]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=363, Expect=2e-115]} {Smed: dd_Smed_v6_4499_0_1, dd_Smed_v6_4499_0_1, [RH, Score=492, Expect=2e-163]} {RNA1509_11645} {RNA1310_4797.1, RNA1509_11645} {RNA1509_11645, RNA815_16849}
6. MligTC455_50108 1530 31.88 Mlig455_030660

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.538

 TRPM3 1.663 - - - 0.953 0.710 - Mlig455_030660 {REF} {Length: 3971} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.9]; Ankyrin repeats (many copies) [PF13637.8, score=67.2]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.7]; Ankyrin repeat [PF00023.32, score=45.3]; Ankyrin repeats (many copies) [PF13857.8, score=43.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=148, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=81.6, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096} {RNA1310_2778.1} {RNA815_765}
7. MligTC455_41936 1214 25.28 Mlig455_010436

Neo: -

Age: -

Region-enriched R8: 1.436/0.01364
Region-enriched R7: 1.262/0.00860

 0.968 - - - 0.968 - - Mlig455_010436 {REF} {Length: 5050} {RNA1509_10788, RNA1509_21129, RNA1509_21353} {RNA1310_19529.1, RNA1509_10788, RNA1509_21129, RNA1509_21353} {RNA1509_10788, RNA1509_21129, RNA1509_21353, RNA815_12211.1}
8. MligTC455_33635 324 6.75 Mlig455_053682

Neo: -

Age: Up-Down-Up

 RALGAPB 0.957 - - - 0.957 - - Mlig455_053682 {REF} {Length: 7650} {Human: ENSG00000170471, RALGAPB, Ral GTPase activating protein non-catalytic beta subunit, [RH, Score=248, Expect=2e-66]} {Mouse: ENSMUSG00000027652, Ralgapb, Ral GTPase activating protein, beta subunit (non-catalytic), [RH, Score=249, Expect=1e-66]} {Dmel: FBgn0085437, CG34408, [RH, Score=258, Expect=3e-70]} {Celegans: WBGene00008430, hgap-2, Heterodimeric GTPase Activating Protein subunit, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_8678_0_1, dd_Smed_v6_8678_0_1, [RH, Score=249, Expect=7e-67]} {RNA1509_58977} {RNA1310_7211.1} {RNA815_712.1}
9. MligTC455_22331 559 11.64 Mlig455_051905

Neo: -

Age: logFC(26M/2M)=-0.323

Regeneration-upregulated BL: 1.773

Regeneration-enriched BL: 1.773

 TRPM3 0.956 - - - 0.956 - - Mlig455_051905 {REF} {Length: 4160} {Pfam: Ion transport protein [PF00520.33, score=53.4]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=125, Expect=6e-29]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=125, Expect=3e-29]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=55.1, Expect=2e-07]} {Celegans: WBGene00000425, ced-11, [RH, Score=60.5, Expect=3e-09]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=214, Expect=7e-59]} {RNA1509_4234, RNA1509_53275} {RNA1310_2153, RNA1509_53275} {RNA1509_53275, RNA815_602}
10. MligTC455_53885 430 8.96 Mlig455_068251

Neo: -

Age: logFC(26M/2M)=-0.283

 STARD10 0.956 - - - 0.956 - - Mlig455_068251 {REF} {Length: 2447} {TRANSSPLICED} {Pfam: START domain [PF01852.21, score=107.2]} {Human: ENSG00000214530, STARD10, StAR related lipid transfer domain containing 10, [Score=207, Expect=2e-65]} {Mouse: ENSMUSG00000030688, Stard10, START domain containing 10, [Score=209, Expect=3e-66]} {Celegans: WBGene00012127, T28D6.7, [RH, Score=217, Expect=3e-69]} {Smed: dd_Smed_v6_498_0_1, dd_Smed_v6_498_0_1, [RH, Score=296, Expect=6e-101]} {RNA1509_25193, RNA1509_58419} {RNA1310_26702.1, RNA1509_25193, RNA1509_58419} {RNA1509_25193, RNA1509_58419, RNA815_13572.1}
11. MligTC455_42699 1094 22.78 Mlig455_014358

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.568

Region-enriched R2: 1.315/0.02072

 YWHAE 0.955 - - - - 0.955 - Mlig455_014358 {REF} {Length: 1925} {Pfam: 14-3-3 protein [PF00244.22, score=229.3]} {Human: ENSG00000274474, YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon, [Score=275, Expect=3e-93]; ENSG00000108953, YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon, [Score=275, Expect=3e-93]} {Mouse: ENSMUSG00000020849, Ywhae, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide, [Score=275, Expect=2e-93]} {Dmel: FBgn0020238, 14-3-3epsilon, [Score=260, Expect=7e-88]} {Celegans: WBGene00001502, ftt-2, 14-3-3-like protein 2, [Score=208, Expect=1e-67]} {Smed: dd_Smed_v6_1702_0_1, dd_Smed_v6_1702_0_1, [Score=248, Expect=3e-83]} {RNA1509_43335} {RNA1310_15023.1} {RNA815_5579}
12. MligTC455_42862 2771 57.72 Mlig455_028463, Mlig455_028486

Neo: -

Age: logFC(26M/2M)=-0.287

 0.955 - - - 0.955 - -

Mlig455_028463 {REF} {Length: 1949} {RNA1509_18977} {RNA1310_15274.1} {RNA815_16173}

Mlig455_028486 {REF} {Length: 2011} {RNA1509_18977, RNA1509_47578} {RNA1310_15274.1, RNA1509_18977, RNA1509_47578} {RNA1509_18977, RNA1509_47578, RNA815_12926}
13. MligTC455_49675 731 15.24 Mlig455_010609

Neo: -

Age: Down-Up-Up

 SHF 0.952 - - - 0.952 - - Mlig455_010609 {REF} {Length: 3411} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=38.9]} {Human: ENSG00000138606, SHF, Src homology 2 domain containing F, [Score=92.0, Expect=7e-21]; ENSG00000105251, SHD, Src homology 2 domain containing transforming protein D, [Score=91.7, Expect=5e-21]} {Mouse: ENSMUSG00000033256, Shf, Src homology 2 domain containing F, [Score=90.9, Expect=4e-21]} {Dmel: FBgn0264542, hwt, heavyweight, [Score=107, Expect=4e-26]} {Smed: dd_Smed_v6_2710_0_1, dd_Smed_v6_2710_0_1, [Score=94.4, Expect=5e-22]} {RNA1509_25407, RNA1509_43439} {RNA1310_33381, RNA1509_25407, RNA1509_43439} {RNA1509_25407, RNA1509_43439, RNA815_11332}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA