Data search
Results for MligTC455_36150
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_36150 | 138 | 2.88 | Mlig455_069006 | Neo: - Age: - |
RTL1 | Mlig455_069006 {REF} {Length: 3820} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=52.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=42.5]; Aspartyl protease [PF13650.8, score=35.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=50.4, Expect=1e-05]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=159, Expect=1e-40]} {RNA1310_32537} {RNA815_54709} |
Cumulative graph for MligTC455_36150
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -3.547 | 2.389 | 1.00000 | 1.00000 | |
| RegionR2 | 0.908 | 2.389 | 0.45797 | 0.84541 | |
| RegionR3 | 1.929 | 2.389 | 0.06487 | 0.44939 | |
| RegionR4 | 1.488 | 2.389 | 0.22700 | 0.51935 | |
| RegionR5 | 1.611 | 2.389 | 0.11939 | 0.34527 | |
| RegionR6 | 0.922 | 2.389 | 0.42240 | 0.98922 | |
| RegionR7 | 0.967 | 2.389 | 0.46880 | 1.00000 | |
| RegionR8 | -4.278 | 2.389 | 1.00000 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.843 | 2.389 | 0.99993 | 1.00000 | |
| RegenerationR2 | 0.039 | 2.389 | 0.95626 | 1.00000 | |
| RegenerationR3 | -0.95 | 2.389 | 0.21921 | 0.65554 | |
| RegenerationR4 | 0.699 | 2.389 | 0.40925 | 0.81977 | |
| RegenerationR5 | 0.451 | 2.389 | 0.52518 | 0.87214 | |
| RegenerationR6 | 0.914 | 2.389 | 0.26358 | 0.61342 | |
| RegenerationBL | 1.711 | 2.389 | 0.27947 | 0.64023 | |
| RegenerationTP | 1.786 | 2.389 | 0.41094 | 0.83752 |
Genes with expression patterns similar to MligTC455_36150
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_36150 | 138 | 2.88 | Mlig455_069006 | Neo: - Age: - |
RTL1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_069006 {REF} {Length: 3820} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=52.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=42.5]; Aspartyl protease [PF13650.8, score=35.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=50.4, Expect=1e-05]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=159, Expect=1e-40]} {RNA1310_32537} {RNA815_54709} |
| 2. | MligTC455_43978 | 1071 | 22.31 | Mlig455_029823 | Neo: Irradiation Age: logFC(26M/2M)=0.768 Region-enriched R5: 1.073/0.00005 |
GRAMD1A | 1.737 | - | - | - | - | 0.958 | 0.779 | Mlig455_029823 {REF} {Length: 3003} {Pfam: GRAM domain [PF02893.22, score=54.8]} {Human: ENSG00000089351, GRAMD1A, GRAM domain containing 1A, [Score=62.8, Expect=4e-10]; ENSG00000155324, GRAMD2B, GRAM domain containing 2B, [Score=62.8, Expect=3e-10]} {Mouse: ENSMUSG00000001700, Gramd3, GRAM domain containing 3, [Score=62.4, Expect=3e-10]; ENSMUSG00000001248, Gramd1a, GRAM domain containing 1A, [Score=60.5, Expect=1e-09]} {Smed: dd_Smed_v6_8544_1_3, dd_Smed_v6_8544_1_3, [Score=63.5, Expect=8e-12]} {RNA1509_12300, RNA1509_24303, RNA1509_25944, RNA1509_27569, RNA1509_35012} {RNA1310_19042, RNA1509_12300, RNA1509_24303, RNA1509_25944, RNA1509_27569, RNA1509_35012} {RNA1509_12300, RNA1509_24303, RNA1509_25944, RNA1509_27569, RNA1509_35012, RNA815_8450.1} |
| 3. | MligTC455_50819 | 291 | 6.07 | Mlig455_060356 | Neo: - Age: - |
0.976 | - | - | - | - | 0.976 | - | Mlig455_060356 {REF} {Length: 2286} {TRANSSPLICED} {Smed: dd_Smed_v6_5953_0_1, dd_Smed_v6_5953_0_1, [RH, Score=92.0, Expect=2e-21]} {RNA1509_34165} {RNA1310_28074.2} {RNA815_19770} | |
| 4. | MligTC455_36746 | 584 | 12.16 | Mlig455_010816 | Neo: - Age: - |
SMU1 | 0.956 | - | - | - | - | 0.956 | - | Mlig455_010816 {REF} {Length: 4670} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=125.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=65.4]; LisH-like dimerisation domain [PF17814.3, score=44.8]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=39.6]; Nucleoporin Nup120/160 [PF11715.10, score=33.1]} {Human: ENSG00000122692, SMU1, SMU1, DNA replication regulator and spliceosomal factor, [RH, Score=828, Expect=0.0]} {Mouse: ENSMUSG00000028409, Smu1, smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans), [RH, Score=828, Expect=0.0]} {Dmel: FBgn0038666, Smu1, Smu1 spliceosomal factor, [RH, Score=803, Expect=0.0]} {Celegans: WBGene00004895, smu-1, SMU-1; Suppressor of Mec and Unc defects, [RH, Score=667, Expect=0.0]} {Smed: dd_Smed_v6_3438_0_1, dd_Smed_v6_3438_0_1, [RH, Score=790, Expect=0.0]} {RNA1509_23947, RNA1509_35954} {RNA1310_16357, RNA1509_23947, RNA1509_35954} {RNA1509_23947, RNA1509_35954, RNA815_7592} |
Berezikov Lab - 2020-2021 © ERIBA