M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36502

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36502 111 2.30 Mlig455_029861

Neo: -

Age: -

 Mlig455_029861 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_6797} {RNA1310_123744} {RNA815_56046}

Cumulative graph for MligTC455_36502

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.314 2.125 0.41060 1.00000
RegionR2 1.357 2.125 0.23900 0.61341
RegionR3 0.707 2.125 0.46531 0.97326
RegionR4 0.839 2.125 0.46007 0.78802
RegionR5 0.137 2.125 0.80088 1.00000
RegionR6 0.068 2.125 0.83501 1.00000
RegionR7 0.532 2.125 0.64778 1.00000
RegionR8 0.675 2.125 0.60789 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.68 2.125 0.99995 1.00000
RegenerationR2 -0.651 2.125 0.30843 0.74886
RegenerationR3 -0.16 2.125 0.83892 0.99389
RegenerationR4 -0.112 2.125 0.88977 1.00000
RegenerationR5 0.726 2.125 0.28949 0.71736
RegenerationR6 -0.979 2.125 0.32445 0.67072
RegenerationBL -4.272 2.125 0.08086 0.33226
RegenerationTP 0.333 2.125 0.75118 1.00000


Genes with expression patterns similar to MligTC455_36502

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36502 111 2.3 Mlig455_029861

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_029861 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_6797} {RNA1310_123744} {RNA815_56046}
2. MligTC455_36503 190 3.96 Mlig455_029923

Neo: -

Age: -

 SLC35B3 5.435 0.887 0.838 0.974 0.954 0.810 0.972 Mlig455_029923 {REF} {Length: 1631} {Pfam: UAA transporter family [PF08449.13, score=110.8]; EamA-like transporter family [PF00892.22, score=18.9]} {Human: ENSG00000124786, SLC35B3, solute carrier family 35 member B3, [Score=169, Expect=9e-51]} {Mouse: ENSMUSG00000021432, Slc35b3, solute carrier family 35, member B3, [Score=166, Expect=4e-50]} {Dmel: FBgn0036695, Papst2, PAPS transporter 2, [Score=155, Expect=6e-46]} {Celegans: WBGene00018827, pst-2, Adenosine 3'-phospho 5'-phosphosulfate transporter 2, [Score=149, Expect=2e-45]} {Smed: dd_Smed_v6_8200_0_1, dd_Smed_v6_8200_0_1, [Score=179, Expect=2e-55]} {RNA1509_6797} {RNA1310_11349} {RNA815_6248.2}
3. MligTC455_36501 288 5.99 Mlig455_029768

Neo: -

Age: -

 SLC35B3 3.458 0.900 0.806 0.972 - 0.780 - Mlig455_029768 {REF} {Length: 2346} {TRANSSPLICED} {Pfam: UAA transporter family [PF08449.13, score=262.5]; Cytochrome c oxidase subunit VIc [PF02937.17, score=34.5]; EamA-like transporter family [PF00892.22, score=20.4]} {Human: ENSG00000124786, SLC35B3, solute carrier family 35 member B3, [RH, Score=355, Expect=5e-118]} {Mouse: ENSMUSG00000021432, Slc35b3, solute carrier family 35, member B3, [RH, Score=363, Expect=2e-121]} {Dmel: FBgn0036695, Papst2, PAPS transporter 2, [RH, Score=330, Expect=5e-109]} {Celegans: WBGene00018827, pst-2, Adenosine 3'-phospho 5'-phosphosulfate transporter 2, [RH, Score=306, Expect=7e-100]} {Smed: dd_Smed_v6_8200_0_1, dd_Smed_v6_8200_0_1, [RH, Score=349, Expect=6e-117]} {RNA1509_6797} {RNA1310_11349} {RNA815_6248.2}
4. MligTC455_27781 48 1.01 Mlig455_007155

Neo: -

Age: -

 SLC47A1 1.767 - - 0.950 - - 0.817 Mlig455_007155 {REF} {Length: 3222} {TRANSSPLICED} {Pfam: MatE [PF01554.20, score=215.3]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [RH, Score=339, Expect=6e-106]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [RH, Score=345, Expect=2e-108]} {Smed: dd_Smed_v6_7241_0_1, dd_Smed_v6_7241_0_1, [Score=400, Expect=5e-129]} {RNA1509_25045} {RNA1310_14869.1, RNA1509_25045} {RNA1509_25045, RNA815_9644}
5. MligTC455_43839 53 1.1 Mlig455_027984

Neo: -

Age: Down-Up-Up

 SYT9 1.767 - - 0.964 0.803 - - Mlig455_027984 {REF} {Length: 2879} {Pfam: C2 domain [PF00168.32, score=117.5]} {Human: ENSG00000170743, SYT9, synaptotagmin 9, [Score=194, Expect=3e-56]} {Mouse: ENSMUSG00000062542, Syt9, synaptotagmin IX, [Score=193, Expect=5e-56]} {Dmel: FBgn0261090, Sytbeta, Synaptotagmin beta, [RH, Score=187, Expect=3e-53]} {Celegans: WBGene00004923, snt-3, SyNapTotagmin, [Score=152, Expect=8e-43]} {Smed: dd_Smed_v6_19328_0_1, dd_Smed_v6_19328_0_1, [RH, Score=163, Expect=1e-45]} {RNA1509_57021} {RNA1310_11363, RNA1509_57021} {RNA1509_57021, RNA815_14366}
6. MligTC455_37702 80 1.67 Mlig455_019499, Mlig455_044124, Mlig455_052495, Mlig455_066904

Neo: -

Age: Up-Down-Up

 AGRN 1.687 - - 0.957 0.730 - -

Mlig455_019499 {REF} {Length: 3519} {Pfam: Laminin G domain [PF02210.26, score=157.1]; Laminin G domain [PF00054.25, score=153.3]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=33.9]; EGF-like domain [PF00008.29, score=32.9]} {Human: ENSG00000188157, AGRN, agrin, [RH, Score=170, Expect=8e-43]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [RH, Score=170, Expect=6e-43]} {Dmel: FBgn0034070, SP2353, [RH, Score=206, Expect=1e-54]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [RH, Score=274, Expect=5e-80]} {RNA1310_74942} {RNA815_40361}

Mlig455_044124 {REF} {Length: 914} {RNA1310_41563}

Mlig455_052495 {REF} {Length: 1397} {Pfam: THAP domain [PF05485.14, score=29.4]} {RNA1310_37069.2} {RNA815_27767}

Mlig455_066904 {REF} {Length: 4733} {Pfam: Laminin G domain [PF02210.26, score=157.1]; Laminin G domain [PF00054.25, score=153.3]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=33.9]; EGF-like domain [PF00008.29, score=32.9]} {Human: ENSG00000188157, AGRN, agrin, [RH, Score=170, Expect=8e-43]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [RH, Score=170, Expect=6e-43]} {Dmel: FBgn0034070, SP2353, [RH, Score=206, Expect=1e-54]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [RH, Score=274, Expect=5e-80]} {RNA1310_74942} {RNA815_40361}
7. MligTC455_48696 89 1.86 Mlig455_008457

Neo: -

Age: logFC(26M/2M)=2.804

 0.966 - - - - 0.966 - Mlig455_008457 {REF} {Length: 1584} {RNA1509_5317} {RNA1310_34053} {RNA815_19081}
8. MligTC455_46940 74 1.54 Mlig455_050316

Neo: -

Age: Up-Down-Down

 PDZRN4 0.964 - - 0.964 - - - Mlig455_050316 {REF} {Length: 2835} {Pfam: PDZ domain [PF17820.3, score=82.7]; PDZ domain [PF00595.26, score=70.7]; PDZ domain [PF13180.8, score=31.4]} {Human: ENSG00000165966, PDZRN4, PDZ domain containing ring finger 4, [Score=96.3, Expect=6e-20]} {Mouse: ENSMUSG00000036218, Pdzrn4, PDZ domain containing RING finger 4, [Score=97.8, Expect=2e-20]} {Dmel: FBgn0024728, Slip1, [Score=70.1, Expect=5e-12]} {Celegans: WBGene00016846, C50F7.6, [Score=70.5, Expect=8e-13]} {Smed: dd_Smed_v6_4699_0_1, dd_Smed_v6_4699_0_1, [RH, Score=81.6, Expect=5e-16]} {RNA1310_10358} {RNA815_38642}
9. MligTC455_48261 109 2.27 Mlig455_037581

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_037581 {REF} {Length: 2435} {TRANSSPLICED} {RNA1509_49883} {RNA1310_18334.2} {RNA815_7372}
10. MligTC455_27234 67 1.4 Mlig455_019927

Neo: -

Age: -

 SCP2 0.957 - - 0.957 - - - Mlig455_019927 {REF} {Length: 2733} {TRANSSPLICED} {Pfam: Thiolase, N-terminal domain [PF00108.25, score=32.5]; Thiolase, C-terminal domain [PF02803.20, score=30.3]} {Human: ENSG00000116171, SCP2, sterol carrier protein 2, [Score=256, Expect=7e-79]} {Mouse: ENSMUSG00000028603, Scp2, sterol carrier protein 2, liver, [Score=266, Expect=7e-83]} {Dmel: FBgn0015808, ScpX, Sterol carrier protein X-related thiolase, [Score=292, Expect=4e-93]} {Celegans: WBGene00013284, daf-22, Non-specific lipid-transfer protein-like 2, [Score=228, Expect=4e-70]} {Smed: dd_Smed_v6_2892_0_1, dd_Smed_v6_2892_0_1, [Score=268, Expect=6e-86]} {RNA1509_28112} {RNA1310_20701.1} {RNA815_12561}
11. MligTC455_32066 127 2.64 Mlig455_048493

Neo: -

Age: Up-Down-Down

 SLC17A9 0.957 - - - - - 0.957 Mlig455_048493 {REF} {Length: 5594} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=149.1]} {Human: ENSG00000101194, SLC17A9, solute carrier family 17 member 9, [RH, Score=303, Expect=1e-97]} {Mouse: ENSMUSG00000023393, Slc17a9, solute carrier family 17, member 9, [RH, Score=301, Expect=4e-97]} {Dmel: FBgn0025684, MFS18, Major Facilitator Superfamily Transporter 18, [Score=300, Expect=1e-96]} {Celegans: WBGene00010758, vnut-1, Vesicular NUcleotide Transporte, [RH, Score=313, Expect=5e-102]} {Smed: dd_Smed_v6_1326_0_1, dd_Smed_v6_1326_0_1, [Score=394, Expect=3e-133]} {RNA1509_17119} {RNA1310_13718, RNA1509_17119} {RNA1509_17119, RNA815_7003}
12. MligTC455_37279 73 1.53 Mlig455_026160

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_026160 {REF} {Length: 3746} {TRANSSPLICED} {RNA1509_51121} {RNA1310_35256} {RNA815_17838}
13. MligTC455_31045 92 1.92 Mlig455_035237, Mlig455_035281

Neo: -

Age: Up-Down-Up

Region-enriched R2: 4.601/0.03681

 AJM1 0.956 - - 0.956 - - -

Mlig455_035237 {REF} {Length: 5249} {Human: ENSG00000232434, AJM1, apical junction component 1 homolog, [Score=123, Expect=1e-27]} {Mouse: ENSMUSG00000029419, Ajm1, apical junction component 1, [Score=123, Expect=7e-28]} {Dmel: FBgn0261802, CG42748, [Score=84.7, Expect=3e-16]} {Smed: dd_Smed_v6_11689_0_1, dd_Smed_v6_11689_0_1, [Score=82.4, Expect=6e-16]} {RNA1509_48508} {RNA1310_3708} {RNA815_12391}

Mlig455_035281 {REF} {Length: 5297} {Human: ENSG00000232434, AJM1, apical junction component 1 homolog, [RH, Score=124, Expect=4e-28]} {Mouse: ENSMUSG00000029419, Ajm1, apical junction component 1, [RH, Score=125, Expect=2e-28]} {Dmel: FBgn0261802, CG42748, [Score=86.3, Expect=1e-16]} {Smed: dd_Smed_v6_11689_0_1, dd_Smed_v6_11689_0_1, [Score=81.3, Expect=1e-15]} {RNA1509_48508} {RNA1310_3708} {RNA815_12391}
14. MligTC455_16246 45 0.95 Mlig455_036572

Neo: -

Age: Down-Up-Down

 0.955 - - 0.955 - - - Mlig455_036572 {REF} {Length: 810} {RNA1310_54790} {RNA815_37149}
15. MligTC455_19226 225 4.7 Mlig455_044480

Neo: -

Age: -

 SMARCC2 0.954 - - - - - 0.954 Mlig455_044480 {REF} {Length: 4043} {Pfam: SWIRM domain [PF04433.19, score=71.7]; SWIRM-associated region 1 [PF16495.7, score=49.2]; Myb-like DNA-binding domain [PF00249.33, score=40.4]; Myb-like DNA-binding domain [PF13921.8, score=19.6]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=193, Expect=3e-50]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=192, Expect=5e-50]; ENSMUSG00000032481, Smarcc1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, [Score=183, Expect=4e-47]} {Dmel: FBgn0002783, mor, moira, [Score=176, Expect=5e-45]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=224, Expect=6e-62]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=193, Expect=1e-50]} {RNA1509_21623} {RNA1310_9539.1} {RNA815_24164}
16. MligTC455_02552 131 2.72 Mlig455_057381, Mlig455_059553

Neo: -

Age: -

Region-enriched R4: 4.546/0.01568

 0.953 - - 0.953 - - -

Mlig455_057381 {REF} {Length: 732} {NoTransDecoderORF} {RNA1310_74178} {RNA815_37610}

Mlig455_059553 {REF} {Length: 709} {NoTransDecoderORF} {RNA1310_74178} {RNA815_37610}
17. MligTC455_14464 38 0.79 Mlig455_052668

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_052668 {REF} {Length: 340} {RNA1509_36365} {RNA1310_19238} {RNA815_10291}
18. MligTC455_18417 313 6.52 Mlig455_053948, Mlig455_060585

Neo: -

Age: -

 0.953 - - 0.953 - - -

Mlig455_053948 {REF} {Length: 594} {NoTransDecoderORF} {RNA1509_52816} {RNA1310_3937} {RNA815_30143}

Mlig455_060585 {REF} {Length: 562} {NoTransDecoderORF} {RNA1509_52816} {RNA1310_3937} {RNA815_30143}
19. MligTC455_20360 45 0.94 Mlig455_020098

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_020098 {REF} {Length: 2113} {RNA1509_51474} {RNA1310_43070} {RNA815_32077}
20. MligTC455_02138 24 0.5 Mlig455_033229

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_033229 {REF} {Length: 823} {NoTransDecoderORF} {RNA1509_51350} {RNA1310_73607.2} {RNA815_19357}
21. MligTC455_48490 40 0.84 Mlig455_020090

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_020090 {REF} {Length: 2619} {RNA1310_71062} {RNA815_63441}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA