Data search
Results for MligTC455_19226
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_19226 | 225 | 4.70 | Mlig455_044480 | Neo: - Age: - |
SMARCC2 | Mlig455_044480 {REF} {Length: 4043} {Pfam: SWIRM domain [PF04433.19, score=71.7]; SWIRM-associated region 1 [PF16495.7, score=49.2]; Myb-like DNA-binding domain [PF00249.33, score=40.4]; Myb-like DNA-binding domain [PF13921.8, score=19.6]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=193, Expect=3e-50]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=192, Expect=5e-50]; ENSMUSG00000032481, Smarcc1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, [Score=183, Expect=4e-47]} {Dmel: FBgn0002783, mor, moira, [Score=176, Expect=5e-45]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=224, Expect=6e-62]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=193, Expect=1e-50]} {RNA1509_21623} {RNA1310_9539.1} {RNA815_24164} |
Cumulative graph for MligTC455_19226
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.131 | 2.902 | 0.45414 | 1.00000 | |
| RegionR2 | 1.116 | 2.902 | 0.08453 | 0.35714 | |
| RegionR3 | -0.285 | 2.902 | 0.54753 | 1.00000 | |
| RegionR4 | -0.991 | 2.902 | 0.13401 | 0.37165 | |
| RegionR5 | -0.043 | 2.902 | 0.89861 | 1.00000 | |
| RegionR6 | -0.401 | 2.902 | 0.42926 | 0.99330 | |
| RegionR7 | 0.917 | 2.902 | 0.14814 | 0.71589 | |
| RegionR8 | 0.817 | 2.902 | 0.30970 | 0.94204 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -3.168 | 2.902 | 0.61635 | 1.00000 | |
| RegenerationR2 | 0.411 | 2.902 | 0.42712 | 0.83205 | |
| RegenerationR3 | 0.409 | 2.902 | 0.50419 | 0.85880 | |
| RegenerationR4 | 0.624 | 2.902 | 0.31302 | 0.75256 | |
| RegenerationR5 | 0.48 | 2.902 | 0.30841 | 0.73472 | |
| RegenerationR6 | 0.212 | 2.902 | 0.76133 | 0.95734 | |
| RegenerationBL | -5.012 | 2.902 | 0.02234 | 0.16329 | |
| RegenerationTP | -0.013 | 2.902 | 0.99241 | 1.00000 |
Genes with expression patterns similar to MligTC455_19226
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_19226 | 225 | 4.7 | Mlig455_044480 | Neo: - Age: - |
SMARCC2 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_044480 {REF} {Length: 4043} {Pfam: SWIRM domain [PF04433.19, score=71.7]; SWIRM-associated region 1 [PF16495.7, score=49.2]; Myb-like DNA-binding domain [PF00249.33, score=40.4]; Myb-like DNA-binding domain [PF13921.8, score=19.6]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=193, Expect=3e-50]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=192, Expect=5e-50]; ENSMUSG00000032481, Smarcc1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, [Score=183, Expect=4e-47]} {Dmel: FBgn0002783, mor, moira, [Score=176, Expect=5e-45]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=224, Expect=6e-62]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=193, Expect=1e-50]} {RNA1509_21623} {RNA1310_9539.1} {RNA815_24164} |
| 2. | MligTC455_47336 | 188 | 3.92 | Mlig455_012695 | Neo: Irradiation Age: - |
PPIL4 | 2.455 | 0.795 | - | 0.958 | 0.702 | - | - | Mlig455_012695 {REF} {Length: 7286} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=127.3]; DEAD/DEAH box helicase [PF00270.31, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=65.7]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.4]} {Human: ENSG00000131013, PPIL4, peptidylprolyl isomerase like 4, [RH, Score=432, Expect=3e-140]} {Mouse: ENSMUSG00000015757, Ppil4, peptidylprolyl isomerase (cyclophilin)-like 4, [RH, Score=431, Expect=3e-140]} {Dmel: FBgn0027617, CG5808, [Score=431, Expect=7e-138]} {Celegans: WBGene00000890, sig-7, Peptidyl-prolyl cis-trans isomerase sig-7, [RH, Score=429, Expect=1e-140]} {Smed: dd_Smed_v6_5960_0_1, dd_Smed_v6_5960_0_1, [RH, Score=473, Expect=8e-157]} {RNA1509_23861} {RNA1310_14777, RNA1509_23861} {RNA1509_23861, RNA815_14242} |
| 3. | MligTC455_23156 | 88 | 1.83 | Mlig455_048448 | Neo: - Age: - |
2.45 | - | - | - | 0.732 | 0.756 | 0.962 | Mlig455_048448 {REF} {Length: 3286} {TRANSSPLICED} {Pfam: KH domain [PF00013.31, score=26.5]; Eukaryotic translation initiation factor 2 alpha subunit [PF07541.14, score=24.8]} {RNA1509_17687} {RNA1310_16014.1} {RNA815_8001} | |
| 4. | MligTC455_44880 | 77 | 1.6 | Mlig455_032301 | Neo: - |
0.968 | - | - | 0.968 | - | - | - | Mlig455_032301 {REF} {Length: 2668} {Smed: dd_Smed_v6_21823_0_1, dd_Smed_v6_21823_0_1, [RH, Score=255, Expect=2e-79]} {RNA1509_26820, RNA1509_35104} {RNA1310_9189.1, RNA1509_35104} {RNA1509_35104, RNA815_2770} | |
| 5. | MligTC455_48261 | 109 | 2.27 | Mlig455_037581 | Neo: - Age: - |
0.961 | - | - | - | - | - | 0.961 | Mlig455_037581 {REF} {Length: 2435} {TRANSSPLICED} {RNA1509_49883} {RNA1310_18334.2} {RNA815_7372} | |
| 6. | MligTC455_25566 | 133 | 2.77 | Mlig455_013513 | Neo: - Age: logFC(26M/2M)=-0.283 |
ANKAR | 0.958 | - | - | - | - | 0.958 | - | Mlig455_013513 {REF} {Length: 4806} {TRANSSPLICED} {Pfam: Armadillo/beta-catenin-like repeat [PF00514.25, score=53.6]; Ankyrin repeats (many copies) [PF13857.8, score=25.9]; Ankyrin repeats (3 copies) [PF12796.9, score=22.4]; Ankyrin repeats (many copies) [PF13637.8, score=19.3]} {Human: ENSG00000151687, ANKAR, ankyrin and armadillo repeat containing, [Score=265, Expect=1e-73]} {Mouse: ENSMUSG00000039342, Ankar, ankyrin and armadillo repeat containing, [Score=292, Expect=3e-83]} {Smed: dd_Smed_v6_10062_0_1, dd_Smed_v6_10062_0_1, [RH, Score=450, Expect=1e-144]} {RNA1509_10980} {RNA1310_5551, RNA1509_10980} {RNA1509_10980, RNA815_1615} |
| 7. | MligTC455_36502 | 111 | 2.3 | Mlig455_029861 | Neo: - Age: - |
0.954 | - | - | - | - | - | 0.954 | Mlig455_029861 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_6797} {RNA1310_123744} {RNA815_56046} | |
| 8. | MligTC455_31777 | 109 | 2.27 | Mlig455_043193 | Neo: - Age: logFC(26M/2M)=-0.597 |
TRIM3 | 0.951 | - | - | - | - | 0.951 | - | Mlig455_043193 {REF} {Length: 1930} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=38.6]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=67.0, Expect=5e-11]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=63.9, Expect=5e-10]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=67.0, Expect=3e-11]} {Celegans: WBGene00003026, lin-41, [Score=50.4, Expect=3e-06]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1} |
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