M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36536

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36536 886 18.45 Mlig455_032739

Neo: -

Age: Down-Up-Down

 SYS1 Mlig455_032739 {REF} {Length: 1671} {TRANSSPLICED} {Pfam: Integral membrane protein S linking to the trans Golgi network [PF09801.11, score=154.9]} {Human: ENSG00000204070, SYS1, SYS1, golgi trafficking protein, [RH, Score=142, Expect=9e-44]} {Mouse: ENSMUSG00000045503, Sys1, SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae), [RH, Score=143, Expect=3e-44]} {Dmel: FBgn0037603, CG11753, [RH, Score=121, Expect=2e-35]} {Celegans: WBGene00020193, T03F1.12, [RH, Score=100, Expect=8e-28]} {RNA1509_23153} {RNA1310_26666, RNA1509_23153} {RNA1509_23153, RNA815_15598}

Cumulative graph for MligTC455_36536

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.626 4.419 0.14183 0.75140
RegionR2 -0.622 4.419 0.18375 0.53565
RegionR3 0.089 4.419 0.81347 1.00000
RegionR4 1.17 4.419 0.00898 0.05624
RegionR5 0.696 4.419 0.05300 0.19564
RegionR6 0.53 4.419 0.16037 0.71290
RegionR7 0.093 4.419 0.84033 1.00000
RegionR8 -0.33 4.419 0.55829 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.08 4.419 0.45062 1.00000
RegenerationR2 0.515 4.419 0.21318 0.66036
RegenerationR3 -0.254 4.419 0.56404 0.89139
RegenerationR4 -0.561 4.419 0.20745 0.65462
RegenerationR5 -0.229 4.419 0.57720 0.89913
RegenerationR6 -0.715 4.419 0.11478 0.41727
RegenerationBL -0.746 4.419 0.15224 0.46636
RegenerationTP 0.792 4.419 0.10738 0.50617


Genes with expression patterns similar to MligTC455_36536

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36536 886 18.45 Mlig455_032739

Neo: -

Age: Down-Up-Down

 SYS1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032739 {REF} {Length: 1671} {TRANSSPLICED} {Pfam: Integral membrane protein S linking to the trans Golgi network [PF09801.11, score=154.9]} {Human: ENSG00000204070, SYS1, SYS1, golgi trafficking protein, [RH, Score=142, Expect=9e-44]} {Mouse: ENSMUSG00000045503, Sys1, SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae), [RH, Score=143, Expect=3e-44]} {Dmel: FBgn0037603, CG11753, [RH, Score=121, Expect=2e-35]} {Celegans: WBGene00020193, T03F1.12, [RH, Score=100, Expect=8e-28]} {RNA1509_23153} {RNA1310_26666, RNA1509_23153} {RNA1509_23153, RNA815_15598}
2. MligTC455_15569 487 10.15 Mlig455_067138, Mlig455_068636

Neo: -

Age: -

Region-enriched R2: 2.466/0.01939

 0.988 - - - - 0.988 -

Mlig455_067138 {REF} {Length: 332} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_27678} {RNA1310_35433} {RNA815_11024.1}

Mlig455_068636 {REF} {Length: 720} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_27678} {RNA1310_34530, RNA1509_27678} {RNA1509_27678, RNA815_11024.1}
3. MligTC455_24261 90 1.87 Mlig455_022408

Neo: -

Age: logFC(26M/2M)=-0.488

 0.988 - - - - 0.988 - Mlig455_022408 {REF} {Length: 2883} {Pfam: Dpy-30 motif [PF05186.15, score=36.5]} {RNA1509_44741} {RNA1310_10316, RNA1509_44741} {RNA1509_44741, RNA815_22683}
4. MligTC455_18900 156 3.26 Mlig455_039299, Mlig455_054447

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.913/0.00230

 0.98 - - - - 0.980 -

Mlig455_039299 {REF} {Length: 1712} {RNA1310_23535} {RNA815_25250}

Mlig455_054447 {REF} {Length: 1707} {Smed: dd_Smed_v6_13268_0_1, dd_Smed_v6_13268_0_1, [RH, Score=43.9, Expect=1e-06]} {RNA1310_23535} {RNA815_25250}
5. MligTC455_28756 33722 702.55 Mlig455_041173

Neo: -

Age: Up-Down-Up

Region-enriched R8: 1.344/0.02990

 0.972 - - - - 0.972 - Mlig455_041173 {REF} {Length: 15531} {Pfam: Integrase core domain [PF00665.28, score=41.2]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=63.9, Expect=5e-13]} {RNA1509_28643} {RNA1310_576.1} {RNA815_1671.1}
6. MligTC455_28755 31590 658.11 Mlig455_000327

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.469

Region-enriched R8: 1.346/0.02236

Regeneration-downregulated BL: -1.871

Regeneration-depleted BL: -1.871

 TRIM27 0.97 - - - - 0.970 - Mlig455_000327 {REF} {Length: 864} {Pfam: zinc finger of C3HC4-type, RING [PF15227.8, score=32.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=29.9]; RING-type zinc-finger [PF13445.8, score=27.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=26.5]; Ring finger domain [PF13639.8, score=22.7]; zinc-RING finger domain [PF14634.8, score=22.2]} {Human: ENSG00000215641, TRIM27, tripartite motif containing 27, [RH, Score=50.8, Expect=2e-07]; ENSG00000237071, TRIM27, tripartite motif containing 27, [RH, Score=50.8, Expect=2e-07]; ENSG00000204713, TRIM27, tripartite motif containing 27, [RH, Score=50.8, Expect=2e-07]; ENSG00000229006, TRIM27, tripartite motif containing 27, [RH, Score=50.8, Expect=2e-07]; ENSG00000234495, TRIM27, tripartite motif containing 27, [RH, Score=50.8, Expect=2e-07]; ENSG00000237462, TRIM27, tripartite motif containing 27, [RH, Score=50.4, Expect=1e-07]; ENSG00000233948, TRIM27, tripartite motif containing 27, [RH, Score=50.4, Expect=1e-07]} {Mouse: ENSMUSG00000021326, Trim27, tripartite motif-containing 27, [RH, Score=51.2, Expect=7e-08]} {RNA1509_13494} {RNA1310_30598} {RNA815_18679}
7. MligTC455_28757 33753 703.18 Mlig455_047399

Neo: -

Age: logFC(26M/2M)=2.751

Region-enriched R8: 1.310/0.02689

Regeneration-downregulated BL: -1.858

Regeneration-depleted BL: -1.858

 0.97 - - - - 0.970 - Mlig455_047399 {REF} {Length: 383} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1068} {RNA1310_55229} {RNA815_18679}
8. MligTC455_32363 604 12.59 Mlig455_037021

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_037021 {REF} {Length: 5141} {RNA1509_48728, RNA1509_55155} {RNA1310_27345, RNA1509_55155} {RNA1509_55155, RNA815_6529.1}
9. MligTC455_15849 863 17.97 Mlig455_057363, Mlig455_057368, Mlig455_059567

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_057363 {REF} {Length: 1048} {Pfam: Dynein light chain type 1 [PF01221.20, score=61.1]; EF hand [PF00036.34, score=35.1]; EF-hand domain pair [PF13499.8, score=35.1]; EF-hand domain [PF13405.8, score=28.8]; EF hand [PF13202.8, score=19.7]} {Mouse: ENSMUSG00000009013, Dynll1, dynein light chain LC8-type 1, [Score=43.5, Expect=1e-05]} {Celegans: WBGene00010888, dlc-2, Probable dynein light chain 2, cytoplasmic, [Score=43.1, Expect=9e-06]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [RH, Score=140, Expect=1e-41]} {RNA1509_56468} {RNA1310_32267} {RNA815_15008}

Mlig455_057368 {REF} {Length: 1049} {Pfam: Dynein light chain type 1 [PF01221.20, score=61.1]; EF hand [PF00036.34, score=35.1]; EF-hand domain pair [PF13499.8, score=35.1]; EF-hand domain [PF13405.8, score=28.8]; EF hand [PF13202.8, score=19.7]} {Mouse: ENSMUSG00000009013, Dynll1, dynein light chain LC8-type 1, [Score=43.5, Expect=1e-05]} {Celegans: WBGene00010888, dlc-2, Probable dynein light chain 2, cytoplasmic, [Score=43.1, Expect=9e-06]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [RH, Score=140, Expect=1e-41]} {RNA1509_56468} {RNA1310_32267, RNA1509_56468} {RNA1509_56468, RNA815_15008}

Mlig455_059567 {REF} {Length: 2018} {Pfam: Dynein light chain type 1 [PF01221.20, score=61.1]; EF hand [PF00036.34, score=35.1]; EF-hand domain pair [PF13499.8, score=35.1]; EF-hand domain [PF13405.8, score=28.8]; EF hand [PF13202.8, score=19.7]} {Mouse: ENSMUSG00000009013, Dynll1, dynein light chain LC8-type 1, [Score=43.5, Expect=1e-05]} {Celegans: WBGene00010888, dlc-2, Probable dynein light chain 2, cytoplasmic, [Score=43.1, Expect=9e-06]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [RH, Score=140, Expect=1e-41]} {RNA1509_56468} {RNA1310_32267} {RNA815_15008}
10. MligTC455_40766 99 2.05 Mlig455_012729

Neo: -

Age: Down-Down-Up

 TP53I11 0.963 - - - - 0.963 - Mlig455_012729 {REF} {Length: 2823} {Pfam: Tumour protein p53-inducible protein 11 [PF14936.8, score=89.2]} {Human: ENSG00000175274, TP53I11, tumor protein p53 inducible protein 11, [Score=65.5, Expect=4e-13]} {Mouse: ENSMUSG00000068735, Trp53i11, transformation related protein 53 inducible protein 11, [Score=66.6, Expect=2e-13]} {Celegans: WBGene00021185, Y9C12A.1, [Score=67.0, Expect=2e-13]} {RNA1310_38478} {RNA815_33223}
11. MligTC455_28759 22924 477.58 Mlig455_015450

Neo: -

Age: Up-Down-Up

Region-enriched R8: 1.325/0.01787

Regeneration-downregulated BL: -2.091

Regeneration-depleted BL: -2.091

 0.962 - - - - 0.962 - Mlig455_015450 {REF} {Length: 337} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18729} {RNA1310_68532} {RNA815_18679}
12. MligTC455_34980 192 4 Mlig455_030455

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.463

Region-enriched R7: 4.905/0.00001

 0.961 - - - - 0.961 - Mlig455_030455 {REF} {Length: 1764} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=94.4]} {Dmel: FBgn0030443, CG12715, [RH, Score=102, Expect=2e-23]} {Celegans: WBGene00012941, Y47D3B.4, [Score=81.3, Expect=2e-16]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=88.6, Expect=6e-19]} {RNA1509_46243} {RNA1310_16593} {RNA815_4190.1}
13. MligTC455_28758 32113 669.02 Mlig455_053395

Neo: -

Age: -

Region-enriched R8: 1.331/0.02340

Regeneration-downregulated BL: -1.855

Regeneration-depleted BL: -1.855

 UBE2O 0.96 - - - - 0.960 - Mlig455_053395 {REF} {Length: 14273} {TRANSSPLICED} {Human: ENSG00000175931, UBE2O, ubiquitin conjugating enzyme E2 O, [Score=91.7, Expect=4e-18]} {Mouse: ENSMUSG00000020802, Ube2o, ubiquitin-conjugating enzyme E2O, [Score=92.8, Expect=1e-18]} {Dmel: FBgn0027512, CG10254, [Score=72.4, Expect=2e-12]} {Smed: dd_Smed_v6_9319_0_1, dd_Smed_v6_9319_0_1, [Score=105, Expect=7e-23]} {RNA1509_28643, RNA1509_5756} {RNA1310_576.1, RNA1509_5756} {RNA1509_5756, RNA815_1671.1}
14. MligTC455_29016 36522 760.88 Mlig455_005202

Neo: -

Age: -

Regeneration-enriched R1: 3.026
Regeneration-enriched TP: 2.300
Regeneration-enriched BL: 2.050

 0.96 - - - - 0.960 - Mlig455_005202 {REF} {Length: 920} {TRANSSPLICED} {RNA1509_22244} {RNA1310_14527} {RNA815_7836.1}
15. MligTC455_49406 486 10.13 Mlig455_028873

Neo: -

Age: Down-Up-Down

 0.96 - - - 0.960 - - Mlig455_028873 {REF} {Length: 1427} {RNA1509_21869} {RNA1310_58915} {RNA815_30443}
16. MligTC455_32362 640 13.34 Mlig455_009286

Neo: -

Age: -

Regeneration-upregulated TP: 2.500

Regeneration-enriched TP: 2.500

 0.958 - - - - 0.958 - Mlig455_009286 {REF} {Length: 1450} {RNA1509_48728} {RNA1310_27345} {RNA815_10107.1}
17. MligTC455_29653 200 4.17 Mlig455_009145

Neo: -

Age: logFC(26M/2M)=0.607

 SETMAR 0.955 - - - - 0.955 - Mlig455_009145 {REF} {Length: 2358} {TRANSSPLICED} {Pfam: DDE superfamily endonuclease [PF13358.8, score=32.4]; Winged helix-turn helix [PF13551.8, score=31.6]; Homeodomain-like domain [PF13384.8, score=29.0]; Bacterial regulatory proteins, lacI family [PF00356.23, score=28.5]; Helix-turn-helix domain of resolvase [PF02796.17, score=24.3]; Helix-turn-helix domain [PF13518.8, score=23.4]; Bacterial regulatory proteins, tetR family [PF00440.25, score=23.1]; Helix-turn-helix [PF01381.24, score=21.9]; Winged helix-turn-helix DNA-binding [PF13412.8, score=21.4]; MarR family [PF12802.9, score=21.3]; Sugar-specific transcriptional regulator TrmB [PF01978.21, score=21.0]; HTH DNA binding domain [PF04967.14, score=21.0]; AsnC-type helix-turn-helix domain [PF13404.8, score=20.3]; Transposase [PF01498.20, score=19.3]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=62.4, Expect=3e-10]} {Smed: dd_Smed_v6_16239_0_2, dd_Smed_v6_16239_0_2, [Score=69.3, Expect=4e-14]} {RNA1509_272} {RNA1310_26410} {RNA815_12134}
18. MligTC455_30871 827 17.22 Mlig455_006406

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_006406 {REF} {Length: 650} {TRANSSPLICED} {RNA1509_13351, RNA1509_27053, RNA1509_29554} {RNA1310_56244, RNA1509_13351, RNA1509_27053, RNA1509_29554} {RNA1509_13351, RNA1509_27053, RNA1509_29554, RNA815_28747.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA