M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36806

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36806 209 4.35 Mlig455_031276

Neo: -

Age: -

 FLII Mlig455_031276 {REF} {Length: 4895} {TRANSSPLICED} {Pfam: Gelsolin repeat [PF00626.24, score=152.4]; Leucine rich repeat [PF13855.8, score=140.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=87.0]; Leucine Rich Repeat [PF00560.35, score=27.8]; Leucine-rich repeat [PF14580.8, score=18.3]} {Human: ENSG00000284571, FLII, FLII, actin remodeling protein, [RH, Score=911, Expect=0.0]; ENSG00000177731, FLII, FLII, actin remodeling protein, [RH, Score=911, Expect=0.0]} {Mouse: ENSMUSG00000002812, Flii, flightless I actin binding protein, [RH, Score=902, Expect=0.0]} {Dmel: FBgn0000709, fliI, flightless I, [RH, Score=904, Expect=0.0]} {Celegans: WBGene00001443, fli-1, Protein flightless-1 homolog, [RH, Score=809, Expect=0.0]} {Smed: dd_Smed_v6_1781_0_1, dd_Smed_v6_1781_0_1, [RH, Score=893, Expect=0.0]} {RNA1509_3534} {RNA1310_2222.1, RNA1509_3534} {RNA1509_3534, RNA815_3661}

Cumulative graph for MligTC455_36806

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.632 2.745 0.51290 1.00000
RegionR2 0.153 2.745 0.82026 1.00000
RegionR3 -0.721 2.745 0.97544 1.00000
RegionR4 1.882 2.745 0.17266 0.43736
RegionR5 0.624 2.745 0.57677 0.93537
RegionR6 0.779 2.745 0.50714 1.00000
RegionR7 -0.274 2.745 0.92821 1.00000
RegionR8 1.189 2.745 0.40770 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.502 2.745 0.99994 1.00000
RegenerationR2 0.553 2.745 0.57559 0.90476
RegenerationR3 1.67 2.745 0.16657 0.60107
RegenerationR4 0.689 2.745 0.54813 0.89177
RegenerationR5 0.985 2.745 0.35598 0.76823
RegenerationR6 -0.103 2.745 0.92361 1.00000
RegenerationBL 0.485 2.745 0.67598 1.00000
RegenerationTP 1.549 2.745 0.20842 0.65024


Genes with expression patterns similar to MligTC455_36806

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36806 209 4.35 Mlig455_031276

Neo: -

Age: -

 FLII 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_031276 {REF} {Length: 4895} {TRANSSPLICED} {Pfam: Gelsolin repeat [PF00626.24, score=152.4]; Leucine rich repeat [PF13855.8, score=140.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=87.0]; Leucine Rich Repeat [PF00560.35, score=27.8]; Leucine-rich repeat [PF14580.8, score=18.3]} {Human: ENSG00000284571, FLII, FLII, actin remodeling protein, [RH, Score=911, Expect=0.0]; ENSG00000177731, FLII, FLII, actin remodeling protein, [RH, Score=911, Expect=0.0]} {Mouse: ENSMUSG00000002812, Flii, flightless I actin binding protein, [RH, Score=902, Expect=0.0]} {Dmel: FBgn0000709, fliI, flightless I, [RH, Score=904, Expect=0.0]} {Celegans: WBGene00001443, fli-1, Protein flightless-1 homolog, [RH, Score=809, Expect=0.0]} {Smed: dd_Smed_v6_1781_0_1, dd_Smed_v6_1781_0_1, [RH, Score=893, Expect=0.0]} {RNA1509_3534} {RNA1310_2222.1, RNA1509_3534} {RNA1509_3534, RNA815_3661}
2. MligTC455_24618 593 12.35 Mlig455_016451, Mlig455_049822

Neo: Int S/G2/M

Age: -

 COPS3 1.873 - - - 0.959 - 0.914

Mlig455_016451 {REF} {Length: 1933} {TRANSSPLICED} {Pfam: PCI domain [PF01399.29, score=40.0]} {Human: ENSG00000141030, COPS3, COP9 signalosome subunit 3, [RH, Score=316, Expect=1e-104]} {Mouse: ENSMUSG00000019373, Cops3, COP9 signalosome subunit 3, [RH, Score=313, Expect=8e-104]} {Dmel: FBgn0027055, CSN3, COP9 signalosome subunit 3, [RH, Score=248, Expect=4e-78]} {Smed: dd_Smed_v6_7669_0_1, dd_Smed_v6_7669_0_1, [RH, Score=145, Expect=5e-40]} {RNA1509_12763} {RNA1310_23591} {RNA815_11505}

Mlig455_049822 {REF} {Length: 1930} {TRANSSPLICED} {Pfam: PCI domain [PF01399.29, score=39.7]} {Human: ENSG00000141030, COPS3, COP9 signalosome subunit 3, [RH, Score=320, Expect=3e-105]} {Mouse: ENSMUSG00000019373, Cops3, COP9 signalosome subunit 3, [RH, Score=317, Expect=2e-104]} {Dmel: FBgn0027055, CSN3, COP9 signalosome subunit 3, [RH, Score=250, Expect=3e-78]} {Smed: dd_Smed_v6_7669_0_2, dd_Smed_v6_7669_0_2, [RH, Score=152, Expect=8e-42]} {RNA1509_12763, RNA1509_25552} {RNA1310_23591, RNA1509_12763, RNA1509_25552} {RNA1509_12763, RNA1509_25552, RNA815_11505}
3. MligTC455_48118 768 15.99 Mlig455_004272, Mlig455_004343, Mlig455_004355

Neo: -

Age: -

 RNF146 1.841 - - 0.871 - - 0.970

Mlig455_004272 {REF} {Length: 1784} {TRANSSPLICED} {Pfam: WWE domain [PF02825.22, score=53.0]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=25.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=22.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.9]} {Human: ENSG00000118518, RNF146, ring finger protein 146, [RH, Score=149, Expect=3e-42]} {Mouse: ENSMUSG00000038876, Rnf146, ring finger protein 146, [RH, Score=149, Expect=3e-42]} {Dmel: FBgn0036897, CG8786, [RH, Score=151, Expect=2e-42]} {Celegans: WBGene00008330, C55A6.1, [RH, Score=115, Expect=5e-31]} {Smed: dd_Smed_v6_5084_0_1, dd_Smed_v6_5084_0_1, [RH, Score=127, Expect=1e-36]} {RNA1509_19424} {RNA1310_29204} {RNA815_48170}

Mlig455_004343 {REF} {Length: 1767} {TRANSSPLICED} {Pfam: WWE domain [PF02825.22, score=53.4]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=25.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.9]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.9]} {Human: ENSG00000118518, RNF146, ring finger protein 146, [RH, Score=149, Expect=3e-42]} {Mouse: ENSMUSG00000038876, Rnf146, ring finger protein 146, [RH, Score=149, Expect=3e-42]} {Dmel: FBgn0036897, CG8786, [RH, Score=153, Expect=3e-43]} {Celegans: WBGene00008330, C55A6.1, [RH, Score=114, Expect=2e-30]} {Smed: dd_Smed_v6_5084_0_1, dd_Smed_v6_5084_0_1, [RH, Score=127, Expect=1e-36]} {RNA1509_19424, RNA1509_40915} {RNA1310_29204, RNA1509_19424, RNA1509_40915} {RNA1509_19424, RNA1509_40915, RNA815_43590}

Mlig455_004355 {REF} {Length: 1404} {Pfam: WWE domain [PF02825.22, score=23.2]} {Dmel: FBgn0036897, CG8786, [Score=54.7, Expect=3e-08]} {RNA1509_19424} {RNA1310_29204} {RNA815_43590}
4. MligTC455_05017 159 3.32 Mlig455_040276

Neo: -

Age: -

 ATP11B 1.777 - - 0.812 - - 0.965 Mlig455_040276 {REF} {Length: 6058} {TRANSSPLICED} {Pfam: Phospholipid-translocating P-type ATPase C-terminal [PF16212.7, score=187.8]; Phospholipid-translocating ATPase N-terminal [PF16209.7, score=72.2]; haloacid dehalogenase-like hydrolase [PF00702.28, score=48.2]; E1-E2 ATPase [PF00122.22, score=43.2]; Cation transport ATPase (P-type) [PF13246.8, score=43.0]} {Human: ENSG00000058063, ATP11B, ATPase phospholipid transporting 11B (putative), [RH, Score=853, Expect=0.0]} {Mouse: ENSMUSG00000037400, Atp11b, ATPase, class VI, type 11B, [RH, Score=842, Expect=0.0]; ENSMUSG00000031441, Atp11a, ATPase, class VI, type 11A, [RH, Score=802, Expect=0.0]} {Dmel: FBgn0259221, CG42321, [Score=608, Expect=0.0]} {Celegans: WBGene00019166, tat-2, Phospholipid-transporting ATPase, [Score=566, Expect=0.0]} {Smed: dd_Smed_v6_10670_0_1, dd_Smed_v6_10670_0_1, [RH, Score=927, Expect=0.0]} {RNA1509_6335} {RNA1310_2362.1} {RNA815_3422}
5. MligTC455_40082 677 14.11 Mlig455_023737

Neo: -

Age: -

 MOB4 0.969 - - - - - 0.969 Mlig455_023737 {REF} {Length: 1885} {TRANSSPLICED} {Pfam: Mob1/phocein family [PF03637.19, score=122.1]} {Human: ENSG00000115540, MOB4, MOB family member 4, phocein, [RH, Score=353, Expect=3e-124]; ENSG00000270757, HSPE1-MOB4, HSPE1-MOB4 readthrough, [RH, Score=342, Expect=3e-119]} {Mouse: ENSMUSG00000025979, Mob4, MOB family member 4, phocein, [RH, Score=353, Expect=2e-124]} {Dmel: FBgn0259483, Mob4, MOB kinase activator 4, [RH, Score=342, Expect=4e-120]} {Celegans: WBGene00016238, mob-4, [RH, Score=317, Expect=2e-110]} {Smed: dd_Smed_v6_3664_0_1, dd_Smed_v6_3664_0_1, [RH, Score=344, Expect=3e-121]} {RNA1509_23260, RNA1509_36581, RNA1509_41478, RNA1509_54072, RNA1509_58627} {RNA1310_30974, RNA1509_23260, RNA1509_36581, RNA1509_41478, RNA1509_54072, RNA1509_58627} {RNA1509_23260, RNA1509_36581, RNA1509_41478, RNA1509_54072, RNA1509_58627, RNA815_15693}
6. MligTC455_39075 1642 34.2 Mlig455_042619, Mlig455_042654

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.221/0.00002

 KIF2A 0.967 - - - - - 0.967

Mlig455_042619 {REF} {Length: 5005} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=306.0]; Microtubule binding [PF16796.7, score=49.7]} {Human: ENSG00000068796, KIF2A, kinesin family member 2A, [RH, Score=712, Expect=0.0]} {Mouse: ENSMUSG00000021693, Kif2a, kinesin family member 2A, [RH, Score=657, Expect=0.0]} {Dmel: FBgn0030268, Klp10A, Kinesin-like protein at 10A, [RH, Score=581, Expect=0.0]} {Celegans: WBGene00002219, klp-7, Kinesin-like protein, [RH, Score=488, Expect=5e-162]} {Smed: dd_Smed_v6_3087_0_1, dd_Smed_v6_3087_0_1, [RH, Score=806, Expect=0.0]} {RNA1509_20918} {RNA1310_7277} {RNA815_5104}

Mlig455_042654 {REF} {Length: 5415} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=305.2]; Microtubule binding [PF16796.7, score=49.8]} {Human: ENSG00000068796, KIF2A, kinesin family member 2A, [RH, Score=715, Expect=0.0]} {Mouse: ENSMUSG00000021693, Kif2a, kinesin family member 2A, [RH, Score=689, Expect=0.0]} {Dmel: FBgn0030268, Klp10A, Kinesin-like protein at 10A, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002219, klp-7, Kinesin-like protein, [RH, Score=527, Expect=4e-178]} {Smed: dd_Smed_v6_3087_0_1, dd_Smed_v6_3087_0_1, [RH, Score=810, Expect=0.0]} {RNA1509_14705, RNA1509_20918, RNA1509_24352, RNA1509_26579, RNA1509_52010} {RNA1310_7277, RNA1509_14705, RNA1509_20918, RNA1509_24352, RNA1509_26579, RNA1509_52010} {RNA1509_14705, RNA1509_20918, RNA1509_24352, RNA1509_26579, RNA1509_52010, RNA815_5104}
7. MligTC455_31055 209 4.36 Mlig455_014425, Mlig455_066932, Mlig455_068881

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.506

Regeneration-enriched TP: 7.184
Regeneration-enriched BL: 5.494
Regeneration-enriched R5: 4.435

 FCN1 0.966 - - - 0.966 - -

Mlig455_014425 {REF} {Length: 2284} {RNA1509_32402} {RNA1310_758.2} {RNA815_14013}

Mlig455_066932 {REF} {Length: 1520} {RNA1509_32402} {RNA1310_758.2} {RNA815_14013}

Mlig455_068881 {REF} {Length: 5752} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=170.1]} {Human: ENSG00000085265, FCN1, ficolin 1, [RH, Score=141, Expect=2e-39]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [RH, Score=133, Expect=2e-36]} {Dmel: FBgn0033312, CG8642, [Score=112, Expect=5e-28]} {Celegans: WBGene00020516, T15B7.1, [Score=65.5, Expect=6e-12]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=103, Expect=1e-24]} {RNA1509_14335} {RNA1310_758.2} {RNA815_14013}
8. MligTC455_30729 485 10.1 Mlig455_003248

Neo: -

Age: -

 METAP1 0.953 - - - - - 0.953 Mlig455_003248 {REF} {Length: 2261} {TRANSSPLICED} {Pfam: Metallopeptidase family M24 [PF00557.26, score=168.8]; zf-MYND-like zinc finger, mRNA-binding [PF15801.7, score=69.4]} {Human: ENSG00000164024, METAP1, methionyl aminopeptidase 1, [RH, Score=471, Expect=4e-166]} {Mouse: ENSMUSG00000005813, Metap1, methionyl aminopeptidase 1, [RH, Score=466, Expect=2e-164]} {Dmel: FBgn0039219, CG13630, [RH, Score=489, Expect=4e-174]} {Celegans: WBGene00003129, map-1, Methionine AminoPeptidase, [RH, Score=455, Expect=9e-161]} {Smed: dd_Smed_v6_3555_0_1, dd_Smed_v6_3555_0_1, [RH, Score=511, Expect=0.0]} {RNA1509_6441} {RNA1310_22393.1} {RNA815_7042}
9. MligTC455_43054 311 6.48 Mlig455_066450

Neo: -

Age: logFC(26M/2M)=0.826

 PGP 0.953 - - - - - 0.953 Mlig455_066450 {REF} {Length: 2583} {Pfam: Tetraspanin family [PF00335.22, score=119.3]; Haloacid dehalogenase-like hydrolase [PF13344.8, score=94.9]; HAD-hyrolase-like [PF13242.8, score=64.3]; haloacid dehalogenase-like hydrolase [PF00702.28, score=23.7]; Haloacid dehalogenase-like hydrolase [PF13419.8, score=21.5]} {Human: ENSG00000184207, PGP, phosphoglycolate phosphatase, [RH, Score=148, Expect=1e-39]} {Mouse: ENSMUSG00000043445, Pgp, phosphoglycolate phosphatase, [RH, Score=152, Expect=4e-41]} {Dmel: FBgn0036760, CG5567, [RH, Score=132, Expect=3e-34]} {Celegans: WBGene00016892, C53A3.2, [RH, Score=161, Expect=1e-44]} {Smed: dd_Smed_v6_11063_0_1, dd_Smed_v6_11063_0_1, [RH, Score=179, Expect=3e-52]} {RNA1509_23273} {RNA1310_30232} {RNA815_13107.1}
10. MligTC455_24044 321 6.69 Mlig455_042095

Neo: -

Age: logFC(26M/2M)=0.284

 RAB11A 0.951 - - - - - 0.951 Mlig455_042095 {REF} {Length: 2333} {Pfam: Ras family [PF00071.24, score=185.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=112.7]; ADP-ribosylation factor family [PF00025.23, score=44.9]; 50S ribosome-binding GTPase [PF01926.25, score=27.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.9]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=20.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=18.9]} {Human: ENSG00000103769, RAB11A, RAB11A, member RAS oncogene family, [Score=213, Expect=2e-69]; ENSG00000185236, RAB11B, RAB11B, member RAS oncogene family, [Score=206, Expect=7e-67]} {Mouse: ENSMUSG00000004771, Rab11a, RAB11A, member RAS oncogene family, [Score=213, Expect=1e-69]; ENSMUSG00000077450, Rab11b, RAB11B, member RAS oncogene family, [Score=206, Expect=4e-67]} {Dmel: FBgn0015790, Rab11, [Score=213, Expect=5e-70]} {Celegans: WBGene00004274, rab-11.1, Ras-related protein rab-11.1, [Score=209, Expect=2e-68]} {Smed: dd_Smed_v6_867_0_1, dd_Smed_v6_867_0_1, [Score=200, Expect=7e-65]} {RNA1509_31963, RNA1509_52120} {RNA1310_28163, RNA1509_31963, RNA1509_52120} {RNA1509_31963, RNA1509_52120, RNA815_20566}
11. MligTC455_12651 877 18.27 Mlig455_061117

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.727

 0.95 - - - 0.950 - - Mlig455_061117 {REF} {Length: 921} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.23, score=30.1]} {RNA1509_16147} {RNA1310_40437} {RNA815_22118}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA