M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37235

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37235 123 2.55 Mlig455_023469, Mlig455_068152

Neo: -

Age: -

Mlig455_023469 {REF} {Length: 2439} {TRANSSPLICED} {RNA1509_36044} {RNA1310_22986} {RNA815_10707}

Mlig455_068152 {REF} {Length: 2831} {TRANSSPLICED} {RNA1509_36044, RNA1509_43481} {RNA1310_22986, RNA1509_36044, RNA1509_43481} {RNA1509_36044, RNA1509_43481, RNA815_10707}

Cumulative graph for MligTC455_37235

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.47 2.139 0.99972 1.00000
RegionR2 -0.791 2.139 0.91477 1.00000
RegionR3 -0.9 2.139 0.92522 1.00000
RegionR4 2.286 2.139 0.24349 0.54138
RegionR5 1.972 2.139 0.22489 0.52870
RegionR6 2.765 2.139 0.09219 0.55854
RegionR7 1.698 2.139 0.32364 0.95869
RegionR8 -4.56 2.139 0.99982 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.083 2.139 1.00000 1.00000
RegenerationR2 1.482 2.139 0.37413 0.79786
RegenerationR3 1.748 2.139 0.39681 0.80088
RegenerationR4 0.271 2.139 0.89249 1.00000
RegenerationR5 0.617 2.139 0.74437 0.97014
RegenerationR6 -0.744 2.139 0.67306 0.91017
RegenerationBL 3.103 2.139 0.10187 0.37619
RegenerationTP 2.766 2.139 0.29833 0.74388


Genes with expression patterns similar to MligTC455_37235

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37235 123 2.55 Mlig455_023469, Mlig455_068152

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000

Mlig455_023469 {REF} {Length: 2439} {TRANSSPLICED} {RNA1509_36044} {RNA1310_22986} {RNA815_10707}

Mlig455_068152 {REF} {Length: 2831} {TRANSSPLICED} {RNA1509_36044, RNA1509_43481} {RNA1310_22986, RNA1509_36044, RNA1509_43481} {RNA1509_36044, RNA1509_43481, RNA815_10707}
2. MligTC455_44886 664 13.83 Mlig455_009418

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R5: 1.267/0.00151

 1.76 0.803 - - - - 0.957 Mlig455_009418 {REF} {Length: 2273} {TRANSSPLICED} {RNA1509_19251} {RNA1310_6205.2, RNA1509_19251} {RNA1509_19251, RNA815_3904}
3. MligTC455_50857 444 9.25 Mlig455_019848

Neo: Neoblast

Age: -

Region-enriched R5: 1.859/0.00000

 0.973 - - - - - 0.973 Mlig455_019848 {REF} {Length: 663} {TRANSSPLICED} {RNA1509_31574} {RNA1310_54335.2, RNA1509_31574} {RNA1509_31574, RNA815_27703.1}
4. MligTC455_15941 1123 23.4 Mlig455_049917

Neo: Neoblast, stringent

Age: Down-Up-Up

Region-enriched R5: 2.129/0.00000

 0.972 - - - - - 0.972 Mlig455_049917 {REF} {Length: 702} {TRANSSPLICED} {Pfam: Replication factor A protein 3 [PF08661.13, score=81.0]} {RNA1509_16541, RNA1509_18258} {RNA1310_40327, RNA1509_16541, RNA1509_18258} {RNA1509_16541, RNA1509_18258, RNA815_26601}
5. MligTC455_23354 985 20.51 Mlig455_043725, Mlig455_043812

Neo: -

Age: -

 GEMIN5 0.972 - - - - - 0.972

Mlig455_043725 {REF} {Length: 4629} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=53.7]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=34.1]} {Human: ENSG00000082516, GEMIN5, gem nuclear organelle associated protein 5, [RH, Score=263, Expect=6e-71]} {Mouse: ENSMUSG00000037275, Gemin5, gem nuclear organelle associated protein 5, [Score=271, Expect=9e-74]} {Dmel: FBgn0033526, Caf1-105, Chromatin assembly factor 1, p105 subunit, [Score=62.0, Expect=4e-09]} {Celegans: WBGene00021074, W07E6.2, [Score=58.5, Expect=6e-10]} {Smed: dd_Smed_v6_3438_0_1, dd_Smed_v6_3438_0_1, [Score=56.6, Expect=6e-08]} {RNA1509_10687} {RNA1310_1434.2} {RNA815_13032}

Mlig455_043812 {REF} {Length: 4661} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=56.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=34.0]} {Human: ENSG00000082516, GEMIN5, gem nuclear organelle associated protein 5, [RH, Score=281, Expect=1e-76]} {Mouse: ENSMUSG00000037275, Gemin5, gem nuclear organelle associated protein 5, [Score=289, Expect=3e-79]} {Dmel: FBgn0033526, Caf1-105, Chromatin assembly factor 1, p105 subunit, [Score=60.8, Expect=7e-09]} {Celegans: WBGene00021074, W07E6.2, [Score=58.2, Expect=9e-10]} {Smed: dd_Smed_v6_3438_0_1, dd_Smed_v6_3438_0_1, [Score=58.5, Expect=2e-08]} {RNA1509_10687, RNA1509_30279} {RNA1310_1434.2, RNA1509_30279} {RNA1509_30279, RNA815_13032}
6. MligTC455_39166 204 4.25 Mlig455_053622

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_053622 {REF} {Length: 236} {NoTransDecoderORF} {RNA1509_49771} {RNA1310_129153} {RNA815_30495}
7. MligTC455_50263 574 11.97 Mlig455_055664

Neo: -

Age: Down-Down-Up

 TARBP2 0.962 - - - - - 0.962 Mlig455_055664 {REF} {Length: 1663} {TRANSSPLICED} {Pfam: Double-stranded RNA binding motif [PF00035.28, score=62.0]; Staufen C-terminal domain [PF16482.7, score=26.1]} {Human: ENSG00000139546, TARBP2, TARBP2, RISC loading complex RNA binding subunit, [RH, Score=62.0, Expect=2e-11]} {Mouse: ENSMUSG00000023051, Tarbp2, TARBP2, RISC loading complex RNA binding subunit, [Score=81.6, Expect=1e-17]} {Dmel: FBgn0032515, loqs, loquacious, [RH, Score=121, Expect=2e-30]} {Smed: dd_Smed_v6_9213_0_1, dd_Smed_v6_9213_0_1, [RH, Score=157, Expect=1e-44]} {RNA1509_37226} {RNA1310_1441.1, RNA1509_37226} {RNA1509_37226, RNA815_48096}
8. MligTC455_38273 352 7.33 Mlig455_068576

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_068576 {REF} {Length: 2617} {TRANSSPLICED} {RNA1509_9143} {RNA1310_8524} {RNA815_2383}
9. MligTC455_13743 92 1.92 Mlig455_046621

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_046621 {REF} {Length: 1509} {RNA1310_97283}
10. MligTC455_34700 158 3.28 Mlig455_037094

Neo: -

Age: Down-Down-Up

 HGD 0.96 - - - - 0.960 - Mlig455_037094 {REF} {Length: 3523} {Pfam: homogentisate 1,2-dioxygenase [PF04209.15, score=195.6]} {Human: ENSG00000113924, HGD, homogentisate 1,2-dioxygenase, [Score=178, Expect=4e-54]} {Mouse: ENSMUSG00000022821, Hgd, homogentisate 1, 2-dioxygenase, [Score=181, Expect=4e-55]} {Dmel: FBgn0040211, hgo, homogentisate 1,2-dioxygenase, [Score=180, Expect=5e-55]} {Celegans: WBGene00001843, hgo-1, Homogentisate 1,2-dioxygenase, [Score=186, Expect=2e-57]} {Smed: dd_Smed_v6_2908_0_1, dd_Smed_v6_2908_0_1, [Score=157, Expect=3e-46]} {RNA1509_15283} {RNA1310_18945} {RNA815_2326}
11. MligTC455_49489 839 17.47 Mlig455_038448, Mlig455_038589

Neo: Int S/G2/M

Age: Down-Up-Down

 0.96 - - - - - 0.960

Mlig455_038448 {REF} {Length: 901} {TRANSSPLICED} {Pfam: Mediator complex subunit 30 [PF11315.10, score=49.9]; Syntaxin-like protein [PF14523.8, score=19.3]} {RNA1509_53595} {RNA1310_31320.1} {RNA815_17323.2}

Mlig455_038589 {REF} {Length: 1047} {TRANSSPLICED} {Pfam: Mediator complex subunit 30 [PF11315.10, score=52.1]; Syntaxin-like protein [PF14523.8, score=19.3]} {RNA1509_14117, RNA1509_34617, RNA1509_53595} {RNA1310_31320.2, RNA1509_14117, RNA1509_34617, RNA1509_53595} {RNA1509_14117, RNA1509_34617, RNA1509_53595, RNA815_17323.1}
12. MligTC455_44237 511 10.65 Mlig455_000120

Neo: -

Age: logFC(26M/2M)=-0.570

 DDX58 0.958 - - - - - 0.958 Mlig455_000120 {REF} {Length: 3493} {TRANSSPLICED} {Pfam: Type III restriction enzyme, res subunit [PF04851.17, score=62.5]; Helicase conserved C-terminal domain [PF00271.33, score=56.3]; C-terminal domain of RIG-I [PF11648.10, score=51.9]; DEAD/DEAH box helicase [PF00270.31, score=51.2]; RIG-I receptor C-terminal domain [PF18119.3, score=29.0]; SWI2/SNF2 ATPase [PF18766.3, score=24.4]; Terminase large subunit, T4likevirus-type, N-terminal [PF03237.17, score=20.1]} {Human: ENSG00000107201, DDX58, DExD/H-box helicase 58, [RH, Score=306, Expect=1e-88]} {Mouse: ENSMUSG00000040296, Ddx58, DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, [RH, Score=288, Expect=2e-82]} {Dmel: FBgn0038889, Fancm, Fanconi anemia group M helicase, [Score=91.3, Expect=3e-18]} {Celegans: WBGene00001090, drh-1, Dicer Related Helicase; Dicer-related helicase, [Score=190, Expect=5e-50]} {Smed: dd_Smed_v6_3742_0_1, dd_Smed_v6_3742_0_1, [RH, Score=378, Expect=8e-113]} {RNA1509_32387} {RNA1310_3559.1} {RNA815_2443}
13. MligTC455_31252 894 18.62 Mlig455_016030, Mlig455_054951, Mlig455_054965

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R5: 1.348/0.03896

 0.957 - - - - - 0.957

Mlig455_016030 {REF} {Length: 7387} {TRANSSPLICED} {Pfam: Rough deal protein C-terminal region [PF10493.11, score=42.1]} {RNA1509_4327} {RNA1310_538} {RNA815_243.1}

Mlig455_054951 {REF} {Length: 7408} {TRANSSPLICED} {Pfam: Rough deal protein C-terminal region [PF10493.11, score=42.1]} {RNA1509_4327} {RNA1310_538, RNA1509_4327} {RNA1509_4327, RNA815_243.1}

Mlig455_054965 {REF} {Length: 8214} {TRANSSPLICED} {Pfam: Rough deal protein C-terminal region [PF10493.11, score=41.8]} {RNA1509_4327} {RNA1310_538} {RNA815_243.1}
14. MligTC455_37566 487 10.15 Mlig455_012335

Neo: -

Age: -

Region-enriched R4: 2.321/0.00580
Region-enriched R5: 2.072/0.00095

 MPV17L2 0.955 - - - - - 0.955 Mlig455_012335 {REF} {Length: 970} {Pfam: Mpv17 / PMP22 family [PF04117.14, score=64.5]} {Human: ENSG00000254858, MPV17L2, MPV17 mitochondrial inner membrane protein like 2, [Score=97.8, Expect=8e-25]} {Mouse: ENSMUSG00000035559, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [Score=93.6, Expect=2e-23]; ENSMUSG00000111476, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [Score=93.6, Expect=2e-23]} {Dmel: FBgn0030481, CG1662, [Score=112, Expect=2e-30]} {Celegans: WBGene00022744, ZK470.1, [Score=73.9, Expect=2e-16]} {Smed: dd_Smed_v6_13953_0_1, dd_Smed_v6_13953_0_1, [Score=54.3, Expect=3e-09]} {RNA1509_35977, RNA1509_58154} {RNA1310_39934, RNA1509_35977, RNA1509_58154} {RNA1509_35977, RNA1509_58154, RNA815_18530.1}
15. MligTC455_44796 322 6.71 Mlig455_016168

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.366/0.01937

 UBASH3A 0.955 - - - - - 0.955 Mlig455_016168 {REF} {Length: 2883} {Human: ENSG00000160185, UBASH3A, ubiquitin associated and SH3 domain containing A, [Score=97.1, Expect=3e-20]; ENSG00000154127, UBASH3B, ubiquitin associated and SH3 domain containing B, [Score=95.5, Expect=1e-19]} {Mouse: ENSMUSG00000032020, Ubash3b, ubiquitin associated and SH3 domain containing, B, [Score=97.8, Expect=7e-21]; ENSMUSG00000042345, Ubash3a, ubiquitin associated and SH3 domain containing, A, [Score=95.1, Expect=1e-19]} {Dmel: FBgn0039137, CG13604, [Score=108, Expect=3e-24]} {Celegans: WBGene00009962, F53B6.7, [Score=68.6, Expect=3e-12]} {Smed: dd_Smed_v6_12024_0_1, dd_Smed_v6_12024_0_1, [Score=118, Expect=2e-27]} {RNA1509_26013} {RNA1310_1022.2} {RNA815_2099}
16. MligTC455_47491 302 6.29 Mlig455_030531

Neo: Irradiation

Age: Up-Down-Up, logFC(26M/2M)=0.489

Region-specific R5: 2.664

Region-enriched R5: 1.755/0.00006

 TUT7 0.953 - - - - - 0.953 Mlig455_030531 {REF} {Length: 3483} {TRANSSPLICED} {Pfam: TUTase nucleotidyltransferase domain [PF19088.2, score=36.1]} {Human: ENSG00000083223, TUT7, terminal uridylyl transferase 7, [Score=53.1, Expect=2e-06]} {RNA1509_22764} {RNA1310_6443.1} {RNA815_24098}
17. MligTC455_36725 2025 42.18 Mlig455_067648

Neo: Neoblast

Age: -

Region-enriched R4: 1.585/0.00020
Region-enriched R5: 1.492/0.00001

 0.952 - - - - - 0.952 Mlig455_067648 {REF} {Length: 504} {NoTransDecoderORF} {RNA1509_13962, RNA1509_42268} {RNA1310_27652, RNA1509_42268} {RNA1509_42268, RNA815_13775}
18. MligTC455_37487 357 7.44 Mlig455_048723

Neo: Neoblast

Age: -

Region-enriched R5: 2.818/0.00001

 AC116366.3 0.952 - - - - - 0.952 Mlig455_048723 {REF} {Length: 1717} {Pfam: Putative exonuclease SbcCD, C subunit [PF13558.8, score=31.1]; RecF/RecN/SMC N terminal domain [PF02463.21, score=27.9]} {Human: ENSG00000283782, AC116366.3, novel protein, [RH, Score=276, Expect=1e-82]; ENSG00000113522, RAD50, RAD50 double strand break repair protein, [RH, Score=276, Expect=5e-82]} {Mouse: ENSMUSG00000020380, Rad50, RAD50 double strand break repair protein, [Score=278, Expect=7e-83]} {Dmel: FBgn0034728, rad50, [RH, Score=231, Expect=1e-66]} {Celegans: WBGene00004296, rad-50, DNA repair protein rad-50, [RH, Score=158, Expect=7e-42]} {Smed: dd_Smed_v6_11475_0_1, dd_Smed_v6_11475_0_1, [Score=249, Expect=3e-73]} {RNA1509_46929} {RNA1310_1701} {RNA815_40610}
19. MligTC455_20667 992 20.67 Mlig455_031254, Mlig455_031299, Mlig455_031329

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.264

Region-enriched R5: 1.345/0.00244

 XPC 0.951 - - - - - 0.951

Mlig455_031254 {REF} {Length: 234} {NoTransDecoderORF} {RNA1509_41875} {RNA1310_5347}

Mlig455_031299 {REF} {Length: 5228} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=85.1]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=54.1]; Rad4 transglutaminase-like domain [PF03835.17, score=50.1]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=292, Expect=5e-84]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=302, Expect=6e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=3e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=231, Expect=1e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=236, Expect=3e-67]} {RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1310_2636, RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1509_22240, RNA1509_37174, RNA1509_43141, RNA815_7190.1}

Mlig455_031329 {REF} {Length: 3756} {TRANSSPLICED} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=84.0]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=52.6]; Rad4 transglutaminase-like domain [PF03835.17, score=50.2]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=283, Expect=5e-81]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=301, Expect=9e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=2e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=229, Expect=3e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=237, Expect=2e-67]} {RNA1509_38140} {RNA1310_4273.2} {RNA815_7190.1}
20. MligTC455_36144 1899 39.57 Mlig455_029382

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.364

Region-enriched R5: 1.838/0.00000
Region-enriched R4: 1.288/0.00565

 KPNA2 0.951 - - - - - 0.951 Mlig455_029382 {REF} {Length: 2476} {TRANSSPLICED} {Pfam: Armadillo/beta-catenin-like repeat [PF00514.25, score=191.5]; Importin beta binding domain [PF01749.22, score=66.2]; HEAT-like repeat [PF13513.8, score=63.2]; Atypical Arm repeat [PF16186.7, score=62.2]; HEAT repeats [PF13646.8, score=51.2]; HEAT repeat [PF02985.24, score=34.0]} {Human: ENSG00000182481, KPNA2, karyopherin subunit alpha 2, [Score=458, Expect=4e-156]} {Mouse: ENSMUSG00000018362, Kpna2, karyopherin (importin) alpha 2, [Score=451, Expect=2e-153]; ENSMUSG00000066878, Gm10184, predicted pseudogene 10184, [Score=451, Expect=2e-153]; ENSMUSG00000027782, Kpna4, karyopherin (importin) alpha 4, [Score=431, Expect=1e-145]} {Dmel: FBgn0267727, Pen, Pendulin, [RH, Score=397, Expect=2e-132]} {Celegans: WBGene00002074, ima-3, Importin subunit alpha-3, [Score=376, Expect=1e-124]} {Smed: dd_Smed_v6_590_0_1, dd_Smed_v6_590_0_1, [Score=419, Expect=2e-141]} {RNA1509_1276} {RNA1310_8995.1} {RNA815_2897}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA