M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37686

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37686 51 1.06 Mlig455_027755

Neo: -

Age: logFC(26M/2M)=-0.218

 DNALI1 Mlig455_027755 {REF} {Length: 2419} {Pfam: Axonemal dynein light chain [PF10211.11, score=302.7]; Calcium-activated SK potassium channel [PF03530.16, score=91.8]} {Human: ENSG00000163879, DNALI1, dynein axonemal light intermediate chain 1, [RH, Score=392, Expect=1e-131]} {Mouse: ENSMUSG00000042707, Dnali1, dynein, axonemal, light intermediate polypeptide 1, [RH, Score=385, Expect=3e-129]} {Dmel: FBgn0037962, CG6971, [RH, Score=281, Expect=2e-89]} {Celegans: WBGene00018307, dyla-1, DYnein Light chain, Axonemal p28 type, [RH, Score=173, Expect=6e-49]} {Smed: dd_Smed_v6_4453_0_1, dd_Smed_v6_4453_0_1, [RH, Score=410, Expect=1e-139]} {RNA1509_2358} {RNA1310_27099} {RNA815_9783}

Cumulative graph for MligTC455_37686

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.972 1.242 0.24718 0.89401
RegionR2 -0.82 1.242 0.79659 1.00000
RegionR3 -2.093 1.242 1.00000 1.00000
RegionR4 1.829 1.242 0.26718 0.57175
RegionR5 1.048 1.242 0.30472 0.64131
RegionR6 1.224 1.242 0.23882 0.82284
RegionR7 -2.369 1.242 1.00000 1.00000
RegionR8 -1.791 1.242 0.99979 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.712 1.242 0.50110 1.00000
RegenerationR2 1.41 1.242 0.20740 0.65493
RegenerationR3 3.24 1.242 0.05209 0.39448
RegenerationR4 1.016 1.242 0.45187 0.84314
RegenerationR5 1.097 1.242 0.38659 0.78966
RegenerationR6 -0.507 1.242 0.65838 0.90241
RegenerationBL 2.752 1.242 0.18667 0.51823
RegenerationTP 3.405 1.242 0.22184 0.66533


Genes with expression patterns similar to MligTC455_37686

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37686 51 1.06 Mlig455_027755

Neo: -

Age: logFC(26M/2M)=-0.218

 DNALI1 3 - - - 1.000 1.000 1.000 Mlig455_027755 {REF} {Length: 2419} {Pfam: Axonemal dynein light chain [PF10211.11, score=302.7]; Calcium-activated SK potassium channel [PF03530.16, score=91.8]} {Human: ENSG00000163879, DNALI1, dynein axonemal light intermediate chain 1, [RH, Score=392, Expect=1e-131]} {Mouse: ENSMUSG00000042707, Dnali1, dynein, axonemal, light intermediate polypeptide 1, [RH, Score=385, Expect=3e-129]} {Dmel: FBgn0037962, CG6971, [RH, Score=281, Expect=2e-89]} {Celegans: WBGene00018307, dyla-1, DYnein Light chain, Axonemal p28 type, [RH, Score=173, Expect=6e-49]} {Smed: dd_Smed_v6_4453_0_1, dd_Smed_v6_4453_0_1, [RH, Score=410, Expect=1e-139]} {RNA1509_2358} {RNA1310_27099} {RNA815_9783}
2. MligTC455_39981 457 9.52 Mlig455_028079

Neo: Int S/G2/M

Age: -

 MRPL17 0.967 - - - - - 0.967 Mlig455_028079 {REF} {Length: 1342} {TRANSSPLICED} {Pfam: Ribosomal protein L17 [PF01196.21, score=29.7]} {Human: ENSG00000158042, MRPL17, mitochondrial ribosomal protein L17, [RH, Score=57.4, Expect=3e-10]} {Mouse: ENSMUSG00000030879, Mrpl17, mitochondrial ribosomal protein L17, [RH, Score=57.8, Expect=2e-10]} {Dmel: FBgn0035122, mRpL17, mitochondrial ribosomal protein L17, [RH, Score=67.0, Expect=4e-14]} {Smed: dd_Smed_v6_3289_0_1, dd_Smed_v6_3289_0_1, [RH, Score=105, Expect=1e-28]} {RNA1509_21955, RNA1509_25190} {RNA1310_25456, RNA1509_21955, RNA1509_25190} {RNA1509_21955, RNA1509_25190, RNA815_9956}
3. MligTC455_52851 150 3.12 Mlig455_019167

Neo: -

Age: -

 IPP 0.965 - - - - - 0.965 Mlig455_019167 {REF} {Length: 4194} {Pfam: Kelch motif [PF13964.8, score=59.7]; BTB/POZ domain [PF00651.33, score=59.3]; Kelch motif [PF01344.27, score=43.5]; PB1 domain [PF00564.26, score=38.1]; BTB And C-terminal Kelch [PF07707.17, score=31.3]; Kelch motif [PF13854.8, score=29.1]; Galactose oxidase, central domain [PF13418.8, score=21.0]} {Human: ENSG00000197429, IPP, intracisternal A particle-promoted polypeptide, [Score=108, Expect=1e-23]} {Mouse: ENSMUSG00000028696, Ipp, IAP promoted placental gene, [Score=116, Expect=2e-26]} {Dmel: FBgn0034396, CG15097, [Score=101, Expect=1e-21]} {Celegans: WBGene00002184, kel-1, KELch-repeat containing protein; Kel-1 protein, [Score=94.0, Expect=2e-19]} {Smed: dd_Smed_v6_1751_0_1, dd_Smed_v6_1751_0_1, [Score=112, Expect=2e-25]} {RNA1509_34974} {RNA1310_11834, RNA1509_34974} {RNA1509_34974, RNA815_22708}
4. MligTC455_12988 77 1.61 Mlig455_034660

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_034660 {REF} {Length: 1932} {RNA1509_3330} {RNA1310_28670} {RNA815_4944.1}
5. MligTC455_46020 110 2.29 Mlig455_055591

Neo: Int S/G2/M

Age: -

Region-enriched R2: 3.851/0.03747

 RRP8 0.954 - - - 0.954 - - Mlig455_055591 {REF} {Length: 1084} {TRANSSPLICED} {Pfam: Hypothetical methyltransferase [PF05148.17, score=214.3]; Methyltransferase domain [PF08241.14, score=19.7]} {Human: ENSG00000132275, RRP8, ribosomal RNA processing 8, [RH, Score=177, Expect=3e-51]} {Mouse: ENSMUSG00000030888, Rrp8, ribosomal RNA processing 8, methyltransferase, homolog (yeast), [RH, Score=181, Expect=4e-53]} {Dmel: FBgn0034422, CG7137, [RH, Score=152, Expect=6e-43]} {Celegans: WBGene00020296, T07A9.8, Ribosomal RNA-processing protein 8, [RH, Score=175, Expect=3e-52]} {Smed: dd_Smed_v6_11164_0_1, dd_Smed_v6_11164_0_1, [RH, Score=163, Expect=2e-48]} {RNA1509_19284, RNA1509_28448} {RNA1310_32382, RNA1509_19284, RNA1509_28448} {RNA1509_19284, RNA1509_28448, RNA815_14841}
6. MligTC455_24570 111 2.32 Mlig455_028864

Neo: -

Age: Up-Up-Down

 SCNN1A 0.953 - - - - - 0.953 Mlig455_028864 {REF} {Length: 5288} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=176.7]} {Human: ENSG00000111319, SCNN1A, sodium channel epithelial 1 alpha subunit, [Score=55.1, Expect=2e-07]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.4, Expect=5e-10]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [Score=255, Expect=3e-76]} {RNA1310_33448.1} {RNA815_16256}
7. MligTC455_49013 277 5.78 Mlig455_006233

Neo: -

Age: Down-Up-Down

 UBL3 0.953 - - - - - 0.953 Mlig455_006233 {REF} {Length: 2378} {TRANSSPLICED} {Pfam: Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=87.5]; Ubiquitin family [PF00240.25, score=19.0]} {Human: ENSG00000122042, UBL3, ubiquitin like 3, [RH, Score=150, Expect=2e-47]} {Mouse: ENSMUSG00000001687, Ubl3, ubiquitin-like 3, [RH, Score=149, Expect=3e-47]} {Dmel: FBgn0026076, UBL3, Ubiquitin like 3, [RH, Score=145, Expect=1e-42]} {Celegans: WBGene00008121, C46F11.6, Ubiquitin-like protein, [Score=114, Expect=2e-33]} {Smed: dd_Smed_v6_10574_0_1, dd_Smed_v6_10574_0_1, [Score=107, Expect=7e-31]} {RNA1509_29746} {RNA1310_56429} {RNA815_28925}
8. MligTC455_36867 593 12.35 Mlig455_003271, Mlig455_014183, Mlig455_035891, Mlig455_035892, Mlig455_046980

Neo: Germline

Age: -

 0.952 - - - 0.952 - -

Mlig455_003271 {REF} {Length: 2634} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=34.6]} {RNA1509_9680} {RNA1310_22937, RNA1509_9680} {RNA1509_9680, RNA815_12122}

Mlig455_014183 {REF} {Length: 2608} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=34.6]} {RNA1509_9680} {RNA1310_22937} {RNA815_12122}

Mlig455_035891 {REF} {Length: 950} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=34.6]} {RNA1509_9680} {RNA1310_22937} {RNA815_12122}

Mlig455_035892 {REF} {Length: 332} {NoTransDecoderORF} {RNA1509_9680} {RNA1310_68465}

Mlig455_046980 {REF} {Length: 6307} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=34.6]} {RNA1509_9680} {RNA1310_22937} {RNA815_12122}
9. MligTC455_40585 87 1.82 Mlig455_052406, Mlig455_069786

Neo: Int S/G2/M

Age: -

 0.951 - - - - - 0.951

Mlig455_052406 {REF} {Length: 1060} {TRANSSPLICED} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=37.7]} {RNA1509_45340} {RNA1310_16790, RNA1509_45340} {RNA1509_45340, RNA815_20038}

Mlig455_069786 {REF} {Length: 1478} {TRANSSPLICED} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=57.9]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=77.8, Expect=8e-15]} {Celegans: WBGene00013762, Y113G7B.12, [Score=77.0, Expect=8e-15]} {RNA1509_45340} {RNA1310_16790} {RNA815_20038}
10. MligTC455_50416 236 4.91 Mlig455_020155

Neo: -

Age: logFC(26M/2M)=-0.515

 ANK1 0.95 - - - - - 0.950 Mlig455_020155 {REF} {Length: 7072} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=370.4]; Ankyrin repeat [PF00023.32, score=241.0]; Ankyrin repeat [PF13606.8, score=233.7]; Ankyrin repeats (many copies) [PF13637.8, score=228.4]; Ankyrin repeats (many copies) [PF13857.8, score=209.7]; Mab-21 protein [PF03281.16, score=35.8]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=333, Expect=3e-92]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=322, Expect=4e-89]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=290, Expect=2e-78]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=288, Expect=5e-78]} {Smed: dd_Smed_v6_2072_0_29, dd_Smed_v6_2072_0_29, [Score=283, Expect=4e-80]} {RNA1509_34872} {RNA1310_938, RNA1509_34872} {RNA1509_34872, RNA815_1787.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA