Data search
Results for MligTC455_37899
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_37899 | 164 | 3.42 | Mlig455_041330 | Neo: - |
Mlig455_041330 {REF} {Length: 2067} {RNA1509_6108} {RNA1310_13444.1} {RNA815_4706.1} |
Cumulative graph for MligTC455_37899
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -4.5 | 2.148 | 0.36437 | 1.00000 | |
| RegionR2 | 0.162 | 2.148 | 0.79615 | 1.00000 | |
| RegionR3 | 0.156 | 2.148 | 0.78842 | 1.00000 | |
| RegionR4 | 0.819 | 2.148 | 0.46971 | 0.79774 | |
| RegionR5 | -0.331 | 2.148 | 0.93311 | 1.00000 | |
| RegionR6 | -0.117 | 2.148 | 0.88766 | 1.00000 | |
| RegionR7 | 1.188 | 2.148 | 0.24361 | 0.86985 | |
| RegionR8 | 2.623 | 2.148 | 0.00362 | 0.10538 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 4.493 | 2.148 | 0.43281 | 1.00000 | |
| RegenerationR2 | -0.486 | 2.148 | 0.39108 | 0.80874 | |
| RegenerationR3 | -1.06 | 2.148 | 0.14814 | 0.57608 | |
| RegenerationR4 | -0.971 | 2.148 | 0.23632 | 0.68559 | |
| RegenerationR5 | -0.704 | 2.148 | 0.33687 | 0.75542 | |
| RegenerationR6 | -0.273 | 2.148 | 0.72465 | 0.93817 | |
| RegenerationBL | -1.101 | 2.148 | 0.20373 | 0.54397 | |
| RegenerationTP | -1.998 | 2.148 | 0.01867 | 0.23422 |
Genes with expression patterns similar to MligTC455_37899
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_37899 | 164 | 3.42 | Mlig455_041330 | Neo: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_041330 {REF} {Length: 2067} {RNA1509_6108} {RNA1310_13444.1} {RNA815_4706.1} | |
| 2. | MligTC455_30427 | 370 | 7.7 | Mlig455_014862, Mlig455_014902, Mlig455_014903, Mlig455_024518, Mlig455_052526 | Neo: - Age: Up-Down-Up |
1.809 | - | - | - | 0.974 | - | 0.835 | Mlig455_014862 {REF} {Length: 4961} {Pfam: Pentapeptide repeats (9 copies) [PF13599.8, score=39.6]} {RNA1509_13222} {RNA1310_59923} {RNA815_11419.1} Mlig455_014902 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968} Mlig455_014903 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968} Mlig455_024518 {REF} {Length: 4185} {NoTransDecoderORF} {RNA1509_3398} {RNA1310_24716.1} {RNA815_11419.1} Mlig455_052526 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613} |
|
| 3. | MligTC455_36326 | 84 | 1.76 | Mlig455_016006 | Neo: - |
1.698 | - | - | - | 0.731 | - | 0.967 | Mlig455_016006 {REF} {Length: 4974} {TRANSSPLICED} {tRNA: Val(TAC),pseudo, score=22.2} {Pfam: FG-GAP-like repeat [PF13517.8, score=33.0]; PQQ enzyme repeat [PF01011.23, score=24.5]; PQQ-like domain [PF13360.8, score=21.8]; FG-GAP repeat [PF01839.25, score=19.4]} {Dmel: FBgn0038725, CG6184, [RH, Score=274, Expect=1e-77]} {Smed: dd_Smed_v6_12614_0_1, dd_Smed_v6_12614_0_1, [RH, Score=491, Expect=9e-160]} {RNA1509_26989} {RNA1310_6207.1} {RNA815_1279} | |
| 4. | MligTC455_26994 | 250 | 5.2 | Mlig455_032952 | Neo: - Age: - |
GTPBP2 | 1.682 | 0.969 | - | 0.713 | - | - | - | Mlig455_032952 {REF} {Length: 4484} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=75.7]; hAT family C-terminal dimerisation region [PF05699.16, score=47.0]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=20.1]} {Human: ENSG00000172432, GTPBP2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Mouse: ENSMUSG00000023952, Gtpbp2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Dmel: FBgn0037391, CG2017, [Score=358, Expect=8e-111]} {Celegans: WBGene00011449, T04H1.2, [RH, Score=350, Expect=4e-108]} {Smed: dd_Smed_v6_10435_0_1, dd_Smed_v6_10435_0_1, [RH, Score=329, Expect=2e-98]} {RNA1509_39291} {RNA1310_9075} {RNA815_7492} |
| 5. | MligTC455_44214 | 826 | 17.2 | Mlig455_051977 | Neo: - Age: logFC(26M/2M)=-0.586 |
TRPM3 | 1.661 | - | 0.708 | - | 0.953 | - | - | Mlig455_051977 {REF} {Length: 7693} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=181.9]; Ankyrin repeats (many copies) [PF13637.8, score=159.2]; Ankyrin repeat [PF13606.8, score=83.5]; Ankyrin repeats (many copies) [PF13857.8, score=69.7]; Ankyrin repeat [PF00023.32, score=40.0]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=19.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=88.6, Expect=1e-16]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=88.6, Expect=7e-17]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=84.3, Expect=1e-15]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=77.8, Expect=1e-13]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=89.7, Expect=2e-17]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=115, Expect=1e-25]} {RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1310_537, RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1509_3976, RNA1509_45452, RNA1509_49658, RNA815_57.1} |
| 6. | MligTC455_15494 | 299 | 6.23 | Mlig455_003802 | Neo: - Age: - |
1.656 | - | - | 0.705 | 0.951 | - | - | Mlig455_003802 {REF} {Length: 2576} {RNA1509_23541} {RNA1310_23341.1} {RNA815_11967.1} | |
| 7. | MligTC455_49565 | 210 | 4.37 | Mlig455_000357 | Neo: - Age: Down-Up-Up |
0.978 | 0.978 | - | - | - | - | - | Mlig455_000357 {REF} {Length: 1051} {RNA1509_22287} {RNA1310_42170} {RNA815_20808} | |
| 8. | MligTC455_38853 | 175 | 3.65 | Mlig455_023629, Mlig455_057448 | Neo: - Age: Up-Down-Down |
0.967 | - | - | - | 0.967 | - | - | Mlig455_023629 {REF} {Length: 364} {NoTransDecoderORF} {RNA1509_49659} {RNA1310_123644} Mlig455_057448 {REF} {Length: 4350} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_11419.1} |
|
| 9. | MligTC455_52006 | 422 | 8.79 | Mlig455_001435 | Neo: - |
0.961 | - | - | - | 0.961 | - | - | Mlig455_001435 {REF} {Length: 2591} {RNA1509_21480, RNA1509_26941, RNA1509_44473} {RNA1310_9042, RNA1509_21480, RNA1509_26941, RNA1509_44473} {RNA1509_21480, RNA1509_26941, RNA1509_44473, RNA815_15746} | |
| 10. | MligTC455_03268 | 213 | 4.43 | Mlig455_070869 | Neo: - Age: - |
KCTD16 | 0.955 | - | - | - | - | - | 0.955 | Mlig455_070869 {REF} {Length: 1233} {Pfam: BTB/POZ domain [PF02214.24, score=57.6]} {Human: ENSG00000183775, KCTD16, potassium channel tetramerization domain containing 16, [RH, Score=174, Expect=1e-51]; ENSG00000178695, KCTD12, potassium channel tetramerization domain containing 12, [RH, Score=166, Expect=2e-49]} {Mouse: ENSMUSG00000051401, Kctd16, potassium channel tetramerisation domain containing 16, [RH, Score=176, Expect=2e-52]} {Dmel: FBgn0038839, Ktl, Kctd12-like, [RH, Score=251, Expect=3e-84]} {Celegans: WBGene00014848, VM106R.1, [RH, Score=178, Expect=6e-55]} {Smed: dd_Smed_v6_12440_0_1, dd_Smed_v6_12440_0_1, [RH, Score=242, Expect=5e-81]} {RNA1310_34396} {RNA815_14650} |
| 11. | MligTC455_22379 | 327 | 6.81 | Mlig455_022109 | Neo: - |
0.952 | 0.952 | - | - | - | - | - | Mlig455_022109 {REF} {Length: 3627} {Smed: dd_Smed_v6_26649_0_1, dd_Smed_v6_26649_0_1, [RH, Score=67.8, Expect=5e-12]} {RNA1509_16150} {RNA1310_12576.1, RNA1509_16150} {RNA1509_16150, RNA815_4283} | |
| 12. | MligTC455_28136 | 87 | 1.82 | Mlig455_001489 | Neo: - Age: - |
0.951 | - | - | - | 0.951 | - | - | Mlig455_001489 {REF} {Length: 2208} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1} |
Berezikov Lab - 2020-2021 © ERIBA