M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_26994

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_26994 250 5.20 Mlig455_032952

Neo: -

Age: -

 GTPBP2 Mlig455_032952 {REF} {Length: 4484} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=75.7]; hAT family C-terminal dimerisation region [PF05699.16, score=47.0]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=20.1]} {Human: ENSG00000172432, GTPBP2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Mouse: ENSMUSG00000023952, Gtpbp2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Dmel: FBgn0037391, CG2017, [Score=358, Expect=8e-111]} {Celegans: WBGene00011449, T04H1.2, [RH, Score=350, Expect=4e-108]} {Smed: dd_Smed_v6_10435_0_1, dd_Smed_v6_10435_0_1, [RH, Score=329, Expect=2e-98]} {RNA1509_39291} {RNA1310_9075} {RNA815_7492}

Cumulative graph for MligTC455_26994

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.588 2.716 0.18937 0.82239
RegionR2 0.344 2.716 0.69835 1.00000
RegionR3 0.398 2.716 0.64871 1.00000
RegionR4 1.077 2.716 0.24949 0.54874
RegionR5 0.209 2.716 0.76083 1.00000
RegionR6 0.779 2.716 0.37935 0.95927
RegionR7 1.05 2.716 0.28205 0.91510
RegionR8 1.731 2.716 0.06369 0.49012

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.962 2.716 0.20919 0.94839
RegenerationR2 0.545 2.716 0.26375 0.71028
RegenerationR3 0.475 2.716 0.41809 0.81366
RegenerationR4 0.209 2.716 0.72911 0.96431
RegenerationR5 0.273 2.716 0.62880 0.92205
RegenerationR6 -0.333 2.716 0.59717 0.86724
RegenerationBL 0.244 2.716 0.71124 1.00000
RegenerationTP -0.771 2.716 0.30358 0.74896


Genes with expression patterns similar to MligTC455_26994

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_26994 250 5.2 Mlig455_032952

Neo: -

Age: -

 GTPBP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032952 {REF} {Length: 4484} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=75.7]; hAT family C-terminal dimerisation region [PF05699.16, score=47.0]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=20.1]} {Human: ENSG00000172432, GTPBP2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Mouse: ENSMUSG00000023952, Gtpbp2, GTP binding protein 2, [Score=408, Expect=3e-129]} {Dmel: FBgn0037391, CG2017, [Score=358, Expect=8e-111]} {Celegans: WBGene00011449, T04H1.2, [RH, Score=350, Expect=4e-108]} {Smed: dd_Smed_v6_10435_0_1, dd_Smed_v6_10435_0_1, [RH, Score=329, Expect=2e-98]} {RNA1509_39291} {RNA1310_9075} {RNA815_7492}
2. MligTC455_23581 225 4.69 Mlig455_015808

Neo: -

Age: -

 NAA60 1.776 - - - - 0.958 0.818 Mlig455_015808 {REF} {Length: 6520} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=46.0]; Acetyltransferase (GNAT) domain [PF13508.9, score=26.8]; FR47-like protein [PF08445.12, score=24.8]; Acetyltransferase (GNAT) domain [PF13673.9, score=23.2]} {Human: ENSG00000122390, NAA60, N(alpha)-acetyltransferase 60, NatF catalytic subunit, [RH, Score=172, Expect=3e-52]} {Mouse: ENSMUSG00000005982, Naa60, N(alpha)-acetyltransferase 60, NatF catalytic subunit, [RH, Score=171, Expect=9e-52]} {Dmel: FBgn0036039, Naa60, N(alpha)-acetyltransferase 60, [RH, Score=165, Expect=1e-49]} {Celegans: WBGene00009277, F30F8.10, [RH, Score=120, Expect=1e-32]} {Smed: dd_Smed_v6_4766_0_1, dd_Smed_v6_4766_0_1, [RH, Score=150, Expect=7e-44]} {RNA1509_25064, RNA1509_33189} {RNA1310_13963, RNA1509_25064, RNA1509_33189} {RNA1509_25064, RNA1509_33189, RNA815_11012}
3. MligTC455_37899 164 3.42 Mlig455_041330

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.919

 1.682 0.969 - 0.713 - - - Mlig455_041330 {REF} {Length: 2067} {RNA1509_6108} {RNA1310_13444.1} {RNA815_4706.1}
4. MligTC455_49565 210 4.37 Mlig455_000357

Neo: -

Age: Down-Up-Up

 0.975 0.975 - - - - - Mlig455_000357 {REF} {Length: 1051} {RNA1509_22287} {RNA1310_42170} {RNA815_20808}
5. MligTC455_21849 76 1.59 Mlig455_006051

Neo: -

Age: -

 0.967 0.967 - - - - - Mlig455_006051 {REF} {Length: 3885} {RNA1509_60168} {RNA1310_96606, RNA1509_60168} {RNA1509_60168, RNA815_23281}
6. MligTC455_34711 1445 30.11 Mlig455_051634, Mlig455_061998

Neo: -

Age: -

Region-enriched R4: 1.537/0.00193
Region-enriched R5: 1.078/0.00456

 SDHAF3 0.967 - - - - 0.967 -

Mlig455_051634 {REF} {Length: 2779} {Pfam: Complex1_LYR-like [PF13233.8, score=62.5]; Complex 1 protein (LYR family) [PF05347.17, score=38.9]} {Human: ENSG00000196636, SDHAF3, succinate dehydrogenase complex assembly factor 3, [RH, Score=83.2, Expect=8e-21]} {Mouse: ENSMUSG00000042505, Sdhaf3, succinate dehydrogenase complex assembly factor 3, [RH, Score=87.0, Expect=2e-22]} {Dmel: FBgn0038437, Sdhaf3, Succinate dehydrogenase assembly factor 3, [RH, Score=88.2, Expect=4e-23]} {Celegans: WBGene00009139, F25H9.7, [RH, Score=57.4, Expect=4e-11]} {Smed: dd_Smed_v6_8316_0_1, dd_Smed_v6_8316_0_1, [RH, Score=84.0, Expect=1e-21]} {RNA1509_39733} {RNA1310_36694} {RNA815_22183.1}

Mlig455_061998 {REF} {Length: 3730} {Pfam: Complex1_LYR-like [PF13233.8, score=62.0]; Complex 1 protein (LYR family) [PF05347.17, score=37.7]} {Human: ENSG00000196636, SDHAF3, succinate dehydrogenase complex assembly factor 3, [RH, Score=83.2, Expect=8e-21]} {Mouse: ENSMUSG00000042505, Sdhaf3, succinate dehydrogenase complex assembly factor 3, [RH, Score=86.7, Expect=3e-22]} {Dmel: FBgn0038437, Sdhaf3, Succinate dehydrogenase assembly factor 3, [RH, Score=88.2, Expect=4e-23]} {Celegans: WBGene00009139, F25H9.7, [RH, Score=57.4, Expect=3e-11]} {Smed: dd_Smed_v6_8316_0_1, dd_Smed_v6_8316_0_1, [RH, Score=84.0, Expect=1e-21]} {RNA1509_39733} {RNA1310_36694} {RNA815_22183.1}
7. MligTC455_22635 180 3.75 Mlig455_047759

Neo: -

Age: Down-Up-Down

 CCDC92 0.963 - - - - - 0.963 Mlig455_047759 {REF} {Length: 1811} {TRANSSPLICED} {Pfam: Coiled-coil domain of unknown function [PF14916.8, score=67.8]} {Human: ENSG00000275035, CCDC92, coiled-coil domain containing 92, [RH, Score=54.3, Expect=7e-08]; ENSG00000119242, CCDC92, coiled-coil domain containing 92, [RH, Score=54.3, Expect=7e-08]} {Mouse: ENSMUSG00000037979, Ccdc92, coiled-coil domain containing 92, [RH, Score=52.8, Expect=1e-07]} {Smed: dd_Smed_v6_15609_0_1, dd_Smed_v6_15609_0_1, [RH, Score=62.8, Expect=3e-11]} {RNA1509_1885} {RNA1310_45567.1} {RNA815_31004}
8. MligTC455_43113 715 14.89 Mlig455_016896, Mlig455_017002

Neo: -

Age: -

 PLK4 0.963 - - - - - 0.963

Mlig455_016896 {REF} {Length: 2722} {Pfam: Protein kinase domain [PF00069.27, score=192.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=117.3]; Polo-like Kinase 4 Polo Box 1 [PF18190.3, score=29.4]} {Human: ENSG00000142731, PLK4, polo like kinase 4, [Score=231, Expect=3e-64]} {Mouse: ENSMUSG00000025758, Plk4, polo like kinase 4, [Score=229, Expect=1e-63]; ENSMUSG00000116326, Plk4, polo like kinase 4, [Score=229, Expect=1e-63]} {Dmel: FBgn0026371, SAK, Sak kinase, [Score=223, Expect=3e-62]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=163, Expect=4e-42]} {Smed: dd_Smed_v6_12637_0_1, dd_Smed_v6_12637_0_1, [Score=263, Expect=7e-77]} {RNA1509_22440} {RNA1310_6530} {RNA815_4771.1}

Mlig455_017002 {REF} {Length: 2872} {Pfam: Protein kinase domain [PF00069.27, score=252.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=161.9]; Polo-like Kinase 4 Polo Box 2 [PF18409.3, score=56.6]; Polo-like Kinase 4 Polo Box 1 [PF18190.3, score=29.6]; Kinase-like [PF14531.8, score=25.9]; ABC1 atypical kinase-like domain [PF03109.18, score=25.8]; Fungal protein kinase [PF17667.3, score=21.5]} {Human: ENSG00000142731, PLK4, polo like kinase 4, [RH, Score=275, Expect=7e-80]} {Mouse: ENSMUSG00000025758, Plk4, polo like kinase 4, [RH, Score=272, Expect=6e-79]; ENSMUSG00000116326, Plk4, polo like kinase 4, [RH, Score=272, Expect=6e-79]} {Dmel: FBgn0026371, SAK, Sak kinase, [RH, Score=287, Expect=2e-85]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=207, Expect=1e-57]} {Smed: dd_Smed_v6_12637_0_1, dd_Smed_v6_12637_0_1, [RH, Score=335, Expect=3e-103]} {RNA1509_22440} {RNA1310_6530, RNA1509_22440} {RNA1509_22440, RNA815_10817}
9. MligTC455_45914 359 7.49 Mlig455_025337

Neo: -

Age: logFC(26M/2M)=-0.269

 TRAF3IP1 0.962 - - - - - 0.962 Mlig455_025337 {REF} {Length: 2762} {TRANSSPLICED} {Pfam: Microtubule-binding protein MIP-T3 C-terminal region [PF17749.3, score=131.6]; Microtubule-binding protein MIP-T3 CH-like domain [PF10243.11, score=42.6]; Takusan [PF04822.15, score=19.2]} {Human: ENSG00000204104, TRAF3IP1, TRAF3 interacting protein 1, [Score=198, Expect=2e-55]} {Mouse: ENSMUSG00000034292, Traf3ip1, TRAF3 interacting protein 1, [RH, Score=189, Expect=2e-52]} {Dmel: FBgn0086707, ncm, nucampholin, [Score=48.9, Expect=1e-05]} {Celegans: WBGene00001127, dyf-11, [Score=67.4, Expect=1e-11]} {Smed: dd_Smed_v6_10562_0_1, dd_Smed_v6_10562_0_1, [Score=168, Expect=1e-45]} {RNA1509_5107} {RNA1310_14186.2} {RNA815_2859}
10. MligTC455_38055 149 3.1 Mlig455_042999

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_042999 {REF} {Length: 2994} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=34.7]} {RNA1509_1341} {RNA1310_73219} {RNA815_46869}
11. MligTC455_36245 490 10.21 Mlig455_060055

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.650

 0.96 - - - - - 0.960 Mlig455_060055 {REF} {Length: 582} {NoTransDecoderORF} {RNA1509_29797, RNA1509_55333} {RNA1310_38449, RNA1509_29797, RNA1509_55333} {RNA1509_29797, RNA1509_55333, RNA815_2803.2}
12. MligTC455_46750 122 2.55 Mlig455_009720

Neo: -

Age: Up-Down-Down

 FAXC 0.952 - - 0.952 - - - Mlig455_009720 {REF} {Length: 4246} {Pfam: Glutathione S-transferase N-terminal domain [PF17172.6, score=81.9]; Glutathione S-transferase, C-terminal domain [PF17171.6, score=61.5]; Glutathione S-transferase, C-terminal domain [PF13410.8, score=23.8]; Outer mitochondrial membrane transport complex protein [PF10568.11, score=21.4]} {Human: ENSG00000146267, FAXC, failed axon connections homolog, [Score=113, Expect=6e-28]} {Mouse: ENSMUSG00000028246, Faxc, failed axon connections homolog, [Score=114, Expect=3e-28]} {Dmel: FBgn0014163, fax, failed axon connections, [RH, Score=161, Expect=5e-46]} {Celegans: WBGene00012987, Y48C3A.3, [RH, Score=178, Expect=2e-53]} {Smed: dd_Smed_v6_1736_0_1, dd_Smed_v6_1736_0_1, [Score=203, Expect=6e-64]} {RNA1509_17322} {RNA1310_2517.1} {RNA815_2965}
13. MligTC455_23429 152 3.18 Mlig455_032930, Mlig455_032945, Mlig455_041872

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.489

 SEPT1, SEPT4 0.951 0.951 - - - - -

Mlig455_032930 {REF} {Length: 2418} {Pfam: Septin [PF00735.20, score=155.7]; RsgA GTPase [PF03193.18, score=35.6]; AAA ATPase domain [PF13191.8, score=29.1]; 50S ribosome-binding GTPase [PF01926.25, score=26.5]; AAA domain [PF13401.8, score=19.4]; AIG1 family [PF04548.18, score=19.3]} {Human: ENSG00000180096, SEPT1, septin 1, [Score=146, Expect=2e-40]; ENSG00000122545, SEPT7, septin 7, [Score=144, Expect=2e-39]; ENSG00000108387, SEPT4, septin 4, [Score=142, Expect=3e-38]; ENSG00000184702, SEPT5, septin 5, [Score=142, Expect=9e-40]; ENSG00000168385, SEPT2, septin 2, [Score=141, Expect=2e-38]; ENSG00000284874, SEPT5-GP1BB, SEPT5-GP1BB readthrough, [Score=139, Expect=7e-38]} {Mouse: ENSMUSG00000000486, Sept1, septin 1, [Score=145, Expect=1e-40]; ENSMUSG00000001833, Sept7, septin 7, [Score=144, Expect=1e-39]; ENSMUSG00000026276, Sept2, septin 2, [Score=140, Expect=4e-40]; ENSMUSG00000020486, Sept4, septin 4, [Score=140, Expect=5e-38]; ENSMUSG00000116048, Sept2, septin 2, [Score=140, Expect=7e-39]; ENSMUSG00000116594, AC133488.1, novel protein, [Score=138, Expect=7e-38]; ENSMUSG00000072214, Sept5, septin 5, [Score=138, Expect=8e-38]} {Dmel: FBgn0011710, Sep1, Septin 1, [Score=140, Expect=9e-39]} {Celegans: WBGene00006793, unc-59, [Score=129, Expect=4e-34]} {Smed: dd_Smed_v6_4007_0_1, dd_Smed_v6_4007_0_1, [Score=150, Expect=3e-42]} {RNA1509_54075} {RNA1310_9163.1} {RNA815_3453}

Mlig455_032945 {REF} {Length: 2512} {Pfam: Septin [PF00735.20, score=289.2]; RsgA GTPase [PF03193.18, score=33.4]; AAA ATPase domain [PF13191.8, score=28.5]; 50S ribosome-binding GTPase [PF01926.25, score=28.4]; AIG1 family [PF04548.18, score=18.3]} {Human: ENSG00000108387, SEPT4, septin 4, [Score=256, Expect=2e-78]; ENSG00000180096, SEPT1, septin 1, [Score=255, Expect=3e-79]; ENSG00000168385, SEPT2, septin 2, [Score=251, Expect=5e-78]; ENSG00000184702, SEPT5, septin 5, [Score=248, Expect=5e-77]; ENSG00000284874, SEPT5-GP1BB, SEPT5-GP1BB readthrough, [Score=248, Expect=8e-77]} {Mouse: ENSMUSG00000020486, Sept4, septin 4, [Score=254, Expect=3e-78]; ENSMUSG00000026276, Sept2, septin 2, [Score=251, Expect=2e-78]; ENSMUSG00000116048, Sept2, septin 2, [Score=251, Expect=2e-78]; ENSMUSG00000000486, Sept1, septin 1, [Score=250, Expect=8e-78]; ENSMUSG00000072214, Sept5, septin 5, [Score=246, Expect=2e-76]} {Dmel: FBgn0011710, Sep1, Septin 1, [Score=251, Expect=2e-78]} {Celegans: WBGene00006795, unc-61, [Score=216, Expect=3e-64]} {Smed: dd_Smed_v6_1717_0_1, dd_Smed_v6_1717_0_1, [Score=243, Expect=2e-74]} {RNA1509_54075} {RNA1310_9163.1} {RNA815_3453}

Mlig455_041872 {REF} {Length: 2281} {Pfam: Septin [PF00735.20, score=289.1]; RsgA GTPase [PF03193.18, score=33.6]; AAA ATPase domain [PF13191.8, score=28.4]; 50S ribosome-binding GTPase [PF01926.25, score=28.3]; AIG1 family [PF04548.18, score=18.3]} {Human: ENSG00000108387, SEPT4, septin 4, [Score=256, Expect=2e-78]; ENSG00000180096, SEPT1, septin 1, [Score=255, Expect=3e-79]; ENSG00000168385, SEPT2, septin 2, [Score=250, Expect=6e-78]; ENSG00000284874, SEPT5-GP1BB, SEPT5-GP1BB readthrough, [Score=248, Expect=1e-76]; ENSG00000184702, SEPT5, septin 5, [Score=248, Expect=7e-77]} {Mouse: ENSMUSG00000020486, Sept4, septin 4, [Score=254, Expect=5e-78]; ENSMUSG00000116048, Sept2, septin 2, [Score=251, Expect=3e-78]; ENSMUSG00000026276, Sept2, septin 2, [Score=251, Expect=3e-78]; ENSMUSG00000000486, Sept1, septin 1, [Score=249, Expect=1e-77]; ENSMUSG00000072214, Sept5, septin 5, [Score=246, Expect=2e-76]} {Dmel: FBgn0011710, Sep1, Septin 1, [Score=249, Expect=6e-78]} {Celegans: WBGene00006795, unc-61, [Score=216, Expect=5e-64]} {Smed: dd_Smed_v6_1717_0_1, dd_Smed_v6_1717_0_1, [Score=243, Expect=2e-74]} {RNA1509_54075} {RNA1310_9163.1} {RNA815_3453}
14. MligTC455_43447 167 3.48 Mlig455_029434

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_029434 {REF} {Length: 848} {Pfam: Family of unknown function with LKAAEAR motif [PF15478.8, score=91.2]} {Smed: dd_Smed_v6_8554_0_1, dd_Smed_v6_8554_0_1, [Score=85.9, Expect=4e-22]} {RNA1310_33601} {RNA815_52641}
15. MligTC455_48348 938 19.55 Mlig455_027793, Mlig455_063494

Neo: -

Age: logFC(26M/2M)=-0.661

Region-enriched R8: 1.890/0.04247

 SCN5A 0.95 - - - - - 0.950

Mlig455_027793 {REF} {Length: 6955} {Pfam: Ion transport protein [PF00520.33, score=754.1]; Polycystin cation channel [PF08016.14, score=55.1]; ZIP Zinc transporter [PF02535.24, score=22.9]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=22.8]} {Human: ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [RH, Score=1273, Expect=0.0]} {Mouse: ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=1260, Expect=0.0]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=1253, Expect=0.0]} {Dmel: FBgn0285944, para, paralytic, [Score=914, Expect=0.0]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [Score=452, Expect=2e-130]} {Smed: dd_Smed_v6_12243_0_1, dd_Smed_v6_12243_0_1, [RH, Score=1245, Expect=0.0]} {RNA1509_2331} {RNA1310_490.1} {RNA815_185.1}

Mlig455_063494 {REF} {Length: 7000} {Pfam: Ion transport protein [PF00520.33, score=755.0]; Polycystin cation channel [PF08016.14, score=55.6]; ZIP Zinc transporter [PF02535.24, score=23.8]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=22.8]} {Human: ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [RH, Score=1273, Expect=0.0]} {Mouse: ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=1261, Expect=0.0]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=1240, Expect=0.0]} {Dmel: FBgn0285944, para, paralytic, [Score=914, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=310, Expect=8e-85]} {Smed: dd_Smed_v6_12243_0_1, dd_Smed_v6_12243_0_1, [RH, Score=1244, Expect=0.0]} {RNA1509_2331} {RNA1310_490.1, RNA1509_2331} {RNA1509_2331, RNA815_185.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA