M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37996

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37996 140 2.92 Mlig455_023092, Mlig455_038319

Neo: -

Age: -

 PRR9

Mlig455_023092 {REF} {Length: 1376} {Pfam: Cysteine rich repeat [PF02363.21, score=26.5]} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=45.1, Expect=5e-06]} {Celegans: WBGene00018026, F35A5.4, [Score=67.8, Expect=1e-13]} {RNA1310_7390.1} {RNA815_26670}

Mlig455_038319 {REF} {Length: 5692} {Smed: dd_Smed_v6_18585_0_1, dd_Smed_v6_18585_0_1, [Score=105, Expect=2e-25]} {RNA1310_17667} {RNA815_26670}

Cumulative graph for MligTC455_37996

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.796 1.128 1.00000 1.00000
RegionR2 2.906 1.128 0.05641 0.28509
RegionR3 -0.262 1.128 0.99965 1.00000
RegionR4 1.874 1.128 0.12179 0.35006
RegionR5 1.894 1.128 0.20373 0.49585
RegionR6 2.149 1.128 0.14385 0.67905
RegionR7 -1.789 1.128 0.99967 1.00000
RegionR8 -2.976 1.128 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.444 1.128 0.12454 0.85517
RegenerationR2 -0.694 1.128 0.37498 0.79851
RegenerationR3 2.13 1.128 0.14272 0.56909
RegenerationR4 0.492 1.128 0.66692 0.94121
RegenerationR5 0.584 1.128 0.56287 0.89301
RegenerationR6 0.711 1.128 0.56389 0.84809
RegenerationBL 2.378 1.128 0.25693 0.61394
RegenerationTP 3.234 1.128 0.24966 0.69680


Genes with expression patterns similar to MligTC455_37996

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37996 140 2.92 Mlig455_023092, Mlig455_038319

Neo: -

Age: -

 PRR9 3 - - 1.000 1.000 1.000 -

Mlig455_023092 {REF} {Length: 1376} {Pfam: Cysteine rich repeat [PF02363.21, score=26.5]} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=45.1, Expect=5e-06]} {Celegans: WBGene00018026, F35A5.4, [Score=67.8, Expect=1e-13]} {RNA1310_7390.1} {RNA815_26670}

Mlig455_038319 {REF} {Length: 5692} {Smed: dd_Smed_v6_18585_0_1, dd_Smed_v6_18585_0_1, [Score=105, Expect=2e-25]} {RNA1310_17667} {RNA815_26670}
2. MligTC455_10121 35 0.73 Mlig455_063072

Neo: -

Age: -

 1.704 - - 0.975 - 0.729 - Mlig455_063072 {REF} {Length: 984} {RNA1509_30913} {RNA1310_4887.1} {RNA815_17996}
3. MligTC455_17621 97 2.02 Mlig455_042086

Neo: Int S/G2/M

Age: Up-Up-Down

 0.975 - - - 0.975 - - Mlig455_042086 {REF} {Length: 2172} {NoTransDecoderORF} {RNA1509_18737} {RNA1310_4779.2, RNA1509_18737} {RNA1509_18737, RNA815_11780}
4. MligTC455_42692 297 6.2 Mlig455_027473

Neo: Irradiation

Age: Up-Down-Down

 GCFC2 0.974 - - - 0.974 - - Mlig455_027473 {REF} {Length: 3517} {TRANSSPLICED} {Pfam: GC-rich sequence DNA-binding factor-like protein [PF07842.14, score=37.9]} {Human: ENSG00000005436, GCFC2, GC-rich sequence DNA-binding factor 2, [RH, Score=178, Expect=5e-46]} {Mouse: ENSMUSG00000035125, Gcfc2, GC-rich sequence DNA binding factor 2, [RH, Score=172, Expect=3e-44]; ENSMUSG00000022974, Paxbp1, PAX3 and PAX7 binding protein 1, [RH, Score=168, Expect=1e-42]} {Dmel: FBgn0037466, CG1965, [RH, Score=154, Expect=2e-38]} {Celegans: WBGene00009672, F43G9.12, [RH, Score=125, Expect=4e-29]} {Smed: dd_Smed_v6_11179_0_1, dd_Smed_v6_11179_0_1, [RH, Score=202, Expect=1e-54]} {RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1310_5802.1, RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1509_16602, RNA1509_20486, RNA1509_28455, RNA815_7547}
5. MligTC455_14610 52 1.08 Mlig455_029372

Neo: -

Age: -

 0.967 - - 0.967 - - - Mlig455_029372 {REF} {Length: 1229} {NoTransDecoderORF} {RNA1509_40324} {RNA1310_34452} {RNA815_33614}
6. MligTC455_19370 33 0.69 Mlig455_048611

Neo: -

Age: Down-Up-Down

 0.95 - - 0.950 - - - Mlig455_048611 {REF} {Length: 725} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=26.3]; Stage II sporulation protein P (SpoIIP) [PF07454.13, score=22.1]; Cleavage and polyadenylation factor 2 C-terminal [PF13299.8, score=21.0]; Sodium/glutamate symporter [PF03616.16, score=18.0]} {RNA1509_21195} {RNA1310_7332.2} {RNA815_26275}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA