Data search
Results for MligTC455_38240
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_38240 | 333 | 6.94 | Mlig455_023639 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.360 |
XRCC5 | Mlig455_023639 {REF} {Length: 3137} {TRANSSPLICED} {Pfam: Ku70/Ku80 beta-barrel domain [PF02735.18, score=128.0]; Ku C terminal domain like [PF08785.13, score=59.2]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=35.1]} {Human: ENSG00000079246, XRCC5, X-ray repair cross complementing 5, [RH, Score=258, Expect=7e-75]} {Mouse: ENSMUSG00000026187, Xrcc5, X-ray repair complementing defective repair in Chinese hamster cells 5, [RH, Score=253, Expect=2e-73]} {Smed: dd_Smed_v6_8421_0_1, dd_Smed_v6_8421_0_1, [RH, Score=310, Expect=2e-95]} {RNA1509_41784, RNA1509_8513} {RNA1310_6057.1, RNA1509_41784, RNA1509_8513} {RNA1509_41784, RNA1509_8513, RNA815_2239} |
Cumulative graph for MligTC455_38240
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.136 | 3.345 | 0.45325 | 1.00000 | |
| RegionR2 | 0.889 | 3.345 | 0.13672 | 0.45940 | |
| RegionR3 | 0.22 | 3.345 | 0.62121 | 1.00000 | |
| RegionR4 | -0.053 | 3.345 | 0.93061 | 1.00000 | |
| RegionR5 | 0.877 | 3.345 | 0.01889 | 0.09301 | |
| RegionR6 | -0.353 | 3.345 | 0.46867 | 1.00000 | |
| RegionR7 | -0.636 | 3.345 | 0.37405 | 1.00000 | |
| RegionR8 | 0.192 | 3.345 | 0.80196 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -3.992 | 3.345 | 0.51028 | 1.00000 | |
| RegenerationR2 | 0.139 | 3.345 | 0.76035 | 0.97687 | |
| RegenerationR3 | -0.188 | 3.345 | 0.72219 | 0.95520 | |
| RegenerationR4 | -0.03 | 3.345 | 0.95613 | 1.00000 | |
| RegenerationR5 | -0.382 | 3.345 | 0.39140 | 0.79327 | |
| RegenerationR6 | -0.105 | 3.345 | 0.85835 | 1.00000 | |
| RegenerationBL | 0.931 | 3.345 | 0.21853 | 0.56542 | |
| RegenerationTP | 0.722 | 3.345 | 0.33833 | 0.78214 |
Genes with expression patterns similar to MligTC455_38240
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_38240 | 333 | 6.94 | Mlig455_023639 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.360 |
XRCC5 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_023639 {REF} {Length: 3137} {TRANSSPLICED} {Pfam: Ku70/Ku80 beta-barrel domain [PF02735.18, score=128.0]; Ku C terminal domain like [PF08785.13, score=59.2]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=35.1]} {Human: ENSG00000079246, XRCC5, X-ray repair cross complementing 5, [RH, Score=258, Expect=7e-75]} {Mouse: ENSMUSG00000026187, Xrcc5, X-ray repair complementing defective repair in Chinese hamster cells 5, [RH, Score=253, Expect=2e-73]} {Smed: dd_Smed_v6_8421_0_1, dd_Smed_v6_8421_0_1, [RH, Score=310, Expect=2e-95]} {RNA1509_41784, RNA1509_8513} {RNA1310_6057.1, RNA1509_41784, RNA1509_8513} {RNA1509_41784, RNA1509_8513, RNA815_2239} |
| 2. | MligTC455_46384 | 291 | 6.06 | Mlig455_007494 | Neo: - Age: - |
GTF2H1 | 1.709 | 0.754 | - | - | - | - | 0.955 | Mlig455_007494 {REF} {Length: 2990} {TRANSSPLICED} {Pfam: BSD domain [PF03909.19, score=86.2]; TFIIH p62 subunit, N-terminal domain [PF08567.13, score=52.8]} {Human: ENSG00000110768, GTF2H1, general transcription factor IIH subunit 1, [RH, Score=314, Expect=3e-99]} {Mouse: ENSMUSG00000006599, Gtf2h1, general transcription factor II H, polypeptide 1, [RH, Score=321, Expect=3e-102]} {Dmel: FBgn0033929, Tfb1, Transcription factor B1, [RH, Score=357, Expect=9e-116]} {Celegans: WBGene00019821, R02D3.3, [RH, Score=159, Expect=5e-42]} {Smed: dd_Smed_v6_10064_0_1, dd_Smed_v6_10064_0_1, [RH, Score=245, Expect=3e-73]} {RNA1509_21043, RNA1509_54813} {RNA1310_9455, RNA1509_21043, RNA1509_54813} {RNA1509_21043, RNA1509_54813, RNA815_5553} |
| 3. | MligTC455_15555 | 155 | 3.23 | Mlig455_013832, Mlig455_059929 | Neo: - Age: - |
SIX2 | 0.964 | - | - | - | 0.964 | - | - | Mlig455_013832 {REF} {Length: 1516} {TRANSSPLICED} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=154.8]; Homeodomain [PF00046.31, score=49.7]; Homeobox KN domain [PF05920.13, score=43.3]} {Human: ENSG00000170577, SIX2, SIX homeobox 2, [Score=322, Expect=1e-109]; ENSG00000126778, SIX1, SIX homeobox 1, [Score=320, Expect=5e-109]} {Mouse: ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [Score=323, Expect=5e-110]; ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [Score=321, Expect=2e-109]} {Dmel: FBgn0003460, so, sine oculis, [Score=323, Expect=1e-108]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=243, Expect=3e-79]} {Smed: dd_Smed_v6_9774_0_1, dd_Smed_v6_9774_0_1, [Score=328, Expect=1e-109]} {RNA1310_38333} {RNA815_34016} Mlig455_059929 {REF} {Length: 1578} {TRANSSPLICED} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=154.9]; Homeodomain [PF00046.31, score=49.7]; Homeobox KN domain [PF05920.13, score=43.3]} {Human: ENSG00000170577, SIX2, SIX homeobox 2, [Score=322, Expect=1e-109]; ENSG00000126778, SIX1, SIX homeobox 1, [Score=320, Expect=4e-109]} {Mouse: ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [Score=323, Expect=6e-110]; ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [Score=320, Expect=3e-109]} {Dmel: FBgn0003460, so, sine oculis, [Score=323, Expect=1e-108]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=243, Expect=3e-79]} {Smed: dd_Smed_v6_9774_0_1, dd_Smed_v6_9774_0_1, [Score=328, Expect=1e-109]} {RNA1310_38333} {RNA815_34016} |
| 4. | MligTC455_35998 | 1012 | 21.09 | Mlig455_017147 | Neo: - Age: - Regeneration-upregulated BL: 1.812 Regeneration-enriched BL: 1.812 |
DOT1L | 0.96 | - | - | - | - | - | 0.960 | Mlig455_017147 {REF} {Length: 2954} {Pfam: Histone methylation protein DOT1 [PF08123.15, score=243.1]} {Human: ENSG00000104885, DOT1L, DOT1 like histone lysine methyltransferase, [RH, Score=371, Expect=1e-112]} {Mouse: ENSMUSG00000061589, Dot1l, DOT1-like, histone H3 methyltransferase (S. cerevisiae), [RH, Score=352, Expect=6e-106]} {Dmel: FBgn0264495, gpp, grappa, [RH, Score=342, Expect=5e-102]} {Celegans: WBGene00021474, dot-1.1, DOT1 histone methyltransferase family, [RH, Score=162, Expect=2e-41]} {Smed: dd_Smed_v6_4515_0_3, dd_Smed_v6_4515_0_3, [RH, Score=361, Expect=4e-115]} {RNA1509_3518} {RNA1310_219} {RNA815_1960} |
| 5. | MligTC455_15174 | 740 | 15.42 | Mlig455_056362 | Neo: - Age: Up-Down-Down |
GAB1 | 0.955 | - | 0.955 | - | - | - | - | Mlig455_056362 {REF} {Length: 4530} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=44.7]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=24.2]} {Human: ENSG00000109458, GAB1, GRB2 associated binding protein 1, [RH, Score=58.2, Expect=2e-08]} {Mouse: ENSMUSG00000032750, Gab3, growth factor receptor bound protein 2-associated protein 3, [Score=53.1, Expect=5e-07]; ENSMUSG00000031714, Gab1, growth factor receptor bound protein 2-associated protein 1, [Score=52.4, Expect=1e-06]} {Dmel: FBgn0016794, dos, daughter of sevenless, [RH, Score=55.1, Expect=1e-07]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=51.2, Expect=8e-07]} {RNA1509_7659} {RNA1310_17916.1} {RNA815_24797} |
| 6. | MligTC455_26639 | 1485 | 30.94 | Mlig455_010272 | Neo: - Age: - Region-enriched R4: 1.211/0.01917 |
MTR | 0.953 | - | 0.953 | - | - | - | - | Mlig455_010272 {REF} {Length: 4363} {TRANSSPLICED} {Pfam: Vitamin B12 dependent methionine synthase, activation domain [PF02965.19, score=344.6]; Homocysteine S-methyltransferase [PF02574.18, score=267.4]; Pterin binding enzyme [PF00809.24, score=191.4]; B12 binding domain [PF02607.19, score=83.9]; B12 binding domain [PF02310.21, score=63.6]} {Human: ENSG00000116984, MTR, 5-methyltetrahydrofolate-homocysteine methyltransferase, [RH, Score=1599, Expect=0.0]} {Mouse: ENSMUSG00000021311, Mtr, 5-methyltetrahydrofolate-homocysteine methyltransferase, [RH, Score=1575, Expect=0.0]} {Celegans: WBGene00010988, metr-1, Probable methionine synthase, [RH, Score=1568, Expect=0.0]} {Smed: dd_Smed_v6_10302_0_1, dd_Smed_v6_10302_0_1, [RH, Score=1622, Expect=0.0]} {RNA1509_1410} {RNA1310_1766, RNA1509_1410} {RNA1509_1410, RNA815_1998} |
| 7. | MligTC455_51590 | 320 | 6.67 | Mlig455_044222 | Neo: - Age: logFC(26M/2M)=0.392 |
PARS2 | 0.951 | - | 0.951 | - | - | - | - | Mlig455_044222 {REF} {Length: 2181} {TRANSSPLICED} {Pfam: tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=104.4]} {Human: ENSG00000162396, PARS2, prolyl-tRNA synthetase 2, mitochondrial, [RH, Score=267, Expect=9e-84]} {Mouse: ENSMUSG00000043572, Pars2, prolyl-tRNA synthetase (mitochondrial)(putative), [RH, Score=267, Expect=7e-84]} {Dmel: FBgn0027082, ProRS-m, Prolyl-tRNA synthetase, mitochondrial, [RH, Score=263, Expect=1e-82]} {Celegans: WBGene00004190, pars-2, Prolyl Amino-acyl tRNA Synthetase, [RH, Score=230, Expect=3e-70]} {Smed: dd_Smed_v6_12333_0_1, dd_Smed_v6_12333_0_1, [RH, Score=298, Expect=1e-96]} {RNA1509_2645, RNA1509_54847} {RNA1310_14961.1, RNA1509_2645, RNA1509_54847} {RNA1509_2645, RNA1509_54847, RNA815_4246} |
| 8. | MligTC455_52927 | 716 | 14.91 | Mlig455_043674 | Neo: - Age: Down-Down-Up |
MAGI2 | 0.951 | - | 0.951 | - | - | - | - | Mlig455_043674 {REF} {Length: 4877} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=220.2]; PDZ domain [PF17820.3, score=142.9]; PDZ domain [PF13180.8, score=87.0]; Guanylate kinase [PF00625.23, score=42.8]; WW domain [PF00397.28, score=35.9]} {Human: ENSG00000187391, MAGI2, membrane associated guanylate kinase, WW and PDZ domain containing 2, [Score=314, Expect=5e-89]} {Mouse: ENSMUSG00000052539, Magi3, membrane associated guanylate kinase, WW and PDZ domain containing 3, [RH, Score=289, Expect=3e-80]} {Dmel: FBgn0034590, Magi, [RH, Score=214, Expect=1e-56]} {Celegans: WBGene00010444, magi-1, MAGI (Membrane Associated Guanylate kinase Inverted) homolog, [RH, Score=311, Expect=1e-89]} {Smed: dd_Smed_v6_854_0_3, dd_Smed_v6_854_0_3, [RH, Score=676, Expect=0.0]} {RNA1509_8632} {RNA1310_3024, RNA1509_8632} {RNA1509_8632, RNA815_10565} |
Berezikov Lab - 2020-2021 © ERIBA