TomoSeq data search

Data search

Results for MligTC455_38319

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_38319

7028

146.41

Mlig455_028523, Mlig455_061508

Neo: Neoblast, stringent

Age: -

Region-enriched R4: 1.249/0.00002

HMGB1

Mlig455_028523 {REF} {Length: 4694} {Pfam: HMG (high mobility group) box [PF00505.21, score=130.7]; HMG-box domain [PF09011.12, score=110.0]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [Score=167, Expect=8e-52]; ENSG00000164104, HMGB2, high mobility group box 2, [Score=161, Expect=1e-49]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=162, Expect=1e-50]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=187, Expect=3e-58]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [Score=147, Expect=2e-44]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [RH, Score=237, Expect=5e-79]} {RNA1509_561} {RNA1310_15889.1, RNA1509_561} {RNA1509_561, RNA815_4632}

Mlig455_061508 {REF} {Length: 224} {NoTransDecoderORF} {RNA1509_51801} {RNA1310_47956} {RNA815_8157}

Cumulative graph for MligTC455_38319

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.205	7.262	0.60607	1.00000
RegionR2	-0.399	7.262	0.14289	0.47052
RegionR3	-0.388	7.262	0.10802	0.57284
RegionR4	1.249	7.262	0.00000	0.00002
RegionR5	0.343	7.262	0.11812	0.34251
RegionR6	-0.052	7.262	0.82142	1.00000
RegionR7	-0.469	7.262	0.06752	0.49984
RegionR8	-0.078	7.262	0.77606	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.771	7.262	0.15945	0.90336
RegenerationR2	0.01	7.262	0.97149	1.00000
RegenerationR3	0.032	7.262	0.91544	1.00000
RegenerationR4	-1.072	7.262	0.00038	0.01793
RegenerationR5	-0.54	7.262	0.06167	0.39484
RegenerationR6	0.071	7.262	0.81233	0.98387
RegenerationBL	0.368	7.262	0.16545	0.48813
RegenerationTP	0.506	7.262	0.07652	0.44258

Genes with expression patterns similar to MligTC455_38319

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_38319	7028	146.41	Mlig455_028523, Mlig455_061508	Neo: Neoblast, stringent Age: - Region-enriched R4: 1.249/0.00002	HMGB1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_028523 {REF} {Length: 4694} {Pfam: HMG (high mobility group) box [PF00505.21, score=130.7]; HMG-box domain [PF09011.12, score=110.0]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [Score=167, Expect=8e-52]; ENSG00000164104, HMGB2, high mobility group box 2, [Score=161, Expect=1e-49]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=162, Expect=1e-50]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=187, Expect=3e-58]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [Score=147, Expect=2e-44]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [RH, Score=237, Expect=5e-79]} {RNA1509_561} {RNA1310_15889.1, RNA1509_561} {RNA1509_561, RNA815_4632} Mlig455_061508 {REF} {Length: 224} {NoTransDecoderORF} {RNA1509_51801} {RNA1310_47956} {RNA815_8157}
2.	MligTC455_21264	2714	56.54	Mlig455_001276	Neo: Neoblast, stringent Age: Down-Up-Up, logFC(26M/2M)=0.227 Regeneration-upregulated BL: 1.397 Regeneration-enriched BL: 1.397	HMGB1	1.819	-	-	-	0.868	-	0.951	Mlig455_001276 {REF} {Length: 1258} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=123.1]; HMG-box domain [PF09011.12, score=117.6]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [RH, Score=177, Expect=4e-56]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=178, Expect=2e-56]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=207, Expect=6e-66]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [RH, Score=155, Expect=2e-47]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [Score=221, Expect=1e-72]} {RNA1509_27206, RNA1509_29453, RNA1509_4386} {RNA1310_23719, RNA1509_27206, RNA1509_29453, RNA1509_4386} {RNA1509_27206, RNA1509_29453, RNA1509_4386, RNA815_12466.2}
3.	MligTC455_13172	117	2.43	Mlig455_047934	Neo: - Age: -		0.973	-	-	-	-	-	0.973	Mlig455_047934 {REF} {Length: 1321} {NoTransDecoderORF} {RNA1310_145358}
4.	MligTC455_22961	239	4.97	Mlig455_057021	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.300		0.963	-	-	-	0.963	-	-	Mlig455_057021 {REF} {Length: 7451} {Pfam: Methyltransferase domain [PF13383.8, score=103.8]; Methyltransferase FkbM domain [PF05050.14, score=38.5]} {Celegans: WBGene00012742, Y40H7A.2, [RH, Score=58.2, Expect=2e-09]} {Smed: dd_Smed_v6_3811_0_1, dd_Smed_v6_3811_0_1, [RH, Score=223, Expect=2e-67]} {RNA1509_26021} {RNA1310_7918, RNA1509_26021} {RNA1509_26021, RNA815_10399}
5.	MligTC455_41265	70	1.45	Mlig455_049891	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.562	ABR	0.953	-	-	-	-	-	0.953	Mlig455_049891 {REF} {Length: 5643} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=108.9]; PH domain [PF19057.2, score=25.6]} {Human: ENSG00000159842, ABR, ABR, RhoGEF and GTPase activating protein, [Score=172, Expect=3e-43]; ENSG00000278741, ABR, ABR, RhoGEF and GTPase activating protein, [Score=172, Expect=3e-43]; ENSG00000276016, ABR, ABR, RhoGEF and GTPase activating protein, [Score=170, Expect=6e-43]} {Mouse: ENSMUSG00000017631, Abr, active BCR-related gene, [Score=171, Expect=5e-43]} {Dmel: FBgn0025836, RhoGAP1A, Rho GTPase activating protein at 1A, [Score=190, Expect=7e-49]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=87.8, Expect=3e-17]} {Smed: dd_Smed_v6_4507_0_2, dd_Smed_v6_4507_0_2, [Score=149, Expect=2e-36]} {RNA1509_19212} {RNA1310_6725} {RNA815_6903.1}

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