M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_38767

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38767 51 1.06 Mlig455_026067, Mlig455_037311

Neo: -

Age: -

Mlig455_026067 {REF} {Length: 490} {NoTransDecoderORF} {RNA1310_69727} {RNA815_43314}

Mlig455_037311 {REF} {Length: 370} {NoTransDecoderORF} {RNA1310_129130} {RNA815_43314}

Cumulative graph for MligTC455_38767

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.486 1.121 0.99967 1.00000
RegionR2 1.262 1.121 0.27707 0.66290
RegionR3 -0.503 1.121 0.99969 1.00000
RegionR4 2.002 1.121 0.29536 0.60687
RegionR5 0.633 1.121 0.99967 1.00000
RegionR6 2.89 1.121 0.03390 0.34266
RegionR7 -1.353 1.121 0.99977 1.00000
RegionR8 -1.445 1.121 0.99979 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.313 1.121 0.29066 0.98928
RegenerationR2 1.373 1.121 0.18900 0.63295
RegenerationR3 1.767 1.121 0.21776 0.65435
RegenerationR4 1.772 1.121 0.17099 0.60772
RegenerationR5 2.534 1.121 0.05796 0.38392
RegenerationR6 -1.092 1.121 0.39755 0.73573
RegenerationBL 3.243 1.121 0.12482 0.41974
RegenerationTP 1.973 1.121 0.48546 0.89229


Genes with expression patterns similar to MligTC455_38767

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38767 51 1.06 Mlig455_026067, Mlig455_037311

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000

Mlig455_026067 {REF} {Length: 490} {NoTransDecoderORF} {RNA1310_69727} {RNA815_43314}

Mlig455_037311 {REF} {Length: 370} {NoTransDecoderORF} {RNA1310_129130} {RNA815_43314}
2. MligTC455_39829 112 2.34 Mlig455_015928

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.786

 SVOP 1.781 - - 0.966 0.815 - - Mlig455_015928 {REF} {Length: 4798} {Pfam: Sugar (and other) transporter [PF00083.26, score=137.1]; Major Facilitator Superfamily [PF07690.18, score=130.4]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=134, Expect=3e-32]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=120, Expect=8e-28]} {Dmel: FBgn0034956, CG4324, [Score=127, Expect=1e-30]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=138, Expect=3e-34]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=178, Expect=4e-48]} {RNA1509_47157} {RNA1310_47802} {RNA815_44733}
3. MligTC455_28663 25389 528.93 Mlig455_026029

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.557

Regeneration-upregulated BL: 1.816

Regeneration-enriched BL: 1.816

 1.657 - - - 0.954 0.703 - Mlig455_026029 {REF} {Length: 884} {RNA1509_18581, RNA1509_18838, RNA1509_4046, RNA1509_761, RNA1509_9421} {RNA1310_73021.2, RNA1509_18581, RNA1509_18838, RNA1509_4046, RNA1509_761, RNA1509_9421} {RNA1509_18581, RNA1509_18838, RNA1509_4046, RNA1509_761, RNA1509_9421, RNA815_26455.2}
4. MligTC455_09990 28 0.58 Mlig455_062647

Neo: -

Age: Down-Up-Up

 0.986 - - - 0.986 - - Mlig455_062647 {REF} {Length: 1162} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=35.6]} {RNA1509_19236} {RNA1310_42966} {RNA815_24864}
5. MligTC455_33962 42 0.87 Mlig455_006329

Neo: -

Age: -

 0.977 - - 0.977 - - - Mlig455_006329 {REF} {Length: 1000} {NoTransDecoderORF} {RNA1310_67418.1}
6. MligTC455_13077 69 1.44 Mlig455_008899

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_008899 {REF} {Length: 1453} {RNA1509_51032} {RNA1310_26040.1} {RNA815_18520.1}
7. MligTC455_47157 288 6 Mlig455_002803

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_002803 {REF} {Length: 431} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_4874} {RNA1310_82389} {RNA815_42310}
8. MligTC455_02138 24 0.5 Mlig455_033229

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_033229 {REF} {Length: 823} {NoTransDecoderORF} {RNA1509_51350} {RNA1310_73607.2} {RNA815_19357}
9. MligTC455_35701 66 1.37 Mlig455_010067, Mlig455_063254, Mlig455_063279

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.716/0.02468

 0.965 - - - - 0.965 -

Mlig455_010067 {REF} {Length: 2624} {Pfam: Polycystin cation channel [PF08016.14, score=46.7]} {RNA1310_62521}

Mlig455_063254 {REF} {Length: 2738} {Pfam: Polycystin cation channel [PF08016.14, score=43.3]; Lipopolysaccharide assembly protein A domain [PF06305.13, score=18.4]} {RNA1509_7418} {RNA1310_62521} {RNA815_3659}

Mlig455_063279 {REF} {Length: 2677} {Pfam: Polycystin cation channel [PF08016.14, score=46.0]} {RNA1310_62521}
10. MligTC455_23615 1709 35.6 Mlig455_005653

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.262

 C5orf49 0.962 - - - - 0.962 - Mlig455_005653 {REF} {Length: 827} {Pfam: Domain of unknown function (DUF4541) [PF15074.8, score=117.9]} {Human: ENSG00000215217, C5orf49, chromosome 5 open reading frame 49, [RH, Score=97.4, Expect=4e-26]} {Mouse: ENSMUSG00000021534, 1700001L19Rik, RIKEN cDNA 1700001L19 gene, [RH, Score=103, Expect=3e-28]} {Smed: dd_Smed_v6_6211_0_1, dd_Smed_v6_6211_0_1, [RH, Score=137, Expect=2e-42]} {RNA1509_17241, RNA1509_42216} {RNA1310_45402, RNA1509_17241, RNA1509_42216} {RNA1509_17241, RNA1509_42216, RNA815_23943.1}
11. MligTC455_41379 237 4.93 Mlig455_010916

Neo: -

Age: logFC(26M/2M)=-0.362

Region-enriched R2: 2.033/0.03884

 LRRC63 0.961 - - - 0.961 - - Mlig455_010916 {REF} {Length: 3357} {Pfam: Leucine rich repeat [PF13855.8, score=63.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=47.4]; Leucine Rich repeat [PF13516.8, score=23.2]; Leucine Rich Repeat [PF00560.35, score=22.9]} {Human: ENSG00000173988, LRRC63, leucine rich repeat containing 63, [RH, Score=197, Expect=6e-54]} {Mouse: ENSMUSG00000021997, Lrrc63, leucine rich repeat containing 63, [RH, Score=173, Expect=2e-45]} {Dmel: FBgn0038504, Sur-8, [Score=65.1, Expect=1e-10]} {Celegans: WBGene00002632, let-413, [Score=80.5, Expect=2e-15]} {Smed: dd_Smed_v6_14985_0_1, dd_Smed_v6_14985_0_1, [Score=117, Expect=6e-28]} {RNA1509_13259} {RNA1310_13580} {RNA815_3945.1}
12. MligTC455_51356 297 6.18 Mlig455_002800, Mlig455_002813

Neo: -

Age: logFC(26M/2M)=-0.335

Regeneration-upregulated BL: 4.447

Regeneration-enriched BL: 4.447

 ARNTL 0.959 - - - 0.959 - -

Mlig455_002800 {REF} {Length: 4003} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=41.7]; PAS domain [PF14598.8, score=32.2]; PAS fold [PF08447.14, score=26.1]} {Human: ENSG00000133794, ARNTL, aryl hydrocarbon receptor nuclear translocator like, [Score=174, Expect=4e-46]} {Mouse: ENSMUSG00000055116, Arntl, aryl hydrocarbon receptor nuclear translocator-like, [Score=175, Expect=2e-46]} {Dmel: FBgn0023094, cyc, cycle, [Score=147, Expect=2e-38]} {Celegans: WBGene00000095, aha-1, Aryl hydrocarbon receptor nuclear translocator homolog, [Score=117, Expect=8e-28]} {Smed: dd_Smed_v6_9171_0_1, dd_Smed_v6_9171_0_1, [Score=107, Expect=5e-24]} {RNA1509_21517} {RNA1310_20501.1} {RNA815_14602}

Mlig455_002813 {REF} {Length: 3183} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=41.7]; PAS fold [PF08447.14, score=26.6]; PAS domain [PF14598.8, score=26.0]} {Human: ENSG00000133794, ARNTL, aryl hydrocarbon receptor nuclear translocator like, [Score=172, Expect=6e-45]} {Mouse: ENSMUSG00000055116, Arntl, aryl hydrocarbon receptor nuclear translocator-like, [Score=172, Expect=2e-45]} {Dmel: FBgn0023094, cyc, cycle, [Score=146, Expect=6e-38]} {Celegans: WBGene00000095, aha-1, Aryl hydrocarbon receptor nuclear translocator homolog, [Score=116, Expect=2e-27]} {Smed: dd_Smed_v6_9171_0_1, dd_Smed_v6_9171_0_1, [Score=110, Expect=7e-25]} {RNA1509_21517} {RNA1310_20501.1} {RNA815_14602}
13. MligTC455_25686 80 1.67 Mlig455_044743

Neo: -

Age: logFC(26M/2M)=-1.283

Region-enriched R2: 5.232/0.00864

 SLC7A1 0.957 - - - - 0.957 - Mlig455_044743 {REF} {Length: 2732} {Pfam: Amino acid permease [PF13520.8, score=157.5]; Amino acid permease [PF00324.23, score=113.9]; C-terminus of AA_permease [PF13906.8, score=77.4]} {Human: ENSG00000139514, SLC7A1, solute carrier family 7 member 1, [RH, Score=587, Expect=0.0]} {Mouse: ENSMUSG00000041313, Slc7a1, solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, [RH, Score=587, Expect=0.0]; ENSMUSG00000031596, Slc7a2, solute carrier family 7 (cationic amino acid transporter, y+ system), member 2, [RH, Score=577, Expect=0.0]; ENSMUSG00000107871, AU018091, expressed sequence AU018091, [RH, Score=564, Expect=0.0]; ENSMUSG00000054753, AU018091, expressed sequence AU018091, [RH, Score=564, Expect=0.0]} {Dmel: FBgn0037203, slif, slimfast, [RH, Score=526, Expect=1e-180]} {Celegans: WBGene00015197, B0454.6, [Score=370, Expect=2e-120]} {Smed: dd_Smed_v6_16390_0_1, dd_Smed_v6_16390_0_1, [Score=456, Expect=1e-156]} {RNA1509_41407} {RNA1310_9788.2} {RNA815_3177}
14. MligTC455_17387 3097 64.53 Mlig455_009773, Mlig455_054923

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.622

 FAM221A 0.956 - - - - 0.956 -

Mlig455_009773 {REF} {Length: 2787} {Pfam: Protein FAM221A/B [PF14753.8, score=301.8]} {Human: ENSG00000188732, FAM221A, family with sequence similarity 221 member A, [RH, Score=332, Expect=6e-114]} {Mouse: ENSMUSG00000047115, Fam221a, family with sequence similarity 221, member A, [RH, Score=325, Expect=6e-111]} {Smed: dd_Smed_v6_10324_0_1, dd_Smed_v6_10324_0_1, [RH, Score=401, Expect=3e-141]} {RNA1509_39364} {RNA1310_13611.2} {RNA815_11372}

Mlig455_054923 {REF} {Length: 2730} {Pfam: Protein FAM221A/B [PF14753.8, score=301.8]} {Human: ENSG00000188732, FAM221A, family with sequence similarity 221 member A, [RH, Score=332, Expect=6e-114]} {Mouse: ENSMUSG00000047115, Fam221a, family with sequence similarity 221, member A, [RH, Score=325, Expect=6e-111]} {Smed: dd_Smed_v6_10324_0_1, dd_Smed_v6_10324_0_1, [RH, Score=401, Expect=3e-141]} {RNA1509_3690, RNA1509_39364, RNA1509_8486} {RNA1310_13611.2, RNA1509_3690, RNA1509_39364, RNA1509_8486} {RNA1509_3690, RNA1509_39364, RNA1509_8486, RNA815_11372}
15. MligTC455_23913 278 5.79 Mlig455_046225

Neo: -

Age: Up-Down-Down

 RIMBP2 0.956 - - - - 0.956 - Mlig455_046225 {REF} {Length: 9740} {TRANSSPLICED} {Pfam: Variant SH3 domain [PF14604.8, score=38.7]; Variant SH3 domain [PF07653.19, score=31.8]; SH3 domain [PF00018.30, score=22.3]; Fibronectin type III domain [PF00041.23, score=21.9]} {Human: ENSG00000060709, RIMBP2, RIMS binding protein 2, [Score=181, Expect=7e-46]; ENSG00000005379, TSPOAP1, TSPO associated protein 1, [Score=173, Expect=2e-42]} {Mouse: ENSMUSG00000029420, Rimbp2, RIMS binding protein 2, [Score=177, Expect=2e-44]} {Dmel: FBgn0262483, Rbp, RIM-binding protein, [Score=185, Expect=1e-46]} {Celegans: WBGene00006513, rimb-1, RIM Binding protein, [Score=184, Expect=1e-46]} {Smed: dd_Smed_v6_9824_0_1, dd_Smed_v6_9824_0_1, [Score=52.0, Expect=4e-06]} {RNA1509_26550, RNA1509_57848} {RNA1310_5419.1, RNA1509_26550, RNA1509_57848} {RNA1509_26550, RNA1509_57848, RNA815_3967.1}
16. MligTC455_50636 95 1.98 Mlig455_007948, Mlig455_008048, Mlig455_008049

Neo: -

Age: -

 0.956 - - - 0.956 - -

Mlig455_007948 {REF} {Length: 3635} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=22.0]; Ig-like C2-type domain [PF06328.13, score=21.9]; Immunoglobulin domain [PF00047.27, score=20.1]} {RNA1310_56409} {RNA815_31320}

Mlig455_008048 {REF} {Length: 1059} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=22.0]; Ig-like C2-type domain [PF06328.13, score=21.9]; Immunoglobulin domain [PF00047.27, score=20.1]} {RNA1310_56409}

Mlig455_008049 {REF} {Length: 367} {NoTransDecoderORF} {RNA1310_117876}
17. MligTC455_33189 347 7.24 Mlig455_041066, Mlig455_064709

Neo: -

Age: -

 LRRC7 0.95 - - - 0.950 - -

Mlig455_041066 {REF} {Length: 3640} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=117.5]; Leucine Rich repeats (2 copies) [PF12799.9, score=92.1]; PDZ domain [PF00595.26, score=34.0]; PDZ domain [PF17820.3, score=28.3]; PDZ domain [PF13180.8, score=27.0]} {Human: ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=286, Expect=9e-80]; ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=272, Expect=2e-75]} {Mouse: ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=286, Expect=3e-80]} {Dmel: FBgn0263289, scrib, scribbled, [Score=280, Expect=5e-78]} {Celegans: WBGene00002632, let-413, [Score=238, Expect=6e-67]} {Smed: dd_Smed_v6_4770_0_1, dd_Smed_v6_4770_0_1, [Score=265, Expect=2e-74]} {RNA1509_49092} {RNA1310_13850.1} {RNA815_4016}

Mlig455_064709 {REF} {Length: 3782} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=119.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=92.2]; PDZ domain [PF00595.26, score=34.3]; PDZ domain [PF17820.3, score=28.2]; PDZ domain [PF13180.8, score=26.8]} {Human: ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=280, Expect=6e-78]; ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=273, Expect=1e-75]} {Mouse: ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=281, Expect=3e-78]; ENSMUSG00000021709, Erbin, Erbb2 interacting protein, [Score=268, Expect=5e-74]} {Dmel: FBgn0263289, scrib, scribbled, [Score=276, Expect=1e-76]} {Celegans: WBGene00002632, let-413, [Score=236, Expect=2e-66]} {Smed: dd_Smed_v6_4770_0_1, dd_Smed_v6_4770_0_1, [Score=261, Expect=4e-73]} {RNA1509_49092} {RNA1310_13850.1, RNA1509_49092} {RNA1509_49092, RNA815_4016}
18. MligTC455_38577 53 1.1 Mlig455_039955, Mlig455_039969

Neo: -

Age: -

 0.95 - - 0.950 - - -

Mlig455_039955 {REF} {Length: 1584} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=21.3]} {RNA1310_21615.2} {RNA815_35576}

Mlig455_039969 {REF} {Length: 462} {NoTransDecoderORF} {RNA1310_21615.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA