TomoSeq data search

Data search

Results for MligTC455_39111

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39111

95

1.98

Mlig455_049851, Mlig455_070371

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.790

NOTCH3

Mlig455_049851 {REF} {Length: 1412} {RNA1509_19091} {RNA1310_19560} {RNA815_3356.1}

Mlig455_070371 {REF} {Length: 2329} {Human: ENSG00000074181, NOTCH3, notch 3, [Score=51.2, Expect=4e-06]; ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=50.4, Expect=6e-06]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=50.1, Expect=5e-06]} {RNA1509_19091} {RNA1310_14363.1} {RNA815_3356.1}

Cumulative graph for MligTC455_39111

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.624	1.97	0.99969	1.00000
RegionR2	1.239	1.97	0.31665	0.70749
RegionR3	-0.425	1.97	0.86323	1.00000
RegionR4	1.601	1.97	0.20599	0.48823
RegionR5	1.086	1.97	0.32613	0.66977
RegionR6	0.724	1.97	0.50326	1.00000
RegionR7	1.796	1.97	0.18924	0.79272
RegionR8	-3.397	1.97	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.68	1.97	0.99984	1.00000
RegenerationR2	-1.168	1.97	0.07403	0.44021
RegenerationR3	1.283	1.97	0.16591	0.60016
RegenerationR4	-0.171	1.97	0.83123	0.99767
RegenerationR5	-0.362	1.97	0.61802	0.91791
RegenerationR6	-0.199	1.97	0.80579	0.98010
RegenerationBL	0.439	1.97	0.69368	1.00000
RegenerationTP	2.297	1.97	0.24840	0.69568

Genes with expression patterns similar to MligTC455_39111

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39111	95	1.98	Mlig455_049851, Mlig455_070371	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.790	NOTCH3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_049851 {REF} {Length: 1412} {RNA1509_19091} {RNA1310_19560} {RNA815_3356.1} Mlig455_070371 {REF} {Length: 2329} {Human: ENSG00000074181, NOTCH3, notch 3, [Score=51.2, Expect=4e-06]; ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=50.4, Expect=6e-06]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=50.1, Expect=5e-06]} {RNA1509_19091} {RNA1310_14363.1} {RNA815_3356.1}
2.	MligTC455_42908	723	15.06	Mlig455_031591	Neo: - Age: -	SLC30A9	0.959	-	-	-	-	0.959	-	Mlig455_031591 {REF} {Length: 3235} {TRANSSPLICED} {Pfam: Initiation factor 2 subunit family [PF01008.19, score=138.5]; Cation efflux family [PF01545.23, score=97.2]} {Human: ENSG00000014824, SLC30A9, solute carrier family 30 member 9, [RH, Score=356, Expect=2e-112]} {Mouse: ENSMUSG00000029221, Slc30a9, solute carrier family 30 (zinc transporter), member 9, [RH, Score=352, Expect=3e-111]} {Dmel: FBgn0033762, ZnT49B, Zinc transporter 49B, [RH, Score=349, Expect=4e-109]} {Celegans: WBGene00022174, Y71H2AM.9, [RH, Score=258, Expect=1e-76]} {Smed: dd_Smed_v6_6526_0_1, dd_Smed_v6_6526_0_1, [RH, Score=485, Expect=2e-163]} {RNA1509_30896} {RNA1310_9463} {RNA815_3145.1}
3.	MligTC455_42683	399	8.31	Mlig455_065293	Neo: - Age: - Region-enriched R4: 2.217/0.01915	SLC22A3	0.957	-	-	-	-	0.957	-	Mlig455_065293 {REF} {Length: 5681} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=106.5]; Major Facilitator Superfamily [PF07690.18, score=102.9]} {Human: ENSG00000146477, SLC22A3, solute carrier family 22 member 3, [RH, Score=310, Expect=3e-98]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [RH, Score=308, Expect=1e-97]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [RH, Score=297, Expect=3e-93]} {Mouse: ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [RH, Score=322, Expect=3e-103]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [RH, Score=377, Expect=1e-124]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [RH, Score=289, Expect=3e-90]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [RH, Score=261, Expect=4e-80]} {RNA1509_7807} {RNA1310_8912, RNA1509_7807} {RNA1509_7807, RNA815_6870}
4.	MligTC455_22352	1167	24.32	Mlig455_009894, Mlig455_057000, Mlig455_057060	Neo: Int S/G2/M Age: -		0.954	-	-	-	-	0.954	-	Mlig455_009894 {REF} {Length: 1392} {RNA1509_15639} {RNA1310_66603} {RNA815_37337} Mlig455_057000 {REF} {Length: 1608} {RNA1509_15639} {RNA1310_66603} {RNA815_37337} Mlig455_057060 {REF} {Length: 548} {NoTransDecoderORF} {RNA1509_15639, RNA1509_43106, RNA1509_48079} {RNA1310_66603, RNA1509_15639, RNA1509_43106, RNA1509_48079} {RNA1509_15639, RNA1509_43106, RNA1509_48079, RNA815_37337}
5.	MligTC455_00722	98	2.04	Mlig455_029527	Neo: - Age: -		0.953	-	-	-	-	-	0.953	Mlig455_029527 {REF} {Length: 63} {NoTransDecoderORF}
6.	MligTC455_19319	119	2.49	Mlig455_020560	Neo: - Age: - Region-enriched R2: 3.039/0.00928		0.953	-	-	-	-	-	0.953	Mlig455_020560 {REF} {Length: 2838} {TRANSSPLICED} {RNA1509_47202, RNA1509_50453} {RNA1310_16726, RNA1509_47202} {RNA1509_47202, RNA815_9108.1}
7.	MligTC455_14030	366	7.63	Mlig455_038896	Neo: - Age: logFC(26M/2M)=0.245 Region-enriched R4: 2.424/0.01165 Region-enriched R3: 2.197/0.00331	NEB	0.951	-	-	-	-	0.951	-	Mlig455_038896 {REF} {Length: 2746} {Pfam: Variant SH3 domain [PF14604.8, score=50.8]; SH3 domain [PF00018.30, score=38.8]} {Human: ENSG00000183091, NEB, nebulin, [Score=86.3, Expect=8e-18]} {Mouse: ENSMUSG00000026950, Neb, nebulin, [Score=83.6, Expect=4e-17]; ENSMUSG00000053702, Nebl, nebulette, [Score=80.9, Expect=4e-16]} {Dmel: FBgn0063485, Lasp, [Score=73.9, Expect=9e-15]} {Celegans: WBGene00018367, F42H10.3, LIM and SH3 domain protein F42H10.3, [Score=70.5, Expect=2e-13]} {Smed: dd_Smed_v6_1218_0_1, dd_Smed_v6_1218_0_1, [Score=68.9, Expect=1e-13]} {RNA1509_45682} {RNA1310_28671} {RNA815_18525.1}

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