TomoSeq data search

Data search

Results for MligTC455_39114

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39114

173

3.60

Mlig455_069991

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.684

NOTCH1

Mlig455_069991 {REF} {Length: 2929} {Pfam: EGF-like domain [PF00008.29, score=21.7]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=58.2, Expect=7e-08]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=62.8, Expect=2e-09]; ENSMUSG00000038146, Notch3, notch 3, [Score=62.0, Expect=3e-09]; ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=62.0, Expect=3e-09]} {Dmel: FBgn0013733, shot, short stop, [Score=57.8, Expect=5e-08]} {Smed: dd_Smed_v6_4789_0_1, dd_Smed_v6_4789_0_1, [Score=49.3, Expect=1e-05]} {RNA1509_19091} {RNA1310_14363.1} {RNA815_3356.1}

Cumulative graph for MligTC455_39114

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.136	2.462	0.26612	0.91526
RegionR2	-0.32	2.462	0.93308	1.00000
RegionR3	1.462	2.462	0.07900	0.49765
RegionR4	1.073	2.462	0.31627	0.63220
RegionR5	-0.542	2.462	0.96406	1.00000
RegionR6	1.212	2.462	0.18844	0.75448
RegionR7	1.232	2.462	0.27655	0.90752
RegionR8	1.018	2.462	0.45557	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.299	2.462	1.00000	1.00000
RegenerationR2	0.954	2.462	0.16116	0.59857
RegenerationR3	0.227	2.462	0.74148	0.96137
RegenerationR4	0.69	2.462	0.35099	0.78088
RegenerationR5	1.261	2.462	0.09803	0.47869
RegenerationR6	0.692	2.462	0.31462	0.66203
RegenerationBL	0.009	2.462	0.99334	1.00000
RegenerationTP	0.614	2.462	0.48830	0.89402

Genes with expression patterns similar to MligTC455_39114

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39114	173	3.6	Mlig455_069991	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.684	NOTCH1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_069991 {REF} {Length: 2929} {Pfam: EGF-like domain [PF00008.29, score=21.7]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=58.2, Expect=7e-08]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=62.8, Expect=2e-09]; ENSMUSG00000038146, Notch3, notch 3, [Score=62.0, Expect=3e-09]; ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=62.0, Expect=3e-09]} {Dmel: FBgn0013733, shot, short stop, [Score=57.8, Expect=5e-08]} {Smed: dd_Smed_v6_4789_0_1, dd_Smed_v6_4789_0_1, [Score=49.3, Expect=1e-05]} {RNA1509_19091} {RNA1310_14363.1} {RNA815_3356.1}
2.	MligTC455_15916	605	12.6	Mlig455_057343	Neo: Int S/G2/M Age: -	RANBP3	0.989	-	-	-	-	0.989	-	Mlig455_057343 {REF} {Length: 3857} {TRANSSPLICED} {Pfam: RanBP1 domain [PF00638.20, score=35.9]} {Human: ENSG00000031823, RANBP3, RAN binding protein 3, [RH, Score=121, Expect=4e-29]} {Mouse: ENSMUSG00000002372, Ranbp3, RAN binding protein 3, [RH, Score=116, Expect=8e-28]} {Dmel: FBgn0039110, RanBP3, Ran binding protein 3, [RH, Score=77.0, Expect=6e-15]} {Smed: dd_Smed_v6_8752_0_1, dd_Smed_v6_8752_0_1, [RH, Score=83.6, Expect=1e-17]} {RNA1509_14083, RNA1509_38534} {RNA1310_16509.2, RNA1509_14083, RNA1509_38534} {RNA1509_14083, RNA1509_38534, RNA815_7036}
3.	MligTC455_47209	207	4.31	Mlig455_020211	Neo: - Age: -	PAX2	0.982	-	-	0.982	-	-	-	Mlig455_020211 {REF} {Length: 2234} {Pfam: 'Paired box' domain [PF00292.20, score=222.0]} {Human: ENSG00000075891, PAX2, paired box 2, [RH, Score=235, Expect=2e-71]; ENSG00000125618, PAX8, paired box 8, [RH, Score=229, Expect=1e-68]; ENSG00000196092, PAX5, paired box 5, [RH, Score=228, Expect=5e-70]} {Mouse: ENSMUSG00000004231, Pax2, paired box 2, [RH, Score=235, Expect=1e-71]; ENSMUSG00000026976, Pax8, paired box 8, [RH, Score=229, Expect=8e-69]; ENSMUSG00000014030, Pax5, paired box 5, [RH, Score=227, Expect=9e-70]} {Dmel: FBgn0005561, sv, shaven, [RH, Score=240, Expect=1e-69]} {Celegans: WBGene00003938, pax-2, PAX (Paired box) transcription factor, [RH, Score=209, Expect=2e-62]} {Smed: dd_Smed_v6_10219_0_1, dd_Smed_v6_10219_0_1, [RH, Score=250, Expect=3e-80]} {RNA1509_42244} {RNA1310_21893.1, RNA1509_42244} {RNA1509_42244, RNA815_29018}
4.	MligTC455_12268	21	0.44	Mlig455_020458	Neo: - Age: -		0.969	-	-	-	-	-	0.969	Mlig455_020458 {REF} {Length: 1693} {Pfam: TATA element modulatory factor 1 DNA binding [PF12329.10, score=20.4]} {RNA1509_10012, RNA1509_37655} {RNA1310_23404.1, RNA1509_10012, RNA1509_37655} {RNA1509_10012, RNA1509_37655, RNA815_8343.1}
5.	MligTC455_13080	144	2.99	Mlig455_034913	Neo: - Age: Down-Up-Up		0.957	-	-	0.957	-	-	-	Mlig455_034913 {REF} {Length: 3833} {Pfam: Tetraspanin family [PF00335.22, score=32.2]} {RNA1509_13981} {RNA1310_616.2} {RNA815_2054.1}
6.	MligTC455_43303	180	3.75	Mlig455_001813	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.918		0.957	-	-	-	-	-	0.957	Mlig455_001813 {REF} {Length: 2537} {RNA1509_14667} {RNA1310_23413} {RNA815_13658}

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