M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39131

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39131 252 5.25 Mlig455_064329

Neo: -

Age: logFC(26M/2M)=-0.399

 SLC16A12 Mlig455_064329 {REF} {Length: 2601} {Pfam: Major Facilitator Superfamily [PF07690.18, score=127.6]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=122, Expect=9e-29]; ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=120, Expect=2e-28]} {Mouse: ENSMUSG00000041920, Slc16a6, solute carrier family 16 (monocarboxylic acid transporters), member 6, [Score=121, Expect=2e-28]; ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=119, Expect=5e-28]; ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=117, Expect=1e-27]} {Dmel: FBgn0033028, CG11665, [Score=147, Expect=6e-37]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=105, Expect=1e-23]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=116, Expect=2e-27]} {RNA1509_22159} {RNA1310_6776, RNA1509_22159} {RNA1509_22159, RNA815_11602}

Cumulative graph for MligTC455_39131

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.008 2.86 0.59982 1.00000
RegionR2 0.94 2.86 0.17076 0.51676
RegionR3 -0.257 2.86 0.69283 1.00000
RegionR4 0.439 2.86 0.48871 0.81593
RegionR5 -0.065 2.86 0.91465 1.00000
RegionR6 -0.266 2.86 0.69071 1.00000
RegionR7 -0.418 2.86 0.65432 1.00000
RegionR8 0.636 2.86 0.54187 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.561 2.86 0.46386 1.00000
RegenerationR2 0.33 2.86 0.50122 0.87200
RegenerationR3 0.017 2.86 0.97869 1.00000
RegenerationR4 -0.682 2.86 0.24895 0.69710
RegenerationR5 0.32 2.86 0.58544 0.90306
RegenerationR6 0.301 2.86 0.64152 0.89397
RegenerationBL -1.362 2.86 0.16088 0.48096
RegenerationTP -0.888 2.86 0.37049 0.80820


Genes with expression patterns similar to MligTC455_39131

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39131 252 5.25 Mlig455_064329

Neo: -

Age: logFC(26M/2M)=-0.399

 SLC16A12 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064329 {REF} {Length: 2601} {Pfam: Major Facilitator Superfamily [PF07690.18, score=127.6]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=122, Expect=9e-29]; ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=120, Expect=2e-28]} {Mouse: ENSMUSG00000041920, Slc16a6, solute carrier family 16 (monocarboxylic acid transporters), member 6, [Score=121, Expect=2e-28]; ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=119, Expect=5e-28]; ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=117, Expect=1e-27]} {Dmel: FBgn0033028, CG11665, [Score=147, Expect=6e-37]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=105, Expect=1e-23]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=116, Expect=2e-27]} {RNA1509_22159} {RNA1310_6776, RNA1509_22159} {RNA1509_22159, RNA815_11602}
2. MligTC455_32428 352 7.33 Mlig455_013946

Neo: -

Age: -

 NWD2 2.592 - - - 0.864 0.976 0.752 Mlig455_013946 {REF} {Length: 7112} {TRANSSPLICED} {Pfam: NACHT domain [PF05729.14, score=45.6]; AAA ATPase domain [PF13191.8, score=41.4]; Domain of unknown function (DUF4062) [PF13271.8, score=40.6]; AAA domain [PF13401.8, score=24.5]; ATPase domain predominantly from Archaea [PF01637.20, score=20.2]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=431, Expect=4e-131]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=426, Expect=2e-129]} {Dmel: FBgn0038397, CG10185, [Score=520, Expect=4e-164]} {Celegans: WBGene00020254, T05C3.2, [Score=530, Expect=2e-167]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=323, Expect=7e-94]} {RNA1509_3054} {RNA1310_322} {RNA815_139.1}
3. MligTC455_34741 295 6.15 Mlig455_034180

Neo: -

Age: -

 2.528 - - - 0.806 0.953 0.769 Mlig455_034180 {REF} {Length: 3114} {TRANSSPLICED} {RNA1509_35011} {RNA1310_5164} {RNA815_7386}
4. MligTC455_18977 556 11.59 Mlig455_050730, Mlig455_050740

Neo: -

Age: Down-Up-Down

 ALS2CR12 1.74 - - 0.786 - - 0.954

Mlig455_050730 {REF} {Length: 3789} {TRANSSPLICED} {Human: ENSG00000155749, ALS2CR12, amyotrophic lateral sclerosis 2 chromosome region 12, [RH, Score=61.6, Expect=1e-09]} {Smed: dd_Smed_v6_10132_0_1, dd_Smed_v6_10132_0_1, [RH, Score=146, Expect=7e-38]} {RNA1509_18099} {RNA1310_18415} {RNA815_7356}

Mlig455_050740 {REF} {Length: 3786} {TRANSSPLICED} {Human: ENSG00000155749, ALS2CR12, amyotrophic lateral sclerosis 2 chromosome region 12, [RH, Score=61.6, Expect=1e-09]} {Smed: dd_Smed_v6_10132_0_1, dd_Smed_v6_10132_0_1, [RH, Score=146, Expect=7e-38]} {RNA1509_18099} {RNA1310_18415, RNA1509_18099} {RNA1509_18099, RNA815_7356}
5. MligTC455_36985 363 7.57 Mlig455_046905

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.516

 SCNN1A 1.737 - - - - 0.971 0.766 Mlig455_046905 {REF} {Length: 2490} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=171.1]} {Human: ENSG00000111319, SCNN1A, sodium channel epithelial 1 alpha subunit, [Score=68.6, Expect=2e-11]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=67.0, Expect=3e-11]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=58.2, Expect=1e-08]} {Smed: dd_Smed_v6_29341_0_1, dd_Smed_v6_29341_0_1, [Score=100, Expect=2e-22]} {RNA1509_33610} {RNA1310_13314.1, RNA1509_33610} {RNA1509_33610, RNA815_4277}
6. MligTC455_18036 165 3.45 Mlig455_019729

Neo: -

Age: -

 1.68 - - 0.967 - - 0.713 Mlig455_019729 {REF} {Length: 788} {NoTransDecoderORF} {RNA1509_37916} {RNA1310_24367} {RNA815_40336}
7. MligTC455_44721 99 2.06 Mlig455_022551

Neo: -

Age: Down-Up-Down

 FBXO36 1.679 - - 0.966 0.713 - - Mlig455_022551 {REF} {Length: 4314} {Pfam: F-box domain [PF00646.35, score=29.8]; F-box-like [PF12937.9, score=27.3]} {Human: ENSG00000153832, FBXO36, F-box protein 36, [RH, Score=90.1, Expect=1e-20]} {Mouse: ENSMUSG00000073633, Fbxo36, F-box protein 36, [Score=86.7, Expect=3e-19]} {Smed: dd_Smed_v6_5335_0_1, dd_Smed_v6_5335_0_1, [Score=99.0, Expect=6e-23]} {RNA1509_10158} {RNA1310_19945} {RNA815_8314}
8. MligTC455_47525 119 2.49 Mlig455_030977

Neo: -

Age: Down-Up-Up

Region-enriched R2: 3.232/0.02097

 CALM2 1.675 - - 0.957 - - 0.718 Mlig455_030977 {REF} {Length: 1161} {Pfam: EF hand [PF00036.34, score=76.5]; EF-hand domain pair [PF13499.8, score=73.7]; EF-hand domain [PF13405.8, score=66.7]; EF-hand domain [PF14658.8, score=42.2]; EF hand [PF13202.8, score=35.1]; EF-hand domain pair [PF13833.8, score=33.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=30.9]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=151, Expect=4e-47]; ENSG00000198668, CALM1, calmodulin 1, [Score=151, Expect=4e-47]; ENSG00000160014, CALM3, calmodulin 3, [Score=151, Expect=4e-47]} {Mouse: ENSMUSG00000036438, Calm2, calmodulin 2, [Score=151, Expect=3e-47]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=151, Expect=3e-47]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=151, Expect=3e-47]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=152, Expect=8e-48]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=151, Expect=1e-47]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=151, Expect=1e-47]} {RNA1310_31633} {RNA815_34040}
9. MligTC455_47360 146 3.04 Mlig455_010859

Neo: -

Age: logFC(26M/2M)=-0.662

 ECI1 0.969 - - 0.969 - - - Mlig455_010859 {REF} {Length: 2083} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=83.1]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=20.5]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [Score=67.4, Expect=5e-12]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [Score=67.0, Expect=6e-12]} {Dmel: FBgn0032161, CG4594, [Score=67.8, Expect=3e-12]} {RNA1509_13854} {RNA1310_19425.1} {RNA815_17367}
10. MligTC455_36378 34 0.71 Mlig455_046249

Neo: -

Age: -

Region-enriched R5: 3.006/0.04602

 NWD2 0.968 - - - - 0.968 - Mlig455_046249 {REF} {Length: 5234} {Pfam: AAA ATPase domain [PF13191.8, score=37.9]; NACHT domain [PF05729.14, score=28.9]; WD domain, G-beta repeat [PF00400.34, score=27.1]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=363, Expect=1e-101]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=355, Expect=2e-99]} {Dmel: FBgn0038397, CG10185, [Score=827, Expect=0.0]} {Celegans: WBGene00020254, T05C3.2, [Score=827, Expect=0.0]} {Smed: dd_Smed_v6_11085_0_2, dd_Smed_v6_11085_0_2, [Score=336, Expect=2e-93]} {RNA1310_71275}
11. MligTC455_34011 72 1.5 Mlig455_033063

Neo: -

Age: -

 KCNC1 0.962 - - 0.962 - - - Mlig455_033063 {REF} {Length: 4318} {Pfam: Ion transport protein [PF00520.33, score=148.3]; BTB/POZ domain [PF02214.24, score=101.2]; Ion channel [PF07885.18, score=44.0]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [RH, Score=426, Expect=1e-141]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [RH, Score=424, Expect=2e-140]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [RH, Score=407, Expect=6e-134]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [RH, Score=426, Expect=7e-142]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [RH, Score=411, Expect=2e-135]; ENSMUSG00000062785, Kcnc3, potassium voltage gated channel, Shaw-related subfamily, member 3, [RH, Score=409, Expect=5e-133]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [RH, Score=710, Expect=0.0]} {Celegans: WBGene00008819, shw-1, SHaW family of potassium channels, [RH, Score=587, Expect=0.0]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [RH, Score=690, Expect=0.0]} {RNA1509_54375} {RNA1310_15083.1} {RNA815_13734}
12. MligTC455_19007 1131 23.57 Mlig455_044120

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_044120 {REF} {Length: 3090} {TRANSSPLICED} {Smed: dd_Smed_v6_14979_0_1, dd_Smed_v6_14979_0_1, [RH, Score=170, Expect=8e-50]} {RNA1509_26326, RNA1509_52456} {RNA1310_23856, RNA1509_26326, RNA1509_52456} {RNA1509_26326, RNA1509_52456, RNA815_10081}
13. MligTC455_25591 52 1.09 Mlig455_025142

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_025142 {REF} {Length: 1407} {Pfam: Exo70 exocyst complex subunit [PF03081.17, score=20.0]} {RNA1509_10776} {RNA1310_52447} {RNA815_26667}
14. MligTC455_30663 166 3.46 Mlig455_039624

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_039624 {REF} {Length: 905} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=22.2} {RNA1509_43863} {RNA1310_12417.1} {RNA815_12852.1}
15. MligTC455_42968 1407 29.31 Mlig455_016645

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.499

 CCDC105 0.955 - - - 0.955 - - Mlig455_016645 {REF} {Length: 2773} {Pfam: Tektin family [PF03148.16, score=79.1]} {Human: ENSG00000160994, CCDC105, coiled-coil domain containing 105, [RH, Score=121, Expect=1e-29]} {Mouse: ENSMUSG00000078442, Ccdc105, coiled-coil domain containing 105, [RH, Score=131, Expect=3e-33]} {Smed: dd_Smed_v6_14773_0_1, dd_Smed_v6_14773_0_1, [RH, Score=226, Expect=3e-70]} {RNA1509_10605, RNA1509_18742, RNA1509_43341} {RNA1310_6775.1, RNA1509_10605, RNA1509_18742, RNA1509_43341} {RNA1509_10605, RNA1509_18742, RNA1509_43341, RNA815_2314.1}
16. MligTC455_26414 375 7.8 Mlig455_001503

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_001503 {REF} {Length: 3655} {TRANSSPLICED} {Pfam: Family of unknown function (DUF5580) [PF17743.3, score=85.6]} {Smed: dd_Smed_v6_9326_0_1, dd_Smed_v6_9326_0_1, [Score=167, Expect=1e-44]} {RNA1509_4141} {RNA1310_6622.2} {RNA815_8857}
17. MligTC455_43354 268 5.59 Mlig455_058155

Neo: -

Age: Down-Up-Up

 0.954 - - - - - 0.954 Mlig455_058155 {REF} {Length: 2698} {Smed: dd_Smed_v6_9265_0_1, dd_Smed_v6_9265_0_1, [RH, Score=110, Expect=3e-27]} {RNA1509_52409, RNA1509_59769} {RNA1310_21358, RNA1509_52409} {RNA1509_52409, RNA815_21652}
18. MligTC455_53681 335 6.99 Mlig455_064921

Neo: -

Age: -

Region-enriched R2: 6.469/0.00000

 0.952 - - - - 0.952 - Mlig455_064921 {REF} {Length: 1504} {Pfam: PAN domain [PF00024.28, score=19.3]} {RNA1310_33258} {RNA815_17150}
19. MligTC455_09847 49 1.03 Mlig455_008171, Mlig455_008210, Mlig455_069594

Neo: -

Age: Down-Up-Up

 AL031281.2, CDC42 0.95 - - 0.950 - - -

Mlig455_008171 {REF} {Length: 849} {Pfam: Ras family [PF00071.24, score=78.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.3]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=140, Expect=2e-41]; ENSG00000070831, CDC42, cell division cycle 42, [Score=140, Expect=2e-41]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=140, Expect=1e-41]} {Dmel: FBgn0010341, Cdc42, [Score=136, Expect=3e-40]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=143, Expect=3e-43]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=122, Expect=5e-35]} {RNA1310_50317} {RNA815_24750}

Mlig455_008210 {REF} {Length: 1780} {Pfam: Ras family [PF00071.24, score=103.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.8]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=170, Expect=1e-53]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=170, Expect=1e-53]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=170, Expect=9e-54]} {Dmel: FBgn0010341, Cdc42, [Score=174, Expect=3e-55]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=177, Expect=2e-56]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=159, Expect=8e-50]} {RNA1310_50317} {RNA815_24750}

Mlig455_069594 {REF} {Length: 948} {Pfam: Ras family [PF00071.24, score=35.4]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=85.1, Expect=3e-19]; ENSG00000070831, CDC42, cell division cycle 42, [Score=85.1, Expect=3e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=85.1, Expect=2e-19]} {Dmel: FBgn0010341, Cdc42, [Score=80.1, Expect=9e-18]} {Celegans: WBGene00015646, mlt-10, [Score=164, Expect=7e-46]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=70.1, Expect=3e-14]} {RNA1310_50317} {RNA815_24750}
20. MligTC455_42154 1301 27.11 Mlig455_057280, Mlig455_059618

Neo: -

Age: logFC(26M/2M)=-0.356

Region-enriched R2: 1.850/0.00451
Region-enriched R3: 1.206/0.02005

 EFCAB5 0.95 - - - 0.950 - -

Mlig455_057280 {REF} {Length: 5873} {Pfam: GAF domain [PF01590.28, score=28.1]; EF hand [PF00036.34, score=21.8]; EF-hand domain [PF13405.8, score=20.6]} {Human: ENSG00000176927, EFCAB5, EF-hand calcium binding domain 5, [RH, Score=399, Expect=2e-115]} {Mouse: ENSMUSG00000050944, Efcab5, EF-hand calcium binding domain 5, [RH, Score=367, Expect=8e-105]} {Smed: dd_Smed_v6_8209_0_1, dd_Smed_v6_8209_0_1, [RH, Score=529, Expect=2e-164]} {RNA1509_1330} {RNA1310_1624} {RNA815_449}

Mlig455_059618 {REF} {Length: 5232} {TRANSSPLICED} {Pfam: GAF domain [PF01590.28, score=28.2]; EF hand [PF00036.34, score=21.8]; EF-hand domain [PF13405.8, score=20.7]} {Human: ENSG00000176927, EFCAB5, EF-hand calcium binding domain 5, [RH, Score=400, Expect=6e-116]} {Mouse: ENSMUSG00000050944, Efcab5, EF-hand calcium binding domain 5, [RH, Score=368, Expect=2e-105]} {Smed: dd_Smed_v6_8209_0_1, dd_Smed_v6_8209_0_1, [RH, Score=528, Expect=4e-164]} {RNA1509_1330, RNA1509_26864} {RNA1310_1439, RNA1509_26864} {RNA1509_26864, RNA815_449}
21. MligTC455_53533 482 10.04 Mlig455_002907

Neo: -

Age: -

 MAP2K4 0.95 - - - 0.950 - - Mlig455_002907 {REF} {Length: 2602} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=183.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=130.3]; Kinase-like [PF14531.8, score=33.0]; ABC1 atypical kinase-like domain [PF03109.18, score=18.8]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [Score=394, Expect=1e-135]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [Score=394, Expect=7e-136]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=369, Expect=4e-126]} {Celegans: WBGene00003368, mkk-4, MAP kinase kinase mkk-4, [RH, Score=292, Expect=9e-97]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=372, Expect=6e-128]} {RNA1509_10967} {RNA1310_14630, RNA1509_10967} {RNA1509_10967, RNA815_5662}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA