TomoSeq data search

Data search

Results for MligTC455_39341

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39341

41

0.85

Mlig455_046862

Neo: -

Age: Up-Up-Down

TRPM3

Mlig455_046862 {REF} {Length: 7430} {Pfam: SLOG in TRPM [PF18139.3, score=98.7]; Ankyrin repeats (3 copies) [PF12796.9, score=47.4]; Ion transport protein [PF00520.33, score=43.4]; Ankyrin repeats (many copies) [PF13857.8, score=36.0]; Ankyrin repeat [PF13606.8, score=33.6]; Ankyrin repeat [PF00023.32, score=27.9]; SLOG in TRPM, prokaryote [PF18171.3, score=22.8]; Ankyrin repeats (many copies) [PF13637.8, score=22.2]; Polycystin cation channel [PF08016.14, score=19.2]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=250, Expect=3e-66]; ENSG00000144481, TRPM8, transient receptor potential cation channel subfamily M member 8, [Score=244, Expect=2e-65]; ENSG00000070985, TRPM5, transient receptor potential cation channel subfamily M member 5, [Score=240, Expect=9e-64]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=249, Expect=5e-66]; ENSMUSG00000036251, Trpm8, transient receptor potential cation channel, subfamily M, member 8, [Score=242, Expect=9e-65]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=243, Expect=4e-64]} {Celegans: WBGene00001795, gtl-1, GTL-1; Gon-Two Like (TRP subfamily), [Score=146, Expect=9e-35]} {Smed: dd_Smed_v6_17857_0_1, dd_Smed_v6_17857_0_1, [Score=465, Expect=7e-140]} {RNA1310_48255} {RNA815_46023}

Cumulative graph for MligTC455_39341

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.848	1.4	1.00000	1.00000
RegionR2	-0.279	1.4	0.75714	1.00000
RegionR3	2.063	1.4	0.09242	0.53500
RegionR4	3.373	1.4	0.01875	0.09736
RegionR5	1.209	1.4	0.29522	0.62882
RegionR6	0.154	1.4	0.65961	1.00000
RegionR7	-2.932	1.4	0.99978	1.00000
RegionR8	-2.742	1.4	0.99977	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.49	1.4	0.99990	1.00000
RegenerationR2	-1.573	1.4	0.20087	0.64726
RegenerationR3	-1.2	1.4	0.19567	0.63087
RegenerationR4	-0.987	1.4	0.31268	0.75222
RegenerationR5	0.65	1.4	0.46878	0.84132
RegenerationR6	-0.355	1.4	0.79294	0.97366
RegenerationBL	3.574	1.4	0.05542	0.27248
RegenerationTP	2.567	1.4	0.34637	0.78799

Genes with expression patterns similar to MligTC455_39341

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39341	41	0.85	Mlig455_046862	Neo: - Age: Up-Up-Down	TRPM3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_046862 {REF} {Length: 7430} {Pfam: SLOG in TRPM [PF18139.3, score=98.7]; Ankyrin repeats (3 copies) [PF12796.9, score=47.4]; Ion transport protein [PF00520.33, score=43.4]; Ankyrin repeats (many copies) [PF13857.8, score=36.0]; Ankyrin repeat [PF13606.8, score=33.6]; Ankyrin repeat [PF00023.32, score=27.9]; SLOG in TRPM, prokaryote [PF18171.3, score=22.8]; Ankyrin repeats (many copies) [PF13637.8, score=22.2]; Polycystin cation channel [PF08016.14, score=19.2]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=250, Expect=3e-66]; ENSG00000144481, TRPM8, transient receptor potential cation channel subfamily M member 8, [Score=244, Expect=2e-65]; ENSG00000070985, TRPM5, transient receptor potential cation channel subfamily M member 5, [Score=240, Expect=9e-64]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=249, Expect=5e-66]; ENSMUSG00000036251, Trpm8, transient receptor potential cation channel, subfamily M, member 8, [Score=242, Expect=9e-65]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=243, Expect=4e-64]} {Celegans: WBGene00001795, gtl-1, GTL-1; Gon-Two Like (TRP subfamily), [Score=146, Expect=9e-35]} {Smed: dd_Smed_v6_17857_0_1, dd_Smed_v6_17857_0_1, [Score=465, Expect=7e-140]} {RNA1310_48255} {RNA815_46023}
2.	MligTC455_04626	114	2.37	Mlig455_056977	Neo: - Age: logFC(26M/2M)=-0.594	FHAD1	0.976	-	-	0.976	-	-	-	Mlig455_056977 {REF} {Length: 5197} {TRANSSPLICED} {Pfam: FHA domain [PF00498.28, score=36.8]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=33.1]} {Human: ENSG00000142621, FHAD1, forkhead associated phosphopeptide binding domain 1, [Score=130, Expect=1e-29]} {Mouse: ENSMUSG00000116181, Fhad1, forkhead-associated (FHA) phosphopeptide binding domain 1, [Score=127, Expect=3e-29]; ENSMUSG00000051435, Fhad1, forkhead-associated (FHA) phosphopeptide binding domain 1, [Score=127, Expect=3e-29]} {Smed: dd_Smed_v6_14350_0_1, dd_Smed_v6_14350_0_1, [Score=252, Expect=2e-68]} {RNA1509_11172} {RNA1310_2117.1, RNA1509_11172} {RNA1509_11172, RNA815_6949}
3.	MligTC455_33725	46	0.96	Mlig455_059862	Neo: - Age: -		0.974	-	-	-	-	-	0.974	Mlig455_059862 {REF} {Length: 2526} {tRNA: Asp(GTC), score=67.3} {RNA1310_22634} {RNA815_27671}
4.	MligTC455_08565	49	1.03	Mlig455_032295	Neo: - Age: Up-Up-Down, logFC(26M/2M)=1.719	HPGD	0.959	-	-	-	-	-	0.959	Mlig455_032295 {REF} {Length: 1065} {Pfam: short chain dehydrogenase [PF00106.27, score=98.2]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=70.9]; NAD dependent epimerase/dehydratase family [PF01370.23, score=32.2]; KR domain [PF08659.12, score=30.5]; GDP-mannose 4,6 dehydratase [PF16363.7, score=24.3]; Polysaccharide biosynthesis protein [PF02719.17, score=18.8]} {Human: ENSG00000164120, HPGD, 15-hydroxyprostaglandin dehydrogenase, [Score=121, Expect=4e-33]} {Mouse: ENSMUSG00000031613, Hpgd, hydroxyprostaglandin dehydrogenase 15 (NAD), [Score=117, Expect=6e-32]} {Dmel: FBgn0011693, Pdh, Photoreceptor dehydrogenase, [Score=90.5, Expect=1e-21]} {Celegans: WBGene00000968, dhs-4, DeHydrogenases, Short chain, [Score=69.3, Expect=6e-14]} {Smed: dd_Smed_v6_2263_0_1, dd_Smed_v6_2263_0_1, [Score=53.9, Expect=7e-09]} {RNA1509_33517} {RNA1310_34765.1} {RNA815_8749.1}
5.	MligTC455_08244	42	0.88	Mlig455_022615	Neo: - Age: Down-Up-Up Region-enriched R4: 4.187/0.02837 Region-enriched R5: 3.530/0.03280	VAV1	0.958	-	-	-	-	-	0.958	Mlig455_022615 {REF} {Length: 2307} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=45.1]; SH2 domain [PF00017.26, score=37.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=30.6]; Calponin homology (CH) domain [PF00307.33, score=27.2]} {Human: ENSG00000141968, VAV1, vav guanine nucleotide exchange factor 1, [Score=73.9, Expect=4e-13]} {Mouse: ENSMUSG00000034116, Vav1, vav 1 oncogene, [Score=53.5, Expect=8e-07]; ENSMUSG00000009621, Vav2, vav 2 oncogene, [Score=52.4, Expect=2e-06]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=65.9, Expect=4e-11]} {RNA1509_11075} {RNA1310_9537.1} {RNA815_3290}
6.	MligTC455_35711	145	3.01	Mlig455_059754, Mlig455_059779	Neo: - Age: - Region-enriched R5: 1.532/0.04866	ZC3HC1	0.953	-	-	-	-	0.953	-	Mlig455_059754 {REF} {Length: 597} {Pfam: Rsm1-like [PF08600.12, score=37.1]} {RNA1509_48673} {RNA1310_19146} {RNA815_7920} Mlig455_059779 {REF} {Length: 3181} {Pfam: C3HC zinc finger-like [PF07967.15, score=74.5]; Rsm1-like [PF08600.12, score=43.1]} {Human: ENSG00000091732, ZC3HC1, zinc finger C3HC-type containing 1, [RH, Score=86.3, Expect=8e-18]} {Mouse: ENSMUSG00000039130, Zc3hc1, zinc finger, C3HC type 1, [RH, Score=90.5, Expect=2e-19]} {RNA1509_48673} {RNA1310_19146, RNA1509_48673} {RNA1509_48673, RNA815_7920}
7.	MligTC455_33185	30	0.63	Mlig455_051887	Neo: - Age: Down-Up-Down		0.952	-	-	-	-	-	0.952	Mlig455_051887 {REF} {Length: 1288} {RNA1509_39807} {RNA1310_34787.2} {RNA815_21936}
8.	MligTC455_13714	219	4.55	Mlig455_039476	Neo: - Age: - Region-enriched R4: 5.355/0.00070 Region-enriched R5: 3.269/0.00973		0.951	-	-	-	-	-	0.951	Mlig455_039476 {REF} {Length: 684} {NoTransDecoderORF} {RNA1509_296, RNA1509_36260, RNA1509_3658} {RNA1310_1675.1, RNA1509_296, RNA1509_3658} {RNA1509_296, RNA1509_3658, RNA815_2514.1}

Berezikov Lab - 2020-2021 © ERIBA