TomoSeq data search

Data search

Results for MligTC455_39625

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_39625	625	13.03	Mlig455_006331	Neo: - Age: Down-Up-Down	TRIM65	Mlig455_006331 {REF} {Length: 2946} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=40.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=39.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=36.7]; RING-type zinc-finger [PF13445.8, score=35.7]; Ring finger domain [PF13639.8, score=35.7]; Prokaryotic RING finger family 4 [PF14447.8, score=26.2]; zinc-RING finger domain [PF14634.8, score=25.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=24.9]; U-box domain [PF04564.17, score=21.0]; zinc RING finger of MSL2 [PF16685.7, score=20.5]; RING-H2 zinc finger domain [PF12678.9, score=19.7]} {Human: ENSG00000141569, TRIM65, tripartite motif containing 65, [Score=66.6, Expect=6e-11]; ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=65.5, Expect=2e-10]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=65.1, Expect=1e-11]} {Mouse: ENSMUSG00000035235, Trim13, tripartite motif-containing 13, [RH, Score=60.8, Expect=2e-09]; ENSMUSG00000057143, Trim12c, tripartite motif-containing 12C, [RH, Score=60.5, Expect=4e-09]; ENSMUSG00000060441, Trim5, tripartite motif-containing 5, [RH, Score=60.5, Expect=3e-09]; ENSMUSG00000054517, Trim65, tripartite motif-containing 65, [RH, Score=59.7, Expect=7e-09]; ENSMUSG00000000275, Trim25, tripartite motif-containing 25, [RH, Score=59.3, Expect=1e-08]} {Dmel: FBgn0265356, tn, thin, [Score=54.7, Expect=2e-07]} {Smed: dd_Smed_v6_14782_0_3, dd_Smed_v6_14782_0_3, [Score=51.6, Expect=5e-07]} {RNA1509_47893} {RNA1310_12453.1} {RNA815_4491}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39625

625

13.03

Mlig455_006331

Neo: -

Age: Down-Up-Down

TRIM65

Mlig455_006331 {REF} {Length: 2946} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=40.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=39.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=36.7]; RING-type zinc-finger [PF13445.8, score=35.7]; Ring finger domain [PF13639.8, score=35.7]; Prokaryotic RING finger family 4 [PF14447.8, score=26.2]; zinc-RING finger domain [PF14634.8, score=25.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=24.9]; U-box domain [PF04564.17, score=21.0]; zinc RING finger of MSL2 [PF16685.7, score=20.5]; RING-H2 zinc finger domain [PF12678.9, score=19.7]} {Human: ENSG00000141569, TRIM65, tripartite motif containing 65, [Score=66.6, Expect=6e-11]; ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=65.5, Expect=2e-10]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=65.1, Expect=1e-11]} {Mouse: ENSMUSG00000035235, Trim13, tripartite motif-containing 13, [RH, Score=60.8, Expect=2e-09]; ENSMUSG00000057143, Trim12c, tripartite motif-containing 12C, [RH, Score=60.5, Expect=4e-09]; ENSMUSG00000060441, Trim5, tripartite motif-containing 5, [RH, Score=60.5, Expect=3e-09]; ENSMUSG00000054517, Trim65, tripartite motif-containing 65, [RH, Score=59.7, Expect=7e-09]; ENSMUSG00000000275, Trim25, tripartite motif-containing 25, [RH, Score=59.3, Expect=1e-08]} {Dmel: FBgn0265356, tn, thin, [Score=54.7, Expect=2e-07]} {Smed: dd_Smed_v6_14782_0_3, dd_Smed_v6_14782_0_3, [Score=51.6, Expect=5e-07]} {RNA1509_47893} {RNA1310_12453.1} {RNA815_4491}

Cumulative graph for MligTC455_39625

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.813	4.006	0.45228	1.00000
RegionR2	0.389	4.006	0.36134	0.75624
RegionR3	0.516	4.006	0.12476	0.60872
RegionR4	0.124	4.006	0.75830	1.00000
RegionR5	-0.055	4.006	0.86782	1.00000
RegionR6	0.569	4.006	0.10487	0.59397
RegionR7	-0.411	4.006	0.41923	1.00000
RegionR8	-0.319	4.006	0.59270	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.863	4.006	0.65791	1.00000
RegenerationR2	0.115	4.006	0.73737	0.96879
RegenerationR3	0.064	4.006	0.86150	1.00000
RegenerationR4	0.289	4.006	0.46318	0.84904
RegenerationR5	0.451	4.006	0.21418	0.64928
RegenerationR6	-0.43	4.006	0.28987	0.64011
RegenerationBL	-1.438	4.006	0.03762	0.21969
RegenerationTP	1.353	4.006	0.00627	0.13305

Genes with expression patterns similar to MligTC455_39625

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39625	625	13.03	Mlig455_006331	Neo: - Age: Down-Up-Down	TRIM65	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_006331 {REF} {Length: 2946} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=40.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=39.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=36.7]; RING-type zinc-finger [PF13445.8, score=35.7]; Ring finger domain [PF13639.8, score=35.7]; Prokaryotic RING finger family 4 [PF14447.8, score=26.2]; zinc-RING finger domain [PF14634.8, score=25.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=24.9]; U-box domain [PF04564.17, score=21.0]; zinc RING finger of MSL2 [PF16685.7, score=20.5]; RING-H2 zinc finger domain [PF12678.9, score=19.7]} {Human: ENSG00000141569, TRIM65, tripartite motif containing 65, [Score=66.6, Expect=6e-11]; ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=65.5, Expect=2e-10]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=65.1, Expect=1e-11]} {Mouse: ENSMUSG00000035235, Trim13, tripartite motif-containing 13, [RH, Score=60.8, Expect=2e-09]; ENSMUSG00000057143, Trim12c, tripartite motif-containing 12C, [RH, Score=60.5, Expect=4e-09]; ENSMUSG00000060441, Trim5, tripartite motif-containing 5, [RH, Score=60.5, Expect=3e-09]; ENSMUSG00000054517, Trim65, tripartite motif-containing 65, [RH, Score=59.7, Expect=7e-09]; ENSMUSG00000000275, Trim25, tripartite motif-containing 25, [RH, Score=59.3, Expect=1e-08]} {Dmel: FBgn0265356, tn, thin, [Score=54.7, Expect=2e-07]} {Smed: dd_Smed_v6_14782_0_3, dd_Smed_v6_14782_0_3, [Score=51.6, Expect=5e-07]} {RNA1509_47893} {RNA1310_12453.1} {RNA815_4491}
2.	MligTC455_31496	184	3.84	Mlig455_035567	Neo: - Age: Up-Down-Down	SLC37A3	1.742	-	-	-	0.785	-	0.957	Mlig455_035567 {REF} {Length: 4072} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=146.3]; Sugar (and other) transporter [PF00083.26, score=25.3]} {Human: ENSG00000157800, SLC37A3, solute carrier family 37 member 3, [RH, Score=411, Expect=2e-139]} {Mouse: ENSMUSG00000029924, Slc37a3, solute carrier family 37 (glycerol-3-phosphate transporter), member 3, [RH, Score=424, Expect=2e-144]} {Dmel: FBgn0034611, MFS16, Major Facilitator Superfamily Transporter 16, [Score=246, Expect=3e-75]} {Celegans: WBGene00011717, T11G6.2, [RH, Score=417, Expect=1e-141]} {Smed: dd_Smed_v6_1904_0_1, dd_Smed_v6_1904_0_1, [RH, Score=375, Expect=7e-126]} {RNA1509_13102} {RNA1310_18914} {RNA815_7298}
3.	MligTC455_22137	2395	49.89	Mlig455_024340	Neo: - Age: -		0.973	-	-	-	-	-	0.973	Mlig455_024340 {REF} {Length: 1781} {RNA1509_10674, RNA1509_58325} {RNA1310_29555.1, RNA1509_58325} {RNA1509_58325, RNA815_13134}
4.	MligTC455_36244	3904	81.32	Mlig455_062578	Neo: - Age: -		0.958	-	-	-	-	-	0.958	Mlig455_062578 {REF} {Length: 1957} {Pfam: Sleepless protein [PF17064.7, score=44.4]; Domain of unknown function (DUF5746) [PF19017.2, score=24.3]} {Dmel: FBgn0032420, CG6583, [RH, Score=71.6, Expect=2e-16]} {Smed: dd_Smed_v6_2196_0_1, dd_Smed_v6_2196_0_1, [RH, Score=146, Expect=4e-46]} {RNA1509_21027, RNA1509_32968, RNA1509_41256, RNA1509_43003, RNA1509_47621, RNA1509_5370} {RNA1310_25300.1, RNA1509_21027, RNA1509_32968, RNA1509_41256, RNA1509_43003, RNA1509_47621, RNA1509_5370} {RNA1509_21027, RNA1509_32968, RNA1509_41256, RNA1509_43003, RNA1509_47621, RNA1509_5370, RNA815_9991.1}