M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39833

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39833 519 10.82 Mlig455_018031

Neo: -

Age: -

 CKMT2 Mlig455_018031 {REF} {Length: 2867} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.21, score=249.7]; ATP:guanido phosphotransferase, N-terminal domain [PF02807.17, score=73.8]} {Human: ENSG00000131730, CKMT2, creatine kinase, mitochondrial 2, [RH, Score=278, Expect=3e-86]; ENSG00000104879, CKM, creatine kinase, M-type, [RH, Score=275, Expect=1e-85]; ENSG00000237289, CKMT1B, creatine kinase, mitochondrial 1B, [RH, Score=266, Expect=7e-82]; ENSG00000223572, CKMT1A, creatine kinase, mitochondrial 1A, [RH, Score=266, Expect=7e-82]} {Mouse: ENSMUSG00000021622, Ckmt2, creatine kinase, mitochondrial 2, [RH, Score=276, Expect=8e-86]; ENSMUSG00000000308, Ckmt1, creatine kinase, mitochondrial 1, ubiquitous, [RH, Score=270, Expect=2e-83]} {Dmel: FBgn0000116, Argk, Arginine kinase, [Score=270, Expect=2e-84]} {Celegans: WBGene00018519, F46H5.3, Probable arginine kinase F46H5.3, [Score=272, Expect=9e-85]} {Smed: dd_Smed_v6_67158_0_1, dd_Smed_v6_67158_0_1, [Score=189, Expect=3e-55]} {RNA1509_18119, RNA1509_26557, RNA1509_51806} {RNA1310_2253.2, RNA1509_18119, RNA1509_51806} {RNA1509_18119, RNA1509_51806, RNA815_891.1}

Cumulative graph for MligTC455_39833

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.726 3.823 0.28449 0.93609
RegionR2 0.732 3.823 0.32908 0.72136
RegionR3 1.013 3.823 0.10511 0.56709
RegionR4 1.117 3.823 0.17641 0.44367
RegionR5 -1.506 3.823 0.05216 0.19347
RegionR6 0.556 3.823 0.40266 0.97375
RegionR7 -0.873 3.823 0.32750 0.96186
RegionR8 0.687 3.823 0.38926 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.832 3.823 0.27188 0.97536
RegenerationR2 -0.105 3.823 0.88546 1.00000
RegenerationR3 -0.156 3.823 0.84536 0.99628
RegenerationR4 0.302 3.823 0.73389 0.96562
RegenerationR5 1.564 3.823 0.07629 0.43161
RegenerationR6 0.427 3.823 0.60733 0.87275
RegenerationBL -0.506 3.823 0.54110 0.89958
RegenerationTP -0.513 3.823 0.57191 0.94579


Genes with expression patterns similar to MligTC455_39833

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39833 519 10.82 Mlig455_018031

Neo: -

Age: -

 CKMT2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_018031 {REF} {Length: 2867} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.21, score=249.7]; ATP:guanido phosphotransferase, N-terminal domain [PF02807.17, score=73.8]} {Human: ENSG00000131730, CKMT2, creatine kinase, mitochondrial 2, [RH, Score=278, Expect=3e-86]; ENSG00000104879, CKM, creatine kinase, M-type, [RH, Score=275, Expect=1e-85]; ENSG00000237289, CKMT1B, creatine kinase, mitochondrial 1B, [RH, Score=266, Expect=7e-82]; ENSG00000223572, CKMT1A, creatine kinase, mitochondrial 1A, [RH, Score=266, Expect=7e-82]} {Mouse: ENSMUSG00000021622, Ckmt2, creatine kinase, mitochondrial 2, [RH, Score=276, Expect=8e-86]; ENSMUSG00000000308, Ckmt1, creatine kinase, mitochondrial 1, ubiquitous, [RH, Score=270, Expect=2e-83]} {Dmel: FBgn0000116, Argk, Arginine kinase, [Score=270, Expect=2e-84]} {Celegans: WBGene00018519, F46H5.3, Probable arginine kinase F46H5.3, [Score=272, Expect=9e-85]} {Smed: dd_Smed_v6_67158_0_1, dd_Smed_v6_67158_0_1, [Score=189, Expect=3e-55]} {RNA1509_18119, RNA1509_26557, RNA1509_51806} {RNA1310_2253.2, RNA1509_18119, RNA1509_51806} {RNA1509_18119, RNA1509_51806, RNA815_891.1}
2. MligTC455_46254 1114 23.21 Mlig455_000448

Neo: -

Age: -

 CASC1 1.795 - - 0.840 0.955 - - Mlig455_000448 {REF} {Length: 3104} {Pfam: Cancer susceptibility candidate 1 N-terminus [PF15927.7, score=168.4]; Cancer susceptibility candidate 1 C-terminal [PF12366.10, score=29.2]} {Human: ENSG00000118307, CASC1, cancer susceptibility 1, [RH, Score=320, Expect=4e-98]} {Mouse: ENSMUSG00000043541, Casc1, cancer susceptibility candidate 1, [RH, Score=295, Expect=2e-88]} {Dmel: FBgn0030889, CG15373, [RH, Score=83.6, Expect=4e-16]} {Smed: dd_Smed_v6_11291_0_1, dd_Smed_v6_11291_0_1, [RH, Score=521, Expect=7e-175]} {RNA1509_1842} {RNA1310_6962.1, RNA1509_1842} {RNA1509_1842, RNA815_2139}
3. MligTC455_38106 572 11.92 Mlig455_059707

Neo: -

Age: logFC(26M/2M)=-0.405

 AK9 0.959 - - - 0.959 - - Mlig455_059707 {REF} {Length: 6057} {Pfam: Adenylate kinase [PF00406.24, score=145.8]; AAA domain [PF13207.8, score=69.8]; Domain of unknown function [PF12018.10, score=54.9]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=38.2]; AAA domain [PF13238.8, score=37.3]; YHS domain [PF04945.15, score=34.6]; AAA domain [PF13671.8, score=31.5]; AAA domain [PF13479.8, score=31.0]; AAA domain [PF13401.8, score=23.8]; Hydin Adenylate kinase-like domain [PF17213.5, score=21.7]; RNA helicase [PF00910.24, score=19.7]; AAA domain [PF13521.8, score=19.5]} {Human: ENSG00000155085, AK9, adenylate kinase 9, [RH, Score=1088, Expect=0.0]} {Mouse: ENSMUSG00000091415, Ak9, adenylate kinase 9, [RH, Score=1087, Expect=0.0]} {Dmel: FBgn0283494, Adk2, Adenylate kinase 2, [Score=52.8, Expect=8e-07]} {Celegans: WBGene00009575, F40F8.1, UMP-CMP kinase 2, [Score=57.8, Expect=6e-09]} {Smed: dd_Smed_v6_9617_0_1, dd_Smed_v6_9617_0_1, [RH, Score=863, Expect=0.0]} {RNA1509_1039} {RNA1310_346} {RNA815_505}
4. MligTC455_26674 269 5.61 Mlig455_032971

Neo: -

Age: -

 0.955 0.955 - - - - - Mlig455_032971 {REF} {Length: 1976} {TRANSSPLICED} {RNA1509_55515} {RNA1310_23195.1} {RNA815_9573}
5. MligTC455_26935 289 6.01 Mlig455_037791

Neo: -

Age: -

 0.954 0.954 - - - - - Mlig455_037791 {REF} {Length: 3234} {Pfam: Innexin [PF00876.20, score=414.3]} {Dmel: FBgn0085387, shakB, shaking B, [Score=127, Expect=2e-31]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=343, Expect=3e-114]} {Smed: dd_Smed_v6_11077_0_2, dd_Smed_v6_11077_0_2, [Score=479, Expect=1e-166]} {RNA1509_20876} {RNA1310_15813} {RNA815_1848.1}
6. MligTC455_37573 1343 27.98 Mlig455_036889

Neo: -

Age: -

 RIBC2 0.954 - - - 0.954 - - Mlig455_036889 {REF} {Length: 2270} {Pfam: RIB43A [PF05914.14, score=479.9]} {Human: ENSG00000128408, RIBC2, RIB43A domain with coiled-coils 2, [RH, Score=294, Expect=8e-97]} {Mouse: ENSMUSG00000022431, Ribc2, RIB43A domain with coiled-coils 2, [RH, Score=252, Expect=1e-80]} {Dmel: FBgn0036214, CG7264, [RH, Score=135, Expect=3e-36]} {Smed: dd_Smed_v6_26360_0_1, dd_Smed_v6_26360_0_1, [RH, Score=440, Expect=1e-154]} {RNA1509_28669, RNA1509_29035, RNA1509_32630} {RNA1310_14063, RNA1509_28669, RNA1509_29035, RNA1509_32630} {RNA1509_28669, RNA1509_29035, RNA1509_32630, RNA815_3363.1}
7. MligTC455_52491 413 8.61 Mlig455_041906

Neo: -

Age: logFC(26M/2M)=-0.855

Region-specific R2: 3.229

Region-enriched R2: 2.944/0.00036

 0.953 - - 0.953 - - - Mlig455_041906 {REF} {Length: 712} {RNA1509_31700} {RNA1310_225.1, RNA1509_31700} {RNA1509_31700, RNA815_107.1}
8. MligTC455_45673 1161 24.19 Mlig455_054507, Mlig455_055365, Mlig455_055424

Neo: -

Age: logFC(26M/2M)=-0.307

 0.951 - - - 0.951 - -

Mlig455_054507 {REF} {Length: 2673} {TRANSSPLICED} {RNA1509_38666, RNA1509_46171} {RNA1310_10426, RNA1509_38666, RNA1509_46171} {RNA1509_38666, RNA1509_46171, RNA815_26069}

Mlig455_055365 {REF} {Length: 4933} {TRANSSPLICED} {RNA1509_38666} {RNA1310_10426} {RNA815_26069}

Mlig455_055424 {REF} {Length: 569} {NoTransDecoderORF} {RNA1509_38666} {RNA1310_11808} {RNA815_26069}
9. MligTC455_45180 3771 78.56 Mlig455_048575, Mlig455_049036

Neo: -

Age: -

 CFAP20 0.95 - - - 0.950 - -

Mlig455_048575 {REF} {Length: 2450} {Pfam: Protein of unknown function (DUF667) [PF05018.15, score=310.7]} {Human: ENSG00000070761, CFAP20, cilia and flagella associated protein 20, [RH, Score=367, Expect=4e-131]} {Mouse: ENSMUSG00000031796, Cfap20, cilia and flagella associated protein 20, [RH, Score=370, Expect=2e-132]} {Dmel: FBgn0032248, Bug22, Basal body up regulated gene 22, [RH, Score=368, Expect=9e-132]} {Celegans: WBGene00008288, C54C6.6, Cilia- and flagella-associated protein 20, [RH, Score=345, Expect=1e-122]} {Smed: dd_Smed_v6_4843_0_1, dd_Smed_v6_4843_0_1, [RH, Score=362, Expect=2e-129]} {RNA1509_1898, RNA1509_20182, RNA1509_31290, RNA1509_42166} {RNA1310_20376.1, RNA1509_20182, RNA1509_31290, RNA1509_42166} {RNA1509_20182, RNA1509_31290, RNA1509_42166, RNA815_8129.1}

Mlig455_049036 {REF} {Length: 1640} {Pfam: Protein of unknown function (DUF667) [PF05018.15, score=310.7]} {Human: ENSG00000070761, CFAP20, cilia and flagella associated protein 20, [RH, Score=367, Expect=4e-131]} {Mouse: ENSMUSG00000031796, Cfap20, cilia and flagella associated protein 20, [RH, Score=370, Expect=2e-132]} {Dmel: FBgn0032248, Bug22, Basal body up regulated gene 22, [RH, Score=368, Expect=9e-132]} {Celegans: WBGene00008288, C54C6.6, Cilia- and flagella-associated protein 20, [RH, Score=345, Expect=1e-122]} {Smed: dd_Smed_v6_4843_0_1, dd_Smed_v6_4843_0_1, [RH, Score=362, Expect=2e-129]} {RNA1509_1898} {RNA1310_20376.1, RNA1509_1898} {RNA1509_1898, RNA815_8129.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA