TomoSeq data search

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Results for MligTC455_40016

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_40016

3455

71.98

Mlig455_066108, Mlig455_068664

Neo: -

Age: logFC(26M/2M)=0.286

RAB2A

Mlig455_066108 {REF} {Length: 2568} {Pfam: Ras family [PF00071.24, score=209.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=47.7]; 50S ribosome-binding GTPase [PF01926.25, score=22.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.1]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000104388, RAB2A, RAB2A, member RAS oncogene family, [RH, Score=382, Expect=1e-136]; ENSG00000129472, RAB2B, RAB2B, member RAS oncogene family, [RH, Score=379, Expect=4e-135]} {Mouse: ENSMUSG00000047187, Rab2a, RAB2A, member RAS oncogene family, [RH, Score=384, Expect=2e-137]; ENSMUSG00000022159, Rab2b, RAB2B, member RAS oncogene family, [RH, Score=374, Expect=3e-133]} {Dmel: FBgn0014009, Rab2, [RH, Score=382, Expect=9e-137]} {Celegans: WBGene00006833, unc-108, Rab-2, [RH, Score=383, Expect=3e-137]} {Smed: dd_Smed_v6_1113_0_1, dd_Smed_v6_1113_0_1, [RH, Score=400, Expect=2e-144]} {RNA1509_20223} {RNA1310_20502, RNA1509_20223} {RNA1509_20223, RNA815_8592.1}

Mlig455_068664 {REF} {Length: 1692} {Pfam: Ras family [PF00071.24, score=209.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=47.7]; 50S ribosome-binding GTPase [PF01926.25, score=22.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.1]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000104388, RAB2A, RAB2A, member RAS oncogene family, [RH, Score=382, Expect=1e-136]; ENSG00000129472, RAB2B, RAB2B, member RAS oncogene family, [RH, Score=379, Expect=4e-135]} {Mouse: ENSMUSG00000047187, Rab2a, RAB2A, member RAS oncogene family, [RH, Score=384, Expect=2e-137]; ENSMUSG00000022159, Rab2b, RAB2B, member RAS oncogene family, [RH, Score=374, Expect=3e-133]} {Dmel: FBgn0014009, Rab2, [RH, Score=382, Expect=9e-137]} {Celegans: WBGene00006833, unc-108, Rab-2, [RH, Score=383, Expect=3e-137]} {Smed: dd_Smed_v6_1113_0_1, dd_Smed_v6_1113_0_1, [RH, Score=400, Expect=2e-144]} {RNA1509_20223, RNA1509_28866, RNA1509_34798} {RNA1310_20502, RNA1509_28866, RNA1509_34798} {RNA1509_28866, RNA1509_34798, RNA815_8592.1}

Cumulative graph for MligTC455_40016

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.929	6.346	0.11449	0.70114
RegionR2	-0.647	6.346	0.02025	0.15449
RegionR3	0.232	6.346	0.29541	0.83721
RegionR4	0.875	6.346	0.00077	0.00852
RegionR5	0.883	6.346	0.00002	0.00035
RegionR6	0.445	6.346	0.04651	0.40341
RegionR7	0.054	6.346	0.84070	1.00000
RegionR8	-0.913	6.346	0.01563	0.24355

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.167	6.346	0.83073	1.00000
RegenerationR2	0.342	6.346	0.17096	0.60999
RegenerationR3	0.072	6.346	0.78131	0.97607
RegenerationR4	-0.073	6.346	0.78450	0.98235
RegenerationR5	-0.363	6.346	0.14080	0.55371
RegenerationR6	-0.206	6.346	0.43093	0.75836
RegenerationBL	0.233	6.346	0.40366	0.77271
RegenerationTP	0.745	6.346	0.01652	0.22113

Genes with expression patterns similar to MligTC455_40016

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_40016	3455	71.98	Mlig455_066108, Mlig455_068664	Neo: - Age: logFC(26M/2M)=0.286	RAB2A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_066108 {REF} {Length: 2568} {Pfam: Ras family [PF00071.24, score=209.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=47.7]; 50S ribosome-binding GTPase [PF01926.25, score=22.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.1]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000104388, RAB2A, RAB2A, member RAS oncogene family, [RH, Score=382, Expect=1e-136]; ENSG00000129472, RAB2B, RAB2B, member RAS oncogene family, [RH, Score=379, Expect=4e-135]} {Mouse: ENSMUSG00000047187, Rab2a, RAB2A, member RAS oncogene family, [RH, Score=384, Expect=2e-137]; ENSMUSG00000022159, Rab2b, RAB2B, member RAS oncogene family, [RH, Score=374, Expect=3e-133]} {Dmel: FBgn0014009, Rab2, [RH, Score=382, Expect=9e-137]} {Celegans: WBGene00006833, unc-108, Rab-2, [RH, Score=383, Expect=3e-137]} {Smed: dd_Smed_v6_1113_0_1, dd_Smed_v6_1113_0_1, [RH, Score=400, Expect=2e-144]} {RNA1509_20223} {RNA1310_20502, RNA1509_20223} {RNA1509_20223, RNA815_8592.1} Mlig455_068664 {REF} {Length: 1692} {Pfam: Ras family [PF00071.24, score=209.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=47.7]; 50S ribosome-binding GTPase [PF01926.25, score=22.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.1]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000104388, RAB2A, RAB2A, member RAS oncogene family, [RH, Score=382, Expect=1e-136]; ENSG00000129472, RAB2B, RAB2B, member RAS oncogene family, [RH, Score=379, Expect=4e-135]} {Mouse: ENSMUSG00000047187, Rab2a, RAB2A, member RAS oncogene family, [RH, Score=384, Expect=2e-137]; ENSMUSG00000022159, Rab2b, RAB2B, member RAS oncogene family, [RH, Score=374, Expect=3e-133]} {Dmel: FBgn0014009, Rab2, [RH, Score=382, Expect=9e-137]} {Celegans: WBGene00006833, unc-108, Rab-2, [RH, Score=383, Expect=3e-137]} {Smed: dd_Smed_v6_1113_0_1, dd_Smed_v6_1113_0_1, [RH, Score=400, Expect=2e-144]} {RNA1509_20223, RNA1509_28866, RNA1509_34798} {RNA1310_20502, RNA1509_28866, RNA1509_34798} {RNA1509_28866, RNA1509_34798, RNA815_8592.1}
2.	MligTC455_40015	2233	46.52	Mlig455_024775	Neo: - Age: Up-Down-Up, logFC(26M/2M)=-1.108	RAB2A	2.625	-	-	-	0.924	0.736	0.965	Mlig455_024775 {REF} {Length: 1386} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=209.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=47.7]; 50S ribosome-binding GTPase [PF01926.25, score=22.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.1]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000104388, RAB2A, RAB2A, member RAS oncogene family, [RH, Score=382, Expect=1e-136]; ENSG00000129472, RAB2B, RAB2B, member RAS oncogene family, [RH, Score=379, Expect=4e-135]} {Mouse: ENSMUSG00000047187, Rab2a, RAB2A, member RAS oncogene family, [RH, Score=384, Expect=2e-137]; ENSMUSG00000022159, Rab2b, RAB2B, member RAS oncogene family, [RH, Score=374, Expect=3e-133]} {Dmel: FBgn0014009, Rab2, [RH, Score=382, Expect=9e-137]} {Celegans: WBGene00006833, unc-108, Rab-2, [RH, Score=383, Expect=3e-137]} {Smed: dd_Smed_v6_1113_0_1, dd_Smed_v6_1113_0_1, [RH, Score=400, Expect=2e-144]} {RNA1509_17955, RNA1509_20223, RNA1509_45771} {RNA1310_20502, RNA1509_17955, RNA1509_45771} {RNA1509_17955, RNA1509_45771, RNA815_8592.1}
3.	MligTC455_37152	32	0.66	Mlig455_060572	Neo: - Age: -	CLCA1	0.983	-	-	-	-	0.983	-	Mlig455_060572 {REF} {Length: 6370} {Pfam: Calcium-activated chloride channel N terminal [PF08434.13, score=90.7]; von Willebrand factor type A domain [PF00092.30, score=61.8]; von Willebrand factor type A domain [PF13519.8, score=53.2]; von Willebrand factor type A domain [PF13768.8, score=49.1]} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=224, Expect=2e-60]} {Mouse: ENSMUSG00000028255, Clca1, chloride channel accessory 1, [Score=212, Expect=2e-56]} {Smed: dd_Smed_v6_696_0_1, dd_Smed_v6_696_0_1, [RH, Score=135, Expect=1e-32]} {RNA1509_55009} {RNA1310_8014.1, RNA1509_55009} {RNA1509_55009, RNA815_22781}
4.	MligTC455_17457	18	0.38	Mlig455_059472	Neo: - Age: -		0.967	-	-	-	-	0.967	-	Mlig455_059472 {REF} {Length: 1615} {RNA1310_20618.1} {RNA815_27533}
5.	MligTC455_40200	1027	21.4	Mlig455_009546, Mlig455_061942	Neo: - Age: -	ANK2, ANK3	0.962	-	-	-	-	-	0.962	Mlig455_009546 {REF} {Length: 2330} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=130.8]; Ankyrin repeat [PF13606.8, score=91.0]; Ankyrin repeats (many copies) [PF13857.8, score=89.1]; Ankyrin repeats (many copies) [PF13637.8, score=77.4]; Ankyrin repeat [PF00023.32, score=72.3]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=95.9, Expect=2e-19]; ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=94.0, Expect=4e-19]; ENSG00000145362, ANK2, ankyrin 2, [Score=91.3, Expect=4e-18]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=95.5, Expect=1e-19]; ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=92.4, Expect=9e-19]} {Dmel: FBgn0261554, CG42672, [Score=90.5, Expect=2e-18]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=89.7, Expect=3e-18]} {Smed: dd_Smed_v6_16235_0_1, dd_Smed_v6_16235_0_1, [RH, Score=130, Expect=2e-31]} {RNA1509_15676, RNA1509_30352, RNA1509_45516} {RNA1310_10189, RNA1509_15676, RNA1509_30352, RNA1509_45516} {RNA1509_15676, RNA1509_30352, RNA1509_45516, RNA815_5312} Mlig455_061942 {REF} {Length: 2183} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=92.4]; Ankyrin repeat [PF13606.8, score=75.8]; Ankyrin repeats (many copies) [PF13857.8, score=62.8]; Ankyrin repeat [PF00023.32, score=55.7]; Ankyrin repeats (many copies) [PF13637.8, score=49.3]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=69.7, Expect=1e-11]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=67.8, Expect=2e-11]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=65.9, Expect=1e-10]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=65.9, Expect=2e-10]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=68.9, Expect=1e-11]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=59.3, Expect=8e-09]} {Smed: dd_Smed_v6_16235_0_1, dd_Smed_v6_16235_0_1, [Score=80.5, Expect=1e-15]} {RNA1509_45516} {RNA1310_10189} {RNA815_5312}
6.	MligTC455_18688	1289	26.85	Mlig455_011119	Neo: - Age: -	SMAP2	0.961	-	-	-	-	-	0.961	Mlig455_011119 {REF} {Length: 2546} {TRANSSPLICED} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=134.1]} {Human: ENSG00000084070, SMAP2, small ArfGAP2, [RH, Score=182, Expect=6e-51]; ENSG00000112305, SMAP1, small ArfGAP 1, [RH, Score=179, Expect=6e-50]} {Mouse: ENSMUSG00000032870, Smap2, small ArfGAP 2, [RH, Score=181, Expect=5e-51]; ENSMUSG00000026155, Smap1, small ArfGAP 1, [RH, Score=178, Expect=1e-49]} {Dmel: FBgn0039056, CenB1A, Centaurin beta 1A, [Score=109, Expect=1e-24]} {Celegans: WBGene00012359, W09D10.1, [RH, Score=196, Expect=4e-56]} {Smed: dd_Smed_v6_2542_0_1, dd_Smed_v6_2542_0_1, [Score=193, Expect=6e-56]} {RNA1509_9997} {RNA1310_11607.1} {RNA815_21428}
7.	MligTC455_20814	15	0.32	Mlig455_012566	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_012566 {REF} {Length: 4049} {RNA1509_59232} {RNA1310_7612} {RNA815_481.1}
8.	MligTC455_41884	56	1.16	Mlig455_066543	Neo: - Age: -	ANKRD50	0.957	-	-	-	-	0.957	-	Mlig455_066543 {REF} {Length: 3297} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=75.2]; Ankyrin repeats (many copies) [PF13637.8, score=64.2]; Ankyrin repeats (many copies) [PF13857.8, score=53.3]; Ankyrin repeat [PF13606.8, score=48.7]; Mab-21 protein [PF03281.16, score=42.2]; Ankyrin repeat [PF00023.32, score=37.8]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=85.1, Expect=4e-16]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=86.7, Expect=9e-17]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=86.7, Expect=7e-17]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=63.5, Expect=7e-10]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=87.0, Expect=3e-17]} {RNA1509_27730} {RNA1310_22442} {RNA815_2426.1}
9.	MligTC455_45732	879	18.3	Mlig455_056580	Neo: - Age: - Region-enriched R4: 1.446/0.00739	GALNT1	0.957	-	-	-	-	-	0.957	Mlig455_056580 {REF} {Length: 3816} {TRANSSPLICED} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=114.4]; Ricin-type beta-trefoil lectin domain [PF00652.24, score=97.9]; Glycosyltransferase like family 2 [PF13641.8, score=27.0]; N-terminal domain of galactosyltransferase [PF02709.16, score=22.1]} {Human: ENSG00000141429, GALNT1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=466, Expect=7e-158]; ENSG00000144278, GALNT13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=458, Expect=1e-154]} {Mouse: ENSMUSG00000000420, Galnt1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=466, Expect=4e-158]; ENSMUSG00000060988, Galnt13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=459, Expect=2e-155]} {Dmel: FBgn0050463, CG30463, [RH, Score=590, Expect=0.0]} {Celegans: WBGene00001630, gly-5, Polypeptide N-acetylgalactosaminyltransferase 5, [RH, Score=632, Expect=0.0]} {Smed: dd_Smed_v6_4615_0_1, dd_Smed_v6_4615_0_1, [RH, Score=642, Expect=0.0]} {RNA1509_8236} {RNA1310_12402} {RNA815_4139.1}
10.	MligTC455_48880	45	0.93	Mlig455_000111	Neo: - Age: Up-Down-Down	YPEL2	0.953	-	-	-	-	0.953	-	Mlig455_000111 {REF} {Length: 2401} {Pfam: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly [PF03226.16, score=52.9]} {Human: ENSG00000175155, YPEL2, yippee like 2, [RH, Score=189, Expect=1e-61]; ENSG00000100027, YPEL1, yippee like 1, [RH, Score=189, Expect=1e-61]; ENSG00000090238, YPEL3, yippee like 3, [RH, Score=186, Expect=1e-59]; ENSG00000166793, YPEL4, yippee like 4, [RH, Score=181, Expect=4e-58]} {Mouse: ENSMUSG00000018427, Ypel2, yippee like 2, [RH, Score=189, Expect=7e-62]; ENSMUSG00000022773, Ypel1, yippee like 1, [RH, Score=187, Expect=3e-61]; ENSMUSG00000042675, Ypel3, yippee like 3, [RH, Score=183, Expect=2e-59]; ENSMUSG00000034059, Ypel4, yippee like 4, [RH, Score=182, Expect=9e-59]} {Dmel: FBgn0030183, CG15309, [RH, Score=179, Expect=4e-58]} {Celegans: WBGene00009503, F37A8.5, Protein yippee-like F37A8.5, [RH, Score=189, Expect=1e-61]} {Smed: dd_Smed_v6_5855_0_1, dd_Smed_v6_5855_0_1, [RH, Score=186, Expect=5e-60]} {RNA1509_48461} {RNA1310_13085.1} {RNA815_24399.1}
11.	MligTC455_43148	2114	44.05	Mlig455_001793	Neo: Int S/G2/M Age: -	ZC3H15	0.95	-	-	-	-	-	0.950	Mlig455_001793 {REF} {Length: 2395} {Pfam: DRG Family Regulatory Proteins, Tma46 [PF16543.7, score=79.0]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=34.0]; Zinc finger domain [PF18345.3, score=32.6]; Torus domain [PF16131.7, score=31.3]; CCCH-type zinc finger [PF18044.3, score=31.3]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=26.8]; Zinc-finger containing family [PF15663.7, score=22.5]} {Human: ENSG00000065548, ZC3H15, zinc finger CCCH-type containing 15, [RH, Score=319, Expect=2e-105]} {Mouse: ENSMUSG00000027091, Zc3h15, zinc finger CCCH-type containing 15, [RH, Score=321, Expect=3e-106]} {Dmel: FBgn0033317, CG8635, [RH, Score=289, Expect=3e-94]} {Celegans: WBGene00009189, F27D4.4, Zinc finger CCCH domain-containing protein 15 homolog, [RH, Score=273, Expect=2e-88]} {Smed: dd_Smed_v6_4613_0_1, dd_Smed_v6_4613_0_1, [RH, Score=381, Expect=8e-131]} {RNA1509_15337, RNA1509_18411, RNA1509_22176, RNA1509_3141, RNA1509_54393} {RNA1310_9868.2, RNA1509_15337, RNA1509_18411, RNA1509_22176, RNA1509_3141, RNA1509_54393} {RNA1509_15337, RNA1509_18411, RNA1509_22176, RNA1509_3141, RNA1509_54393, RNA815_3342.1}

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