M. lignano Tomo-Seq
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Results for MligTC455_40519

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40519 1091 22.74 Mlig455_051816

Neo: -

Age: Up-Down-Up

 Mlig455_051816 {REF} {Length: 1540} {RNA1509_11880} {RNA1310_18623} {RNA815_8546}

Cumulative graph for MligTC455_40519

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.797 4.713 0.07742 0.61230
RegionR2 -0.483 4.713 0.21030 0.57425
RegionR3 -0.062 4.713 0.85029 1.00000
RegionR4 0.089 4.713 0.80628 1.00000
RegionR5 0.542 4.713 0.05702 0.20568
RegionR6 0.607 4.713 0.04547 0.39832
RegionR7 0.299 4.713 0.45160 1.00000
RegionR8 0.805 4.713 0.07957 0.53693

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.799 4.713 0.66581 1.00000
RegenerationR2 -0.115 4.713 0.71045 0.96014
RegenerationR3 -0.224 4.713 0.50038 0.85734
RegenerationR4 0.138 4.713 0.67679 0.94447
RegenerationR5 -0.095 4.713 0.74668 0.97084
RegenerationR6 -0.423 4.713 0.19400 0.53321
RegenerationBL -1.23 4.713 0.00267 0.04358
RegenerationTP 0.632 4.713 0.08153 0.45338


Genes with expression patterns similar to MligTC455_40519

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40519 1091 22.74 Mlig455_051816

Neo: -

Age: Up-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_051816 {REF} {Length: 1540} {RNA1509_11880} {RNA1310_18623} {RNA815_8546}
2. MligTC455_40521 1247 25.99 Mlig455_065060

Neo: -

Age: -

 2.704 0.845 0.908 - - - 0.951 Mlig455_065060 {REF} {Length: 1727} {RNA1509_15289} {RNA1310_18623, RNA1509_15289} {RNA1509_15289, RNA815_8546}
3. MligTC455_22202 8064 168 Mlig455_002382, Mlig455_044552

Neo: -

Age: -

Regeneration-downregulated BL: -1.514

Regeneration-depleted BL: -1.514

 TAGLN3 2.543 - - 0.764 0.958 - 0.821

Mlig455_002382 {REF} {Length: 3420} {Pfam: Calponin homology (CH) domain [PF00307.33, score=67.9]; Calponin family repeat [PF00402.20, score=49.9]} {Human: ENSG00000144834, TAGLN3, transgelin 3, [RH, Score=148, Expect=1e-44]} {Mouse: ENSMUSG00000022658, Tagln3, transgelin 3, [RH, Score=147, Expect=7e-45]} {Dmel: FBgn0002789, Mp20, Muscle protein 20, [Score=185, Expect=6e-60]} {Celegans: WBGene00000777, cpn-1, CPN-1; CalPoNin, [Score=129, Expect=1e-37]} {Smed: dd_Smed_v6_1512_0_1, dd_Smed_v6_1512_0_1, [Score=256, Expect=6e-88]} {RNA1509_24477, RNA1509_26578, RNA1509_36683, RNA1509_51022, RNA1509_7417} {RNA1310_27238, RNA1509_24477, RNA1509_26578, RNA1509_36683, RNA1509_51022} {RNA1509_24477, RNA1509_26578, RNA1509_36683, RNA1509_51022, RNA815_11370}

Mlig455_044552 {REF} {Length: 3421} {Pfam: Calponin homology (CH) domain [PF00307.33, score=67.9]; Calponin family repeat [PF00402.20, score=49.9]} {Human: ENSG00000144834, TAGLN3, transgelin 3, [RH, Score=148, Expect=1e-44]} {Mouse: ENSMUSG00000022658, Tagln3, transgelin 3, [RH, Score=147, Expect=7e-45]} {Dmel: FBgn0002789, Mp20, Muscle protein 20, [Score=185, Expect=6e-60]} {Celegans: WBGene00000777, cpn-1, CPN-1; CalPoNin, [Score=129, Expect=1e-37]} {Smed: dd_Smed_v6_1512_0_1, dd_Smed_v6_1512_0_1, [Score=256, Expect=6e-88]} {RNA1509_7417} {RNA1310_27238, RNA1509_7417} {RNA1509_7417, RNA815_11370}
4. MligTC455_24803 386 8.03 Mlig455_016839

Neo: -

Age: -

Region-enriched R6: 1.959/0.04198

 1.795 - - - 0.957 0.838 - Mlig455_016839 {REF} {Length: 1706} {Pfam: Thymosin beta-4 family [PF01290.22, score=72.0]} {Dmel: FBgn0026084, cib, ciboulot, [Score=49.3, Expect=5e-08]} {Celegans: WBGene00006649, tth-1, Thymosin beta, [Score=46.6, Expect=5e-07]} {Smed: dd_Smed_v6_12_0_1, dd_Smed_v6_12_0_1, [RH, Score=72.0, Expect=1e-17]} {RNA1509_16433} {RNA1310_47406.2} {RNA815_27242}
5. MligTC455_35702 478 9.95 Mlig455_026056

Neo: -

Age: -

 ECHDC3 1.78 - - 0.822 0.958 - - Mlig455_026056 {REF} {Length: 2669} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=176.1]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=107.6]} {Human: ENSG00000134463, ECHDC3, enoyl-CoA hydratase domain containing 3, [RH, Score=262, Expect=7e-86]} {Mouse: ENSMUSG00000039063, Echdc3, enoyl Coenzyme A hydratase domain containing 3, [RH, Score=253, Expect=2e-82]} {Dmel: FBgn0034191, CG6984, [RH, Score=209, Expect=1e-65]} {Celegans: WBGene00001151, ech-2, Enoyl-CoA Hydratase, [RH, Score=204, Expect=5e-64]} {Smed: dd_Smed_v6_4330_0_1, dd_Smed_v6_4330_0_1, [RH, Score=236, Expect=9e-77]} {RNA1509_28384} {RNA1310_28620} {RNA815_15187}
6. MligTC455_35703 452 9.42 Mlig455_037300

Neo: -

Age: -

 1.778 - - 0.825 0.953 - - Mlig455_037300 {REF} {Length: 2001} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_28384} {RNA1310_28620} {RNA815_15291.1}
7. MligTC455_45933 530 11.03 Mlig455_043374, Mlig455_066313

Neo: -

Age: -

 1.748 0.960 - - - - 0.788

Mlig455_043374 {REF} {Length: 3139} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=35.3]} {RNA1509_25462} {RNA1310_17115.1} {RNA815_3016}

Mlig455_066313 {REF} {Length: 3033} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=35.8]} {RNA1509_25462} {RNA1310_17115.1, RNA1509_25462} {RNA1509_25462, RNA815_3016}
8. MligTC455_16019 115 2.4 Mlig455_052330

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_052330 {REF} {Length: 1758} {RNA1509_43934} {RNA1310_14928} {RNA815_9981}
9. MligTC455_35717 336 6.99 Mlig455_018431

Neo: -

Age: -

 SNAP25 0.958 - - - 0.958 - - Mlig455_018431 {REF} {Length: 2452} {TRANSSPLICED} {Pfam: SNAP-25 family [PF00835.21, score=46.7]; Domain of unknown function (DUF5089) [PF17002.7, score=22.7]} {Human: ENSG00000132639, SNAP25, synaptosome associated protein 25, [RH, Score=238, Expect=7e-80]} {Mouse: ENSMUSG00000027273, Snap25, synaptosomal-associated protein 25, [RH, Score=238, Expect=5e-80]} {Dmel: FBgn0011288, Snap25, Synaptosomal-associated protein 25kDa, [RH, Score=254, Expect=2e-86]} {Celegans: WBGene00004364, ric-4, Synaptosomal-associated protein, [RH, Score=252, Expect=1e-85]} {Smed: dd_Smed_v6_3977_0_1, dd_Smed_v6_3977_0_1, [RH, Score=285, Expect=1e-98]} {RNA1509_17619, RNA1509_18053} {RNA1310_15614, RNA1509_17619, RNA1509_18053} {RNA1509_17619, RNA1509_18053, RNA815_11344.2}

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