M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40699

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40699 181 3.77 Mlig455_045306

Neo: -

Age: -

 CEP131 Mlig455_045306 {REF} {Length: 4371} {TRANSSPLICED} {Human: ENSG00000141577, CEP131, centrosomal protein 131, [RH, Score=468, Expect=3e-146]} {Mouse: ENSMUSG00000039781, Cep131, centrosomal protein 131, [RH, Score=456, Expect=5e-142]} {Dmel: FBgn0033447, dila, dilatory, [Score=142, Expect=7e-34]} {Smed: dd_Smed_v6_13976_0_1, dd_Smed_v6_13976_0_1, [RH, Score=486, Expect=4e-153]} {RNA1509_51005, RNA1509_7325} {RNA1310_1840, RNA1509_51005} {RNA1509_51005, RNA815_1783}

Cumulative graph for MligTC455_40699

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.528 2.612 0.36162 1.00000
RegionR2 -0.133 2.612 0.89454 1.00000
RegionR3 -0.116 2.612 0.88743 1.00000
RegionR4 2.229 2.612 0.01729 0.09186
RegionR5 0.962 2.612 0.24561 0.55905
RegionR6 0.526 2.612 0.57282 1.00000
RegionR7 1.36 2.612 0.14430 0.70817
RegionR8 -0.301 2.612 0.93054 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.482 2.612 1.00000 1.00000
RegenerationR2 -0.312 2.612 0.54347 0.88990
RegenerationR3 -0.28 2.612 0.65793 0.93244
RegenerationR4 -1.431 2.612 0.03117 0.28488
RegenerationR5 -0.455 2.612 0.41070 0.80608
RegenerationR6 -0.296 2.612 0.63438 0.88988
RegenerationBL -0.297 2.612 0.72730 1.00000
RegenerationTP -1.424 2.612 0.14895 0.57302


Genes with expression patterns similar to MligTC455_40699

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40699 181 3.77 Mlig455_045306

Neo: -

Age: -

 CEP131 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_045306 {REF} {Length: 4371} {TRANSSPLICED} {Human: ENSG00000141577, CEP131, centrosomal protein 131, [RH, Score=468, Expect=3e-146]} {Mouse: ENSMUSG00000039781, Cep131, centrosomal protein 131, [RH, Score=456, Expect=5e-142]} {Dmel: FBgn0033447, dila, dilatory, [Score=142, Expect=7e-34]} {Smed: dd_Smed_v6_13976_0_1, dd_Smed_v6_13976_0_1, [RH, Score=486, Expect=4e-153]} {RNA1509_51005, RNA1509_7325} {RNA1310_1840, RNA1509_51005} {RNA1509_51005, RNA815_1783}
2. MligTC455_29294 761 15.86 Mlig455_018378, Mlig455_018401, Mlig455_069525

Neo: -

Age: -

Region-enriched R4: 1.766/0.03463

 ATXN7L1 1.74 - - 0.950 - - 0.790

Mlig455_018378 {REF} {Length: 4278} {TRANSSPLICED} {Pfam: SCA7, zinc-binding domain [PF08313.14, score=79.8]} {Human: ENSG00000146776, ATXN7L1, ataxin 7 like 1, [RH, Score=71.2, Expect=3e-12]; ENSG00000163635, ATXN7, ataxin 7, [RH, Score=67.8, Expect=4e-11]} {Mouse: ENSMUSG00000020564, Atxn7l1, ataxin 7-like 1, [RH, Score=70.5, Expect=3e-12]; ENSMUSG00000021738, Atxn7, ataxin 7, [RH, Score=67.8, Expect=3e-11]} {Smed: dd_Smed_v6_9582_0_1, dd_Smed_v6_9582_0_1, [Score=50.4, Expect=2e-06]} {RNA1509_29095, RNA1509_37835, RNA1509_42737} {RNA1310_17492, RNA1509_29095, RNA1509_37835, RNA1509_42737} {RNA1509_29095, RNA1509_37835, RNA1509_42737, RNA815_28326}

Mlig455_018401 {REF} {Length: 3404} {TRANSSPLICED} {Pfam: SCA7, zinc-binding domain [PF08313.14, score=80.2]} {Human: ENSG00000146776, ATXN7L1, ataxin 7 like 1, [RH, Score=70.9, Expect=3e-12]} {Mouse: ENSMUSG00000020564, Atxn7l1, ataxin 7-like 1, [RH, Score=70.1, Expect=3e-12]} {Smed: dd_Smed_v6_9582_0_1, dd_Smed_v6_9582_0_1, [Score=50.4, Expect=2e-06]} {RNA1509_29095} {RNA1310_17492} {RNA815_24055}

Mlig455_069525 {REF} {Length: 3679} {TRANSSPLICED} {Pfam: SCA7, zinc-binding domain [PF08313.14, score=79.8]} {Human: ENSG00000146776, ATXN7L1, ataxin 7 like 1, [RH, Score=71.2, Expect=3e-12]; ENSG00000163635, ATXN7, ataxin 7, [RH, Score=67.8, Expect=4e-11]} {Mouse: ENSMUSG00000020564, Atxn7l1, ataxin 7-like 1, [RH, Score=70.5, Expect=3e-12]; ENSMUSG00000021738, Atxn7, ataxin 7, [RH, Score=67.8, Expect=3e-11]} {Smed: dd_Smed_v6_9582_0_1, dd_Smed_v6_9582_0_1, [Score=50.4, Expect=2e-06]} {RNA1509_29095} {RNA1310_17492} {RNA815_28326}
3. MligTC455_50041 333 6.94 Mlig455_025236, Mlig455_025628

Neo: Irradiation

Age: Up-Down-Down

 PAAF1 0.958 - - - - - 0.958

Mlig455_025236 {REF} {Length: 2597} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=64.3]} {Human: ENSG00000175575, PAAF1, proteasomal ATPase associated factor 1, [RH, Score=176, Expect=1e-50]} {Mouse: ENSMUSG00000020745, Pafah1b1, platelet-activating factor acetylhydrolase, isoform 1b, subunit 1, [Score=68.9, Expect=3e-12]; ENSMUSG00000028086, Fbxw7, F-box and WD-40 domain protein 7, [Score=68.2, Expect=8e-12]; ENSMUSG00000038697, Taf5l, TATA-box binding protein associated factor 5 like, [Score=66.2, Expect=3e-11]} {Dmel: FBgn0011569, can, cannonball, [Score=65.5, Expect=5e-11]} {Celegans: WBGene00021467, Y39G10AR.9, [RH, Score=117, Expect=8e-29]} {Smed: dd_Smed_v6_3359_0_1, dd_Smed_v6_3359_0_1, [Score=72.8, Expect=7e-14]} {RNA1509_39072} {RNA1310_14639} {RNA815_33474}

Mlig455_025628 {REF} {Length: 2476} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=68.1]} {Human: ENSG00000175575, PAAF1, proteasomal ATPase associated factor 1, [RH, Score=179, Expect=2e-51]} {Mouse: ENSMUSG00000020745, Pafah1b1, platelet-activating factor acetylhydrolase, isoform 1b, subunit 1, [Score=69.7, Expect=2e-12]; ENSMUSG00000038697, Taf5l, TATA-box binding protein associated factor 5 like, [Score=66.6, Expect=2e-11]} {Dmel: FBgn0015754, Lis-1, Lissencephaly-1, [Score=63.9, Expect=9e-11]} {Celegans: WBGene00021467, Y39G10AR.9, [RH, Score=117, Expect=8e-29]} {Smed: dd_Smed_v6_3359_0_1, dd_Smed_v6_3359_0_1, [Score=73.2, Expect=6e-14]} {RNA1509_39072, RNA1509_41433} {RNA1310_14639, RNA1509_41433} {RNA1509_41433, RNA815_33474}
4. MligTC455_26422 558 11.63 Mlig455_006604

Neo: -

Age: Up-Down-Down

 RAPGEF6 0.955 - - - - 0.955 - Mlig455_006604 {REF} {Length: 5327} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=127.5]; PDZ domain [PF17820.3, score=36.1]; RasGEF N-terminal motif [PF00618.22, score=30.2]; PDZ domain [PF00595.26, score=30.0]; Cyclic nucleotide-binding domain [PF00027.31, score=25.6]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=24.0]; PDZ domain [PF13180.8, score=22.9]} {Human: ENSG00000158987, RAPGEF6, Rap guanine nucleotide exchange factor 6, [RH, Score=477, Expect=3e-145]; ENSG00000273217, AC008695.1, novel protein, [RH, Score=474, Expect=2e-142]; ENSG00000109756, RAPGEF2, Rap guanine nucleotide exchange factor 2, [RH, Score=474, Expect=2e-143]} {Mouse: ENSMUSG00000037533, Rapgef6, Rap guanine nucleotide exchange factor (GEF) 6, [RH, Score=478, Expect=4e-144]; ENSMUSG00000062232, Rapgef2, Rap guanine nucleotide exchange factor (GEF) 2, [RH, Score=474, Expect=9e-144]} {Dmel: FBgn0265778, PDZ-GEF, PDZ domain-containing guanine nucleotide exchange factor, [RH, Score=261, Expect=1e-70]} {Celegans: WBGene00004254, pxf-1, Rap guanine nucleotide exchange factor, [RH, Score=221, Expect=4e-58]} {Smed: dd_Smed_v6_4950_0_3, dd_Smed_v6_4950_0_3, [RH, Score=436, Expect=9e-130]} {RNA1509_33540} {RNA1310_804.1, RNA1509_33540} {RNA1509_33540, RNA815_1044}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA