Data search
Results for MligTC455_40893
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_40893 | 415 | 8.64 | Mlig455_013773 | Neo: - Age: - |
ELAC2 | Mlig455_013773 {REF} {Length: 4282} {TRANSSPLICED} {Pfam: Beta-lactamase superfamily domain [PF12706.9, score=63.8]; tRNase Z endonuclease [PF13691.8, score=38.9]} {Human: ENSG00000006744, ELAC2, elaC ribonuclease Z 2, [RH, Score=250, Expect=1e-70]} {Mouse: ENSMUSG00000020549, Elac2, elaC ribonuclease Z 2, [RH, Score=246, Expect=6e-69]} {Dmel: FBgn0028426, JhI-1, Juvenile hormone-inducible protein 1, [RH, Score=263, Expect=6e-76]} {Celegans: WBGene00001983, hoe-1, Ribonuclease Z, [RH, Score=237, Expect=3e-66]} {Smed: dd_Smed_v6_8992_0_1, dd_Smed_v6_8992_0_1, [RH, Score=180, Expect=3e-47]} {RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1310_6946.1, RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1509_34865, RNA1509_55497, RNA1509_8178, RNA815_2077} |
Cumulative graph for MligTC455_40893
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.979 | 3.602 | 0.16616 | 0.79020 | |
| RegionR2 | 0.354 | 3.602 | 0.54054 | 0.90867 | |
| RegionR3 | 0.786 | 3.602 | 0.05064 | 0.39369 | |
| RegionR4 | -0.001 | 3.602 | 0.99799 | 1.00000 | |
| RegionR5 | 0.601 | 3.602 | 0.10090 | 0.30716 | |
| RegionR6 | 0.767 | 3.602 | 0.07603 | 0.51196 | |
| RegionR7 | -0.261 | 3.602 | 0.66502 | 1.00000 | |
| RegionR8 | -0.265 | 3.602 | 0.71651 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -3.93 | 3.602 | 0.51601 | 1.00000 | |
| RegenerationR2 | 1.149 | 3.602 | 0.00760 | 0.13887 | |
| RegenerationR3 | 0.764 | 3.602 | 0.09515 | 0.49578 | |
| RegenerationR4 | 0.617 | 3.602 | 0.21265 | 0.65997 | |
| RegenerationR5 | 0.5 | 3.602 | 0.21571 | 0.65064 | |
| RegenerationR6 | 0.748 | 3.602 | 0.10775 | 0.40606 | |
| RegenerationBL | -0.699 | 3.602 | 0.41698 | 0.78599 | |
| RegenerationTP | 0.485 | 3.602 | 0.51020 | 0.90719 |
Genes with expression patterns similar to MligTC455_40893
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_40893 | 415 | 8.64 | Mlig455_013773 | Neo: - Age: - |
ELAC2 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_013773 {REF} {Length: 4282} {TRANSSPLICED} {Pfam: Beta-lactamase superfamily domain [PF12706.9, score=63.8]; tRNase Z endonuclease [PF13691.8, score=38.9]} {Human: ENSG00000006744, ELAC2, elaC ribonuclease Z 2, [RH, Score=250, Expect=1e-70]} {Mouse: ENSMUSG00000020549, Elac2, elaC ribonuclease Z 2, [RH, Score=246, Expect=6e-69]} {Dmel: FBgn0028426, JhI-1, Juvenile hormone-inducible protein 1, [RH, Score=263, Expect=6e-76]} {Celegans: WBGene00001983, hoe-1, Ribonuclease Z, [RH, Score=237, Expect=3e-66]} {Smed: dd_Smed_v6_8992_0_1, dd_Smed_v6_8992_0_1, [RH, Score=180, Expect=3e-47]} {RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1310_6946.1, RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1509_34865, RNA1509_55497, RNA1509_8178, RNA815_2077} |
| 2. | MligTC455_19560 | 809 | 16.85 | Mlig455_064210 | Neo: Int S/G2/M Age: - |
LARS | 1.757 | 0.805 | - | - | - | - | 0.952 | Mlig455_064210 {REF} {Length: 4546} {TRANSSPLICED} {Pfam: tRNA synthetases class I (I, L, M and V) [PF00133.24, score=125.1]; tRNA synthetases class I (M) [PF09334.13, score=60.1]; Anticodon-binding domain of tRNA ligase [PF08264.15, score=36.1]; tRNA synthetases class I (C) catalytic domain [PF01406.21, score=30.8]} {Human: ENSG00000133706, LARS, leucyl-tRNA synthetase, [RH, Score=1205, Expect=0.0]} {Mouse: ENSMUSG00000024493, Lars, leucyl-tRNA synthetase, [RH, Score=1222, Expect=0.0]} {Dmel: FBgn0284253, LeuRS, Leucyl-tRNA synthetase, [RH, Score=1149, Expect=0.0]} {Celegans: WBGene00003073, lars-1, Leucine--tRNA ligase, [RH, Score=1089, Expect=0.0]} {Smed: dd_Smed_v6_2849_0_1, dd_Smed_v6_2849_0_1, [RH, Score=1112, Expect=0.0]} {RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1310_108.1, RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1509_13969, RNA1509_22279, RNA1509_2311, RNA815_883} |
| 3. | MligTC455_33021 | 930 | 19.37 | Mlig455_029946 | Neo: - Age: - |
CNOT1 | 1.678 | - | - | - | - | 0.718 | 0.960 | Mlig455_029946 {REF} {Length: 11357} {Pfam: CCR4-Not complex component, Not1 [PF04054.17, score=392.8]; CCR4-NOT transcription complex subunit 1 CAF1-binding domain [PF16415.7, score=260.6]; Domain of unknown function (DUF3819) [PF12842.9, score=127.4]; CCR4-NOT transcription complex subunit 1 HEAT repeat [PF16418.7, score=60.7]; CCR4-NOT transcription complex subunit 1 TTP binding domain [PF16417.7, score=49.5]} {Human: ENSG00000125107, CNOT1, CCR4-NOT transcription complex subunit 1, [Score=788, Expect=0.0]} {Mouse: ENSMUSG00000036550, Cnot1, CCR4-NOT transcription complex, subunit 1, [Score=787, Expect=0.0]} {Dmel: FBgn0085436, Not1, [Score=666, Expect=0.0]} {Celegans: WBGene00002845, let-711, NTL-1a, [Score=553, Expect=2e-162]} {Smed: dd_Smed_v6_2389_0_1, dd_Smed_v6_2389_0_1, [Score=914, Expect=0.0]} {RNA1509_1462} {RNA1310_198.1} {RNA815_2251} |
| 4. | MligTC455_26604 | 556 | 11.59 | Mlig455_011801, Mlig455_013075 | Neo: - Age: Up-Down-Down |
0.959 | - | - | - | - | - | 0.959 | Mlig455_011801 {REF} {Length: 4502} {Pfam: IQ calmodulin-binding motif [PF00612.29, score=18.7]} {RNA1509_37972} {RNA1310_20386} {RNA815_13510} Mlig455_013075 {REF} {Length: 3068} {Pfam: IQ calmodulin-binding motif [PF00612.29, score=40.6]} {RNA1509_38001} {RNA1310_27776.1} {RNA815_13510} |
|
| 5. | MligTC455_25593 | 620 | 12.91 | Mlig455_010640 | Neo: - Age: Up-Down-Up |
0.957 | - | - | - | - | - | 0.957 | Mlig455_010640 {REF} {Length: 6295} {TRANSSPLICED} {RNA1509_21874, RNA1509_21918, RNA1509_4078} {RNA1310_3072, RNA1509_21874, RNA1509_21918} {RNA1509_21874, RNA1509_21918, RNA815_5186} | |
| 6. | MligTC455_48397 | 244 | 5.08 | Mlig455_064477 | Neo: - Age: logFC(26M/2M)=-0.282 |
SCNN1G | 0.953 | - | - | - | - | 0.953 | - | Mlig455_064477 {REF} {Length: 2621} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=238.2]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=81.6, Expect=1e-15]; ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=80.5, Expect=3e-15]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=86.7, Expect=2e-17]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=82.8, Expect=1e-16]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=125, Expect=3e-30]} {RNA1509_22321} {RNA1310_6593, RNA1509_22321} {RNA1509_22321, RNA815_4075} |
| 7. | MligTC455_08201 | 1353 | 28.2 | Mlig455_025321 | Neo: - Age: - |
0.951 | - | - | - | - | 0.951 | - | Mlig455_025321 {REF} {Length: 5147} {TRANSSPLICED} {tRNA: Tyr(GTA), score=73.9} {RNA1509_19353, RNA1509_8053} {RNA1310_5924, RNA1509_19353, RNA1509_8053} {RNA1509_19353, RNA1509_8053, RNA815_2357} | |
| 8. | MligTC455_31801 | 33 | 0.69 | Mlig455_043137 | Neo: - Age: - |
TRIM3 | 0.951 | - | - | - | - | 0.951 | - | Mlig455_043137 {REF} {Length: 3495} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=35.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=57.0, Expect=6e-08]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=56.6, Expect=8e-08]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=57.0, Expect=5e-08]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=56.6, Expect=6e-08]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1} |
Berezikov Lab - 2020-2021 © ERIBA